ID AY744469; SV 1; linear; genomic RNA; STD; VRL; 2926 BP. XX AC AY744469; XX DT 11-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-2 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2926 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-2926 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; e8067c4b8ce2b9aff7ca1cce1ffcfa25. XX FH Key Location/Qualifiers FH FT source 1..2926 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="buttercup" FT /isolate="CA-2" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q5XP65" FT /protein_id="AAU95386.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFSYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNITVICKHQLPIRKCEAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPRKLDLGETTLNYGEDAYKRKYFLSKT FT LECLPSNTQTISYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI FT KEAYASGSK" FT gene complement(1999..2775) FT /gene="Nc" FT CDS complement(1999..2775) FT /codon_start=1 FT /gene="Nc" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q5XP64" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q5XP64" FT /protein_id="AAU95387.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGRITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA" XX SQ Sequence 2926 BP; 932 A; 552 C; 468 G; 974 T; 0 other; agagcaattg tgtcataatt ttattcataa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt caatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttagct atactgcaaa agtaggagat cttccttgtg aagaagaaga 300 gattctctct cagcatgtgt atatccccat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta atggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct actcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaagctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaaccata acagtgttga 960 gacagcttta aacattactg ttatttgcaa gcatcagctc ccaattcgta aatgtgaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgtccatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatttac actttgaaca accatgagct 1200 aactcctaga aagttagatt taggtgaaac aaccttgaat tacggtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatttc 1320 ttatttagac agcatccaaa tcccctcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctccg caatctattt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga ttaaggaagc atatgcttca ggatcaaaat gatcttgctg 1500 tgtccatcgt tttctaatta tgtcatgttt atttctttct ttacttacaa ttatttctct 1560 gtttgtcatt tctttcaaat tcctcctgtc tagtagaaac cataaaacaa aaataaaaaa 1620 taaaaaataa ataaaatcaa aataaaataa aaatcaaaaa atgaaataaa aacaacaaaa 1680 aaattaaaaa caaaaaacca aaaaagatcc cgaaagggac aattttggcc aaatttgggt 1740 tttgtttttg ttttttgttt tttgtttttt gttttatttt tattttattt atttttattt 1800 attttatttt atttttgttt ttattttatg tttttgttgt ttttgttatt ttgttattta 1860 ttaagcacaa cacacagaaa gcaaacttta attaaacaca cttattaaaa tttaacacac 1920 taagcaagca caagcaataa agataaagaa agctttatat atttataggc ttttttataa 1980 tttaacttac agctgctttt aagcaagttc tgtgagtttt gcctgttttt taaccccaaa 2040 catttcatag aacttgttaa gagtttcgct gtaatgttcc atagcaatac ttcctttagc 2100 attaggattg ctggagctaa gtatagcagc atactctttc cccttcttca cctgatcttc 2160 attcatttca aatgctttgc ttttcagcac agtgcaaact tttcctaagg cttccctggt 2220 gtcatacttc tttgggtcga tcccgaggtc cttgtatttt gcatcctgat atatagccaa 2280 gacaacactg atcatctcaa agctatcaac tgaagcaata agaggtaagc tacctcctag 2340 cattatggca agcctcacag actttgcatc atcaagaggt aatccatagg cttgaatcaa 2400 agggtgggaa gcaatcttag atttgatagt attgagattc tcagaattcc cagtttcctc 2460 aacaagcctg accctgatca agctatcaag ccttctgaag gtcatgtcag tggctccaat 2520 cctgtctgaa gttttcttta tggtaattct accaaaagta aaatcacttt gcttaataac 2580 cttcattatg ctctgacgat tcttcaggaa tgtcagacat gaaataatgc tcatcttttt 2640 gatctggtca aggttttcca gacaaaaagt cttgaagttg aatgctacca gattctgatc 2700 ttcctcaaac tcaaggtctt tgccttgtgt caacaaagca acaatgcttt ccttagtgag 2760 cttaacctta gacatgatga tcgtagaagt tgttatatgc tttgaccgta tgcaactcaa 2820 ggtgcaaaag tgcaactctg tatcccgcag tcgtttctta gggttttaat gtgatgattt 2880 gtaagactga gtgttaaggt ttgaataaaa ttgacacaat tgctct 2926 //