ID AY730035; SV 2; circular; genomic DNA; STD; VRL; 2733 BP. XX AC AY730035; XX DT 22-SEP-2004 (Rel. 81, Created) DT 26-JUL-2005 (Rel. 84, Last updated, Version 4) XX DE Indian cassava mosaic virus isolate Mah-2 segment DNA A, complete sequence. XX KW . XX OS Indian cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2733 RX DOI; 10.1007/s00705-005-0520-2. RX PUBMED; 15824887. RA Rothenstein D., Briddon R.W., Haible D., Stanley J., Frischmuth T., RA Jeske H.; RT "Biolistic infection of cassava using cloned components of Indian cassava RT mosaic virus"; RL Arch. Virol. 150(8):1669-1675(2005). XX RN [2] RP 1-2733 RA Rothenstein D.; RT ; RL Submitted (21-AUG-2004) to the INSDC. RL Molekularbiologie und Virologie der Pflanzen, University of Stuttgart RL Biologisches Institut, Pfaffenwaldring 57, Stuttgart 70550, Germany XX RN [3] RC Sequence update by submitter RP 1-2733 RA Rothenstein D.; RT ; RL Submitted (02-MAR-2005) to the INSDC. RL Molekularbiologie und Virologie der Pflanzen, University of Stuttgart RL Biologisches Institut, Pfaffenwaldring 57, Stuttgart 70550, Germany XX DR MD5; df0503b45fd4e76d20efe91b24a53c94. DR EuropePMC; PMC1079959; 15784145. XX CC On Mar 2, 2005 this sequence version replaced gi:52219377. XX FH Key Location/Qualifiers FH FT source 1..2733 FT /organism="Indian cassava mosaic virus" FT /segment="DNA A" FT /isolate="Mah-2; Maharastra-2" FT /mol_type="genomic DNA" FT /country="India:Maharashtra" FT /db_xref="taxon:31600" FT gene 135..491 FT /gene="AV2" FT CDS 135..491 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q643Y0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q643Y0" FT /protein_id="AAU29484.1" FT /translation="MWDPLLNEFPESVHGFRCMLAVKYLQLVECTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHNFNSRLEGSSPSELRQPIQQPCGCPYCPRHKKTILDKQTHES FT EAQVVSDIQKPRCS" FT gene 295..1065 FT /gene="AV1" FT CDS 295..1065 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q643X9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q643X9" FT /protein_id="AAU29483.1" FT /translation="MSKRPADIIISTPGSKVRRRLNFDSPYSSRAAVPTVRVTKRQSWT FT NRPMNRKPRWYRIYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGIGLTHR FT VGKRFCVKSVYILGKIWMDENIKTMNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1062..1466) FT /gene="AC3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /note="REn" FT /db_xref="GOA:Q643X8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q643X8" FT /protein_id="AAU29487.1" FT /translation="MDSRTGELITAAQAMNGVFIWEVTNPLYFKIIQHDHRPFVMNQDI FT ITVQIRFNHNLRKALGLHQCWMDFKVWTTLQPPTWRFLRVFKTQVLKYLDSLGVISINT FT VVNAVEHVLYNVIHGTNSVEQSNLIKLNIY" FT gene complement(1207..1614) FT /gene="AC2" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="TrAP" FT /db_xref="GOA:Q643X7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q643X7" FT /protein_id="AAU29486.1" FT /translation="MRPSSPSKDHYTQVPIKVQHRAAKRKAIRRKRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGNKSPLFQDHSARPQTVRNEPGHNNRPDTIQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT gene complement(1544..2599) FT /gene="AC1" FT CDS complement(1544..2599) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="Rep" FT /db_xref="GOA:Q643X6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q643X6" FT /protein_id="AAU29485.2" FT /translation="MSPPKRFQINAKNYFLTYPRCSLTKEEALSQIRNFQTPTNPKFIK FT ICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGTFQIDGRSARGGQQSANDAYAAALNSGCKSEALNILRELAPRDYLRDFH FT HISSNLDRIFTKPPPPYENPFPLSSFDRVPGELDEWFHENVMGRARPLRPRSIVIEGDS FT RTGKTMWSRALGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEGPLY FT SGTNQGPTQSC" FT gene complement(2158..2448) FT /gene="AC4" FT CDS complement(2158..2448) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q643X5" FT /protein_id="AAU29488.1" FT /translation="MRMGSLICTCSSSSKANTNARISDFSTWYHQPGQHISIQTFRELN FT PAPTSSPTSTRTVIPWNGEHFRSMDDRPEGVNNLQTTLTPQHLTAAVNQRL" XX SQ Sequence 2733 BP; 675 A; 581 C; 668 G; 809 T; 0 other; accggatggc cgcgcccccc tctttatggt ggcccccccc acgtggagat gtcccccact 60 cagaacgctc gctcaaagct tgtatatgtg tggtccccct ttaagtactt gggcaacaag 120 ttgttgcctg tacaatgtgg gaccctttac taaacgagtt ccctgagtct gtccacggtt 180 tccggtgtat gctcgccgtg aaataccttc agctggttga atgtacttat tctcctgata 240 cactcggtta cgatttaatt agagatttga tctctgttat tagggcgaag aattatgtcg 300 aagcgaccag cagatatcat aatttcaact ccaggctcga aggttcgtcg ccgtctgaac 360 ttcgacagcc catacagcag ccgtgcggct gtccctactg tccgcgtcac aaaaagacaa 420 tcctggacaa acagacccat gaatcggaag cccaggtggt atcggatata cagaagccca 480 gatgttccta agggctgtga aggcccatgt aaggtccagt cgttcgagtc gagacacgat 540 gtggtccata taggtaaggt catgtgcatc tctgacgtca ctcgtggaat tgggcttact 600 catcgggtgg gtaagaggtt ttgcgttaag tccgtttaca tccttggcaa gatatggatg 660 gatgaaaaca ttaagaccat gaatcacacg aatagcgtaa tgttcttcct tgtaagggat 720 cgtaggcctg ttgataagcc tcaggatttt ggtgaagtat ttaatatgtt tgataatgag 780 cccagtacag ctactgtgaa gaacatgcat cgtgatcgct atcaagttct caggaagtgg 840 agtgccactg tcactggtgg tcagtatgcg agcaaggagc aggctttagt taggcgtttc 900 tttagggtta ataattatgt tgtgtataac cagcaagagg ctgggaaata tgagaaccat 960 actgagaatg cgttaatgtt gtacatggcg tgtactcatg cctctaatcc tgtatacgct 1020 acgttgaaga ttagaatcta cttctatgat tcagtgagca attaataaat atttaatttt 1080 attaaattag actgctcaac actgttagtc ccatggatta cattgtacaa tacatgctct 1140 acggcgttta caacagtatt aatacttata actcctaagc tatctaagta tttcaatact 1200 tgggtcttaa ataccctcaa gaaacgccag gtcggaggct gtaaggtcgt ccagaccttg 1260 aaatccatcc agcattgatg tagtcccaac gctttcctca ggttgtggtt gaatcgtatc 1320 tggacggtta ttatgtcctg gttcattacg aacggtctgt ggtcgtgctg aatgatcttg 1380 aaatagaggg gatttgttac ctcccagata aagacgccat tcatcgcctg agctgcagtg 1440 atgagttccc ctgtgcgtga atccatggtt gtggcagtta atgtggacgt agtacgagca 1500 cccgcagttg agatctaccc ttttacgccg gatggcttta cgcttagcag ctctgtgttg 1560 gaccttgatt ggtacctgag tatagtggtc cttcgaggga gatgaaggtc gcatttttca 1620 gagcccaggc ttttaatgcg ctattctttt cttcgtccag gaattcttta tagctggaat 1680 tggggcctgg attgcagagg aagatagtgg gaatacctcc tttaatttga actggctttc 1740 cgtacttggt gtttgattgc cagtccctct gggcccccat gaattctttg aagtgcttta 1800 ggtagtgggg atcgacgtca tcaatgacgt tgtaccatgc atcattgttg tagaccttag 1860 gacttaaatc caggtgtcca cataggtaat tatgtggacc caatgcacgg gaccacatgg 1920 tcttgcccgt ccgactatcg ccttcgatta cgattgatct tggtctcaaa ggccgcgcac 1980 gacccatcac gttttcgtgg aaccactcgt cgagttctcc tggaactcgg tcaaacgaag 2040 agagagggaa agggttctca tatggaggtg gtggttttgt aaaaatccga tccaggtttg 2100 agctgatgtg atggaagtcc ctaagataat ccctaggtgc taattcccta aggatattta 2160 gagcctctga tttacagccg ctgttaagtg ctgcggcgta agcgtcgttt gcagattgtt 2220 gaccccctct ggccgatcgt ccatcgatct gaaatgttcc ccattccaag gtatcaccgt 2280 ccttgtcgat gtaggacttg acgtcggagc tggatttagc tccctgaatg tttggatgga 2340 aatgtgctga cctggttggt gataccaggt cgaaaaatcg ctgattctgg catttgtatt 2400 tgccttcgaa ctggatgagc acgtgcagat gaggctcccc attctcatgt agctccctgc 2460 atattttgat gaatttaggg tttgtaggtg tttgaaagtt cctaatttga gagagagcct 2520 cttctttagt taaggagcat cgagggtaag tgaggaaata gtttttagcg tttatttgaa 2580 aacgcttagg tggtgacatt ctctctcctc aatcggtact cagatagttt agcccctata 2640 ttaggtactc aatatataca tgagtaccaa atggcataga tgtaaataat gggaatataa 2700 tttgaattca aaagcggcca tccgtataat att 2733 //