ID AY742220; SV 1; circular; genomic DNA; STD; VRL; 2630 BP. XX AC AY742220; AF335426; XX DT 13-OCT-2004 (Rel. 81, Created) DT 08-JUL-2005 (Rel. 84, Last updated, Version 3) XX DE Cotton leaf crumple virus - [California] segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf crumple virus - [California] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2630 RA Seo Y.-S., Zhou Y.C., Turini T.A., Cook C.G., Gilbertson R.L., RA Natwick E.T.; RT "Host Plant Resistance and Etiology of the Whitefly-Transmitted Cotton Leaf RT Crumple Disease in the Imperial Valley of California"; RL Unpublished. XX RN [2] RP 1-2630 RA Henry D.M., Seo Y.-S., Gilbertson R.L., Guzman P.; RT ; RL Submitted (10-JAN-2001) to the INSDC. RL Plant Pathology, University of California Davis, One Shields Avenue, Davis, RL CA 95616, USA XX RN [3] RC Sequence update by submitter RP 1-2630 RA Zhou Y.C., Seo Y.-S., Gilbertson R.L.; RT ; RL Submitted (03-SEP-2004) to the INSDC. RL Plant Pathology, University of California Davis, One Shields Avenue, Davis, RL CA 95616, USA XX DR MD5; b631fc8517bf035e52b94a74ca7a965f. XX CC On Oct 13, 2004 this sequence version replaced gi:12744926. XX FH Key Location/Qualifiers FH FT source 1..2630 FT /organism="Cotton leaf crumple virus - [California]" FT /segment="DNA-A" FT /mol_type="genomic DNA" FT /country="USA:California" FT /db_xref="taxon:335399" FT gene 194..949 FT /gene="AV1" FT CDS 194..949 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:Q99AT7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q99AT7" FT /protein_id="AAK06851.2" FT /translation="MPKRDAPWRLLAGTSKVSRNANYSPLRVLGPKVNKASEWVNRPMY FT RKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDVSHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRLQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(946..1344) FT /gene="AC3" FT CDS complement(946..1344) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:Q5XPX4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q5XPX4" FT /protein_id="AAV28210.1" FT /translation="MDSRTGELITARQAENGVYIWEIINPLYFKIYGVEDLLYTRTRIY FT HVQIRFNHNLRKALHLHKAYLNFQVWTTSLTASGSTYLIRFRQLVMLYLDELGVISLNN FT VIRAVRFATDKSYVSYVLEYHAIKFKFY" FT gene complement(1091..1480) FT /gene="AC2" FT CDS complement(1091..1480) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /db_xref="GOA:Q5XPX3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5XPX3" FT /protein_id="AAV28211.1" FT /translation="MLSSSLSTPPSIKKAHRQAKRRAIRRRRIDLNCGCTIYFHIGCTG FT HGFTHRGTHHCTSGREWRVYLGDNKSPLFQDIRSRGSAIHQDAYIPRPDPIQPQLTESV FT ASPQSLPELPSLDDISDSFWVDLFN" FT gene complement(1407..2471) FT /gene="AC1" FT CDS complement(1407..2471) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /db_xref="GOA:Q99AT8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q99AT8" FT /protein_id="AAK06852.2" FT /translation="MPRKPDSFRLQARHIFLTYPKCDIPKNEALQMLQTLSWSVVKPTY FT IRVAREEHSDGFPHLHCLIQLSGKSNIKNERFFDLTHPRRSTNFHPNIQAAKDANAVKN FT YITKDGDCCESGQFTVPGGTKKNKDDVFYNAINAPSLAEALAIIRAGDPRAFIVSYHNI FT KANLERLFKKAPEQWVPPFPLSSFTNVPEQMQEWADDYFGMGPAARPVRPVSLIVEGDS FT RTGKTMWARALGPHNYLSGHLDFNNRVYSNNVAYNVIDDVSPQYLKLKHWKELLGAQKD FT WQSNCKYGKPVQIKGXIXSIVLCNPGEGSSYKDFLDKAENASLKHWTLKNVIFITLDAP FT LYQEGTQASQEEGD" FT misc_feature 2485..2610 FT /note="common region" XX SQ Sequence 2630 BP; 684 A; 547 C; 628 G; 767 T; 4 other; ctgatggccg cgcggatttt ggagccccct tttgtcgtta gcgcgacctt taatttgaat 60 taaaggttgc ttttttctgt tgtccaatca ttttgcgcct gactagccta gatattagca 120 acaacttcgc gactaagttg ttgaccggca agtataaatt aatgggctta tggcccaatg 180 ggtatagagc aaaatgccca agcgtgatgc cccgtggcgc ttattagcgg gtacgtctaa 240 ggtaagtcga aatgccaact actctcccct gagagtattg ggccctaagg ttaataaggc 300 ctctgaatgg gttaacaggc ctatgtatag gaagcccaga atctaccgca cgttaaggac 360 gcctgacatt ccgagaggct gtgaagggcc atgtaaagtc cagtcgtatg aacagcgcca 420 cgatgtctca cacgtgggta aggtaatgtg tatatctgat gtcacacgtg gtaatggtat 480 cacccaccgt gttggtaagc gtttctgtgt taagtctgta tatattttag ggaaaatatg 540 gatggatgag aatattaagc tgaagaacca cacgaacagt gtcatttttt ggctggttag 600 agatcgtaga ccatatggca cgcctatgga ctttggtcaa gtgtttaata tgtttgacaa 660 cgagcccagt actgccactg tcaagaacga tctcagagat aggttgcagg tcatgcacaa 720 gttttatgct aaggtaactg gtggacaata cgcgagcaac gagcaagcct tggtcaagag 780 attctggaag gtcaacaatc atgtggtgta caaccaccag gaagcaggga aatatgagaa 840 tcacactgag aatgcgctat tattgtacat ggcatgtact catgcctcta atcctgtgta 900 tgcaacattg aaaattcgga tctattttta cgattcgatc atgaattaat aaaatttaaa 960 ttttattgca tgatattcta gtacataact gacatacgac ttatcagttg cgaaacgaac 1020 agctctaatt acattgttaa gtgaaattac gcctaattcg tctaagtaca acataaccaa 1080 ctgtctaaac ctaattaaat aagtcgaccc agaagctgtc agagatgtcg tccagacttg 1140 gaagttcagg taagctttgt ggagatgcaa cgctttccgt aagttgtggt tgaatcggat 1200 ctggacgtgg tatatacgcg tcctggtgta tagcagatcc tctactccgt atatcttgaa 1260 atagagggga tttattatct cccagatata cacgccattc tctgcctgac gtgcagtgat 1320 gagttcccct gtgcgtgaat ccatgaccgg tgcagcctat gtggaagtat atggtgcacc 1380 cacagtttag atcaatgcgt cgtcgtctaa tcgccctcct cttggcttgc ctgtgtgcct 1440 tcttgataga ggggggcgtc gagagtgatg aagataacat tcttgagtgt ccaatgtttg 1500 agcgacgcat tttccgcctt atccaggaaa tctttatagc tggatccctc gcctggattg 1560 caaagcacga ttgaakgkat yyctccttta atttgaactg gtttcccgta tttgcaattt 1620 gactgccagt ctttttgggc cccaagaagc tctttccaat gctttagctt taggtattgc 1680 ggtgatacgt catcaatgac gttataggca acattattcg agtacactcg attattgaag 1740 tccaggtgtc cactgaggta attatgtggg cctaaagcac gagcccacat cgtcttgccc 1800 gttctagaat caccttccac tatgagacta actggtctca caggccgcgc agcgggaccc 1860 attccaaaat aatcatccgc ccattcttgc atctgttcag gaacgttagt gaaagaggaa 1920 agtggaaatg gagggaccca ttgttcaggc gcctttttga aaaggcgttc caagtttgct 1980 ttgatgttat ggtagctcac gatgaacgct cttggatctc cggcccggat aattgcaaga 2040 gcttccgcca gactaggtgc attgatggcg ttataaaaga cgtcgtcttt attctttttt 2100 gtacccccag gcactgtgaa ctgtccggat tcacaacaat cgccgtcttt ggtgatgtaa 2160 ttcttgacgg cgttggcgtc tttggctgct tgtatgtttg ggtgaaaatt ggtcgacctt 2220 ctggggtgag taaggtcgaa aaatctctca ttcttgatgt tggactttcc ggagagttgg 2280 atgagacagt gaagatgtgg gaatccgtcc gagtgctcct ctctggcaac tcgaatatat 2340 gttggtttga cgactgacca tgataaggtt tgaagcattt gaagagcttc atttttaggg 2400 atatcgcact tgggataggt taagaaaata tgtctggctt gtaaacgaaa agaatcgggt 2460 tttctaggca tattttaaat agtgacccag gactcaaaaa ctagctctca acttctctca 2520 tatgttgtgg agtctggagt cctttatata tgtttacgct atagaaggca tttggggact 2580 ctcccgggcc caccatagga ctccataccg cggccatcta tataatatta 2630 //