ID AY744473; SV 1; linear; genomic RNA; STD; VRL; 2920 BP. XX AC AY744473; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-6 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2920 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2920 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; a52d9814430866b61641cc09fe289abe. XX FH Key Location/Qualifiers FH FT source 1..2920 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="chrysanthemum" FT /isolate="CA-6" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP57" FT /protein_id="AAU95394.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCEAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGEITLNYGEDAYKRKYFLSKT FT LDCLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI FT KEAYASGSK" FT gene complement(1993..2769) FT /gene="Nc" FT CDS complement(1993..2769) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP64" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP64" FT /protein_id="AAU95395.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 2920 BP; 926 A; 550 C; 469 G; 975 T; 0 other; agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt caatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga 300 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta atggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagccgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaatccgta aatgtgaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgtccatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct 1200 aactcctaga aagttagatt taggtgaaat aaccttgaat tacggtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga ctgtcttcca tctaacacac aaactatgtc 1320 ttatttagac agcatccaaa tcccctcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgcta 1500 tgtccatcgt tttctaatta tgttatgttt atttctttct ttacttataa ttatttctct 1560 gtttgtcatt tctttcaaat tcctcctgtc tagtagaaac cataaaacaa aaataaaaaa 1620 taaaataaaa tcaaaataaa ataaaaatta aaaaatgaaa taaaaacaac aaaaaaatta 1680 aaaacaaaaa accaaaaaag atcccgaaag ggacaatttt ggccaaattt gggttttgtt 1740 tttgtttttt gttttttgtt ttttgttttt atttttattt atttattttt atttatttta 1800 tttatttttg tttttatttt atgttttttg ttgtttttgt tattttgtta tttattaagc 1860 acaacacaca gaaagcaaac tttaattaaa cacacttatt aaaatttaac acactaagca 1920 agcacaagca ataaagataa agaaagcttt atatatttat aggctttttt ataatttaac 1980 ttacagctgc ttttaagcaa gttctgtgag ttttgcctgt tttttaactc caaacatttc 2040 atagaacttg ttaagagttt cgctgtaatg ttccatagca atacttcctt tagcattagg 2100 attgctggag ctaagtatag cagcatactc tttccccttc ttcacctgat cttcattcat 2160 ttcaaatgct ttgcttttca gcacagtgca aacttttcct aaggcttccc tggtgtcata 2220 cttctttggg tcgatcccga ggtccttgta ttttgcatcc tgatatatag ccaagacaac 2280 actgatcatc tcaaagctat caactgaagc aataagaggt aagctacctc ctagcattat 2340 ggcaagcctc acagactttg catcatcaag aggtaatcca taggcttgaa tcaaagggtg 2400 ggaagcaatc ttagatttga tagtattgag attctcagaa ttcccagttt cctcaacaag 2460 cctgaccctg atcaagctat caagccttct gaaggtcatg tcagtggctc caatcctgtc 2520 tgaagttttc tttatggtaa ttctaccaaa agtaaaatca ctttgcttaa taaccttcat 2580 tatgctctga cgattcttca ggaatgtcag acatgaaata atgctcatct ttttgatctg 2640 gtcaaggttt tccagacaaa aagtcttgaa gttgaatgct accagattct gatcttcctc 2700 aaactcaagg tctttgcctt gtgtcaacaa agcaacaatg ctttccttag tgagcttaac 2760 cttagacatg atgatcgtag aagttgttat atgctttgac cgtatgcaac tcaaggtgca 2820 aaagtgcaac tctgtatccc gcagtcgttt cttagggttt taatgtgatg atttgtaaga 2880 ctgagtgtta aggtttgaat aaaattgaca caattgctct 2920 //