ID AY744471; SV 1; linear; genomic RNA; STD; VRL; 2921 BP. XX AC AY744471; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-4 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2921 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2921 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 068af6c95c054b8fe7dd6a7325cc5923. XX FH Key Location/Qualifiers FH FT source 1..2921 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="chrysanthemum" FT /isolate="CA-4" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP61" FT /protein_id="AAU95390.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCEAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGEITLNYGEDAYKRKYFLSKT FT LDCLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLQLDLSGIKKKESKI FT KEAYASGSK" FT gene complement(1994..2770) FT /gene="Nc" FT CDS complement(1994..2770) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP64" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP64" FT /protein_id="AAU95391.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 2921 BP; 926 A; 552 C; 468 G; 975 T; 0 other; agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt caatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga 300 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta atggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagccgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaatccgta aatgtgaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcaaagga ttgtccatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct 1200 aactcctaga aagttagatt taggtgaaat aaccttgaat tacggtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga ctgtcttcca tctaacacac aaactatgtc 1320 ttatttagac agcatccaaa tcccctcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattt cagttgcaaa atctttgtta cagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tgtccatcat tttctaatta tgttatgttt atttctttct ctacttataa ttatttctct 1560 gtttgtcatt tctttcaaat tcctcctgtc tagtagaaac cataaaacaa aaataaaaaa 1620 taaaataaaa tcaaaataaa ataaaaatca aaaaatgaaa taaaaacaac aaaaaaatta 1680 aaaacaaaaa accaaaaaag atcccgaaag ggacaatttt ggccaaattt gggttttgtt 1740 tttgtttttt gttttttgtt ttttgttttt atttttattt tatttatttt tatttatttt 1800 atttattttt gtttttattt tatgtttttt gttgtttttg ttattttgtt atttattaag 1860 cacaacacac aaaaagcaaa ctttaattaa acacacttat taaaatttaa cacactaagc 1920 aagcacaagc aataaagata aagaaagctt tatatattta taggcttttt tataatttaa 1980 cttacagctg cttttaagca agttctgtga gttttgcctg ttttttaacc ccaaacattt 2040 catagaactt gttaagagtt tcgctgtaat gttccatagc aatacttcct ttagcattag 2100 gattgctgga gctaagtata gcagcatact cttttccctt cttcacctga tcttcattca 2160 tttcaaatgc tttgcttttc agcacagtgc aaacttttcc taaggcttcc ctggtgtcat 2220 acttctttgg gtcgatcccg aggtccttgt attttgcatc ctgatatata gccaagacaa 2280 cactgatcat ctcaaagcta tcaactgaag caataagagg taagctacct cctagcatta 2340 tggcaagcct cacagacttt gcatcatcaa gaggtaatcc ataggcttga atcaaagggt 2400 gggaagcaat cttagatttg atagtattga gattctcaga attcccagtt tcctcaacaa 2460 gcctgaccct gatcaagcta tcaagccttc tgaaggtcat gtcagtggct ccaatcctgt 2520 ctgaagtttt ctttatggta attctaccaa aagtaaaatc actttgctta ataaccttca 2580 ttatgctctg acgattcttc aggaatgtca gacatgaaat aatgctcatc tttttgatct 2640 ggtcaaggtt ttccagacaa aaagtcttga agttgaatgc taccagattc tgatcttcct 2700 caaactcaag gtctttgcct tgtgtcaaca aagcaacaat gctttcctta gtgagcttaa 2760 ccttagacat gatgatcgta gaagttgtta tatgctttga ccgtatgcaa ctcaaggtgc 2820 aaaagtgcaa ctctgtatcc cgcagtcgtt tcttagggtt ttaatgtgat gatttgtaag 2880 actgagtgtt aaggtttgaa taaaattgac acaattgctc t 2921 //