ID AY736854; SV 1; circular; genomic DNA; STD; VRL; 2772 BP. XX AC AY736854; XX DT 30-SEP-2004 (Rel. 81, Created) DT 19-SEP-2006 (Rel. 89, Last updated, Version 2) XX DE Tomato yellow leaf curl Sardinia virus-[Sicily] clone pTnTY1, complete DE genome. XX KW . XX OS Tomato yellow leaf curl Sardinia virus-[Sicily] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2772 RA Gharsallah Chouchane S., Gorsane F., Nakhla M.K., Maxwell D.P., RA Marrakchi M., Fakhfakh H.; RT "Complete Nucleotide Sequence and Construction of an Infectious Clone of a RT Tunisian Isolate of Tomato yellow leaf curl Sardinia virus"; RL J. Phytopathol. 154(10):626-631(2006). XX RN [2] RP 1-2772 RA Gharsallah Chouchane S., Gorsane F., Fakhfakh H., Nakhla M.K., RA Marrakchi M., Maxwell D.P.; RT "Improved detection and quantification of Tomato yellow leaf curl Sardinia RT virus using TaqMan real-time PCR"; RL Unpublished. XX RN [3] RP 1-2772 RA Gharsallah Chouchane S., Nakhla M.K., Maxwell D.P.; RT ; RL Submitted (27-AUG-2004) to the INSDC. RL Plant Pathology, University of Wisconsin, 1630 Linden Drive, Madison, WI RL 53706, USA XX DR MD5; e0ce93e007932b5c6a4d26175856110f. DR EuropePMC; PMC2224568; 17977971. XX FH Key Location/Qualifiers FH FT source 1..2772 FT /organism="Tomato yellow leaf curl Sardinia virus-[Sicily]" FT /strain="Sicily" FT /mol_type="genomic DNA" FT /country="Tunisia:near Bkalta, Sahel region" FT /isolation_source="tomato sample Bk3 collected from a FT greenhouse in December 2002" FT /clone="pTnTY1" FT /db_xref="taxon:221539" FT gene 140..487 FT /gene="V2" FT CDS 140..487 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q5XUM5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q5XUM5" FT /protein_id="AAU84909.1" FT /translation="MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDL FT ISVIRARDYAEANRRYTNFNSRLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVS FT KAADVQNVQKP" FT gene 300..1076 FT /gene="V1" FT CDS 300..1073 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q5XUM4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5XUM4" FT /protein_id="AAU84910.1" FT /translation="MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAVPTVQGIKRRSWT FT YRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT gene complement(1070..1474) FT /gene="C3" FT CDS complement(1070..1474) FT /codon_start=1 FT /gene="C3" FT /product="ren protein" FT /note="replication enhancement protein" FT /db_xref="GOA:Q5XUM3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q5XUM3" FT /protein_id="AAU84913.1" FT /translation="MDLRTGEYITAHQATSGVYTFGITNPLYFKITRHNQNPFNNIYNT FT LTFQIRFNHNLRKELGIHKCFLNFSIWTTLQSQTGHFLRVFKYQVCKYLNNLGVISLNN FT VVRAVDYVLYDVLEGTIDVTENHVIKFNIY" FT gene complement(1215..1622) FT /gene="C2" FT CDS complement(1215..1622) FT /codon_start=1 FT /gene="C2" FT /product="trap protein" FT /note="transcriptional activation protein" FT /db_xref="GOA:Q88950" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q88950" FT /protein_id="AAU84912.1" FT /translation="MRSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHL FT DCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFQDNQTQSEPIQQHIQHTNIPNQIQPQ FT LEEGTGDSQMFSQLQHLDDLTVSDWSFFKSL" FT gene complement(1531..2610) FT /gene="C1" FT CDS complement(1531..2610) FT /codon_start=1 FT /gene="C1" FT /product="rep protein" FT /note="replication-associated protein" FT /db_xref="GOA:Q5XUM1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5XUM1" FT /protein_id="AAU84911.1" FT /translation="MAQPKRFQINAEHYFLTFPKCCLTKEEALEQLLKLQTPTNKKYIK FT ICRELHEDGQPHLHILMQFEGKFNCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDVLEWGNFQIDGRSARGGQQTANDAYAKAINARSKSEALDVIKELAPRDYVLHFH FT NISSNLDKVFQVPPAPYVSPFLSSSFDQVPEELEHWVSENVMDTAARPWRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQALKNWAVKNAIFVTIDQPL FT FTDTHQNTTPHRQEEAGEA" FT gene complement(2163..2453) FT /gene="C4" FT CDS complement(2163..2453) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5XUM0" FT /protein_id="AAU84914.1" FT /translation="MGNRISIFSCSSRGNSTAKITDSSIWYPQQGQHISIRTFRELNRA FT PTSSPISTRTEMFLNGEISRSTDDLQGEDNRQPTTLTQRQLTQEVSRRLLM" XX SQ Sequence 2772 BP; 751 A; 533 C; 592 G; 896 T; 0 other; accggatggc cgcgctaccc gataaagaag tgggccctac gcagtaattt atgtcgacca 60 atgaaattgc agcctcagag cttatataac tgcttagctt tgttataaac ttgctcccta 120 agttttaaaa atacacaaaa tgtgggatcc attattaaat gaatttcctg attcagtaca 180 tggtctccga tgcatgctcg caattaaata tttgcagcta gttgaagaaa cctacgaacc 240 taataccctt ggtcacgacc taatcaggga tctcatctcc gtcattcgtg ctcgtgacta 300 tgccgaagcg aaccggcgat atactaattt caactcccgt ctcgaaggtt cgtcgaagac 360 tgaacttcga cagcccgtat accagccgtg ctgctgtccc cactgtccaa ggcatcaagc 420 gtcgatcatg gacttacagg cccatgtatc gaaagccgcg gatgtacaga atgtacagaa 480 gccctgatgt acctccgggt tgtgaaggtc cctgtaaagt tcagtcgtat gagcagcgtg 540 atgacgtgaa gcatactggt gttgtgcgtt gtgttagtga tgtaactagg ggttctggta 600 ttactcatag agttggtaaa cgtttttgta tcaagtcaat ttatatatta ggaaagattt 660 ggatggatga aaatataaaa aaacaaaatc atactaatca ggttatgttt ttccttgttc 720 gagaccgaag gccttatgga actagtccta tggattttgg tcaagttttt aacatgtttg 780 ataatgaacc cagtactgct acggtgaaga acgacttaag ggataggtat caagtaatga 840 ggaagttcca tgctacggtt gttggaggtc cgtcagggat gaaggagcag tgtctgctga 900 agagattttt taaaattaat acccatgtag tttataatca tcaagagcag gcgaagtatg 960 aaaatcatac tgagaatgcc ttgttattgt atatggcttg tactcatgct tctaacccag 1020 tgtacgctac gttgaaaata cgtatttatt tttatgatgc tgtaacaaat taataaatat 1080 taaattttat tacatgattt tcagttacat caattgttcc ttcgagtaca tcatacaata 1140 cataatcaac tgctctgaca acattattta aagaaattac acccaaatta ttcaaatatt 1200 tacaaacttg atatttaaag actcttaaaa aatgaccagt ctgagactgt aaggtcgtcc 1260 agatgctgaa gttgagaaaa catttgtgaa tccccagttc cttcctcaag ttgtggttga 1320 atctgatttg gaatgttagt gtgttgtata tgttgttgaa tgggttctga ttgtgtctgg 1380 ttatcttgaa atatagggga tttgttatcc cgaaggtata aacgccactc gttgcttgat 1440 gcgcagtgat gtactcccct gtgcgtaaat ccatgattta tgcagtctaa gtgaatgtaa 1500 taagagcagc cacagtctag atctaccctt ctacgcctca cctgcctctt cttggcgatg 1560 tggtgttgta ttttgatggg tatctgtgaa caatggctgg tcgatggtga cgaagatcgc 1620 attcttaacc gcccaatttt ttaatgcttg atttttttct tcgtcgagat attctttaaa 1680 cgatgattgt gggcctggat tgcagaggaa gatagtggga atgcctcctt taatttgaat 1740 gggcttccca tactttgtgt tgctctgcca gtctctttgg gcccccataa attctttaaa 1800 gtgcttcaaa taatgcgggt cgacgtcatc aatgacgtta taccaggcat tattgctata 1860 tactttttga ctgaggtcaa gatgaccgca caaataatta tgtgggccta aggaacgggc 1920 ccacattgtc tttcctgtcc gactgtcacc ctcaatcact atactcaccg gtctccaagg 1980 ccgcgcagcg gtatccatga cgttctcgga aacccagtgt tcaagttctt caggaacttg 2040 atcgaaagaa gaagataaaa aaggagaaac atacggtgcc ggaggcacct ggaagacctt 2100 atctaaatta ctacttatat tatgaaaatg taaaacataa tccctaggcg ctaattcttt 2160 aattacatca agagcctccg acttacttct tgcgttaatt gcctttgcgt aagcgtcgtt 2220 ggctgtctgt tgtcctcccc ttgcagatcg tccgtcgatc tggaaatttc cccattcaag 2280 aacatctccg tccttgtcga tataggactt gacgtcggag ctcgatttag ctccctgaat 2340 gttcggatgg aaatgtgctg accttgttgg ggataccaga tcgaagaatc tgttattttt 2400 gcagttgaat ttcccctcga actgcatgag aatatggaga tgcggttgcc catcttcgtg 2460 taattctctg cagatcttga tgtatttttt atttgttggt gtttgcagtt tgagtagttg 2520 ttctagggct tcttcttttg tgagacaaca ttttgggaaa gttagaaaat agtgttctgc 2580 atttatttga aaacgtttag gttgagccat ttggtcaatg gctaccaatt gacctcagtt 2640 tcattttact ccatgtattg gtagattggt agcttattta tatgttgggt actaaatggc 2700 atagatgtaa tttttcaaag taattacttt aatttttatt ttttttggta aagcggccat 2760 ccgtctaata tt 2772 //