ID AY743591; SV 2; linear; genomic RNA; STD; VRL; 2876 BP. XX AC AY743591; XX DT 12-OCT-2004 (Rel. 81, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 3) XX DE Strawberry necrotic shock virus segment RNA 2, complete sequence. XX KW . XX OS Strawberry necrotic shock virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2876 RX DOI; 10.1007/s00705-010-0601-8. RX PUBMED; 20195656. RA Tzanetakis I.E., Martin R.R., Scott S.W.; RT "Genomic sequences of blackberry chlorotic ringspot virus and strawberry RT necrotic shock virus and the phylogeny of viruses in subgroup 1 of the RT genus Ilarvirus"; RL Arch. Virol. 155(4):557-561(2010). XX RN [2] RP 1-2876 RA Tzanetakis I.E.; RT ; RL Submitted (07-SEP-2004) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX RN [3] RC Sequence update by submitter RP 1-2876 RA Tzanetakis I.E.; RT ; RL Submitted (05-DEC-2006) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 6b85800614eb042053fac5edf5b032db. DR EuropePMC; PMC5491605; 28713347. XX CC On Dec 5, 2006 this sequence version replaced gi:53854586. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Strawberry necrotic shock virus" FT /segment="RNA 2" FT /host="Fragaria vesca" FT /mol_type="genomic RNA" FT /country="USA:Maryland" FT /note="same source material as AY363228" FT /db_xref="taxon:243563" FT CDS 36..2447 FT /codon_start=1 FT /product="RdRp" FT /note="polymerase" FT /db_xref="GOA:Q5XPM6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5XPM6" FT /protein_id="AAU95676.2" FT /translation="MDYVKENLIVYSLRSRLEFIQSFGVEPDMFKEWVSMFLFKFVVEH FT TAKFDFATIDCTFGMVVARLIPGYSDLDDEDEELSRHEIDPFYLPYDDLDVDYTSNTVD FT CNDVTIPTDEVYNLVSNASYIPEGVSWGDVTDTSFEDHMETIQDIPTLNVESPSVSHVE FT FMTDDDGLIQDHRWIDANESIAPDITADADLRLCGHVEYCSGSIGVSKWKPKVTQVRPD FT PSVIQNAVDELFPNHHSVDDKFFQEWVETHDIDLEVTNCDLDLSVFNDWTKGSDTRLMP FT TLSVGGLSHRVPTQRETLLAVKKRNMNVPELQSQFDHNDVLNRCVNRFMTHVIDKTRLS FT KLLPISGEEVHYFNQYIENKNPPLSEYKGPIPLIALDKYMHMIKTTLKPVEDDSLHIER FT LIPATITYHKKGVVMMTSPYFLCAMVRLLHVLKSKFTVPTGKYHQIFQMDPTKLEVSNF FT FKEIDFSKFDKSQGRLHHDVQFKLFLMLGIPEHFVTTWFNAHEVSHIRDRDCGVGFSVD FT YQRRTGDACTYLGNTLVTLSVLSYVYDLSSPNILFVAASGDDSLIGSTQPLPRDKEDLC FT VSLFNFETKFPHNQPFICSKFLLVVECDDGSKEVLAVPNPLKLLQKLGPKTLQVTMIDD FT YYQSLCDILWVFEDADICRRVAELAEFRCFKGRRHCLFLESALLSLPSLVANRLKFLRR FT TINLESSKACIRNDVHSNLVAALEPMCARGLDTPPRDSGKFARRKDFQVDKGNSRDYSW FT REEPSTGDKVKTPRIGEGIHRRGRRGSNAISQRNQVGRKESTWKGGNKLH" FT CDS 2155..2790 FT /codon_start=1 FT /product="2b protein" FT /db_xref="UniProtKB/TrEMBL:A1A439" FT /protein_id="ABL11235.1" FT /translation="MMFIPILLLLLSPCVLADLIPHPEIPGNLPEEKISKSIRETPETI FT PGERNPRPEIKLKPQESVKVSTDVGGEAPMQFPSEIKLEEKSPPGKVVTNCIDCAIQHL FT PEVAFSVKVPKLNIDFEVTDFPSSRLIFAKLASRIRDLPFVRSLRIPSDHQRLQLRSIG FT DVEVHIHIPKFGWKQVLKMSDVISGFELPKIPTIAPNVESCVGECLTH" XX SQ Sequence 2876 BP; 814 A; 517 C; 641 G; 904 T; 0 other; gtattttgct gaatatctta ggcaaaacct ccgtaatgga ttatgttaaa gaaaacctca 60 ttgtttattc attgagaagc cgattggaat ttatccaatc gtttggagtt gaacctgaca 120 tgtttaaaga atgggttagc atgtttttgt tcaagtttgt agtcgaacac acggcgaaat 180 ttgatttcgc cacaatcgat tgtacgtttg gtatggtcgt agctaggtta atacctggtt 240 attccgatct tgatgatgaa gatgaagagc tttctcgaca tgagattgat cccttttatc 300 ttccttatga tgatctcgat gtggactata ccagcaatac tgtcgattgc aatgatgtta 360 cgataccgac tgacgaggtt tataatctcg tgtcgaatgc cagttatatt cccgagggtg 420 tgtcgtgggg tgatgtcacc gacacctcat tcgaagatca catggaaact attcaggata 480 taccaacatt gaatgttgag agtcctagtg tttcacatgt tgaatttatg actgatgacg 540 atggtcttat tcaagatcat cgttggattg atgccaacga gtcgattgcg ccagatataa 600 ctgctgatgc tgacttgaga ttgtgtggtc atgttgagta ttgttccggg tccattggtg 660 tttcaaaatg gaaacccaag gttactcaag tccgacccga tccgtcagtt attcagaatg 720 ccgttgatga attgttccca aaccatcaca gtgtcgatga taaattcttc caagagtggg 780 tggaaaccca cgatatagat cttgaggtta ccaattgtga tcttgattta tccgtcttta 840 atgactggac taagggatct gatactcgat tgatgccgac actgtcagtg ggtggtttgt 900 ctcatagagt tccaactcag cgtgaaacgt tgttagcggt gaagaaacgc aacatgaacg 960 tgcctgagtt gcagagtcag tttgatcata acgatgtctt aaaccgatgt gttaatcggt 1020 tcatgacaca tgtcattgat aagactaggt tgtctaaact gttaccgata tctggggagg 1080 aagtgcatta ctttaaccag tatatcgaga ataagaatcc ccctttgtct gaatataagg 1140 gtccaattcc attgattgct cttgataagt atatgcatat gatcaagacg acattgaagc 1200 ctgtggaaga tgattcatta cacatagaaa gactcattcc tgctaccata acttatcata 1260 agaagggagt tgttatgatg acttcacctt atttcttatg tgctatggtt agattactcc 1320 atgtgttgaa gtcaaagttt actgtgccca caggaaaata ccaccagata tttcaaatgg 1380 atcccaccaa actcgaagtg tctaatttct ttaaagaaat tgatttctca aagtttgaca 1440 agtctcaagg aaggttgcac cacgacgttc agtttaagtt attcctaatg ttaggaatac 1500 ctgaacattt tgtgacgacg tggtttaatg cccatgaggt gagtcacata agagatcgag 1560 attgtggggt ggggttttcc gttgattatc aacgaagaac tggtgatgca tgcacatact 1620 taggtaacac tttggttact ctaagtgtct taagttatgt gtatgatttg tcatccccga 1680 acattttgtt cgtagcagct agtggcgacg atagcttgat tggatcgacg caaccattac 1740 ctcgagataa agaggacttg tgtgtgtcct tgtttaattt cgagacgaaa tttccacata 1800 atcaaccatt tatatgttca aaatttttat tagtggttga atgtgatgac gggtctaaag 1860 aagttttggc ggttcccaac ccgttaaaat tattgcagaa acttggacct aagactctac 1920 aagtcacaat gattgatgat tattatcaaa gtctttgtga tattttatgg gtgtttgagg 1980 atgccgacat atgtcgaagg gttgctgaat tggctgagtt caggtgtttt aaaggtagac 2040 gtcattgtct atttcttgag tcagccttat tgagtttacc aagtttagtg gcaaacagat 2100 tgaaatttct tagaagaact atcaatttag agagttctaa agcttgtata agaaatgatg 2160 ttcattccaa tcttgttgct gctcttgagc ccatgtgtgc tcgcggactt gataccccac 2220 ccagagattc cgggaaattt gcccgaagaa aagatttcca agtcgataag ggaaactcca 2280 gagactattc ctggagagag gaaccctcga ccggagataa agttaaaacc ccaagaatcg 2340 gtgaaggtat ccaccgacgt gggaggagag gctccaatgc aatttcccag cgaaatcaag 2400 ttggaagaaa agagtccacc tggaaaggtg gtaacaaatt gcattgattg tgccatacaa 2460 catcttccgg aggttgcttt ctccgtgaag gtaccgaagt taaatattga cttcgaagtg 2520 acagattttc cttcttcaag gttaatcttt gccaaactag ctagtaggat tcgtgatttg 2580 ccctttgtaa gatcattgag gattccctca gatcatcaaa gattgcaatt acgatctatc 2640 ggtgatgttg aagtacacat ccatattcca aaatttggtt ggaaacaagt tttgaagatg 2700 tctgatgtga tttccggttt tgaattaccg aagattccca ccatcgctcc taatgtggag 2760 tcttgtgttg gagaatgttt aactcattaa catggcagct gagcgcatct atctcagtgg 2820 ttaatgattg ctattaatat ctaatgatat taataatgcc tccaatttgg agatgc 2876 //