ID   AY727903; SV 1; circular; genomic DNA; STD; VRL; 2724 BP.
XX
AC   AY727903;
XX
DT   21-SEP-2004 (Rel. 81, Created)
DT   27-APR-2025 (Rel. 144, Last updated, Version 3)
XX
DE   Corchorus yellow vein virus isolate Hoa Binh segment DNA A, complete
DE   sequence.
XX
KW   .
XX
OS   Corchorus yellow vein virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2724
RX   PUBMED; 16528050.
RA   Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.;
RT   "Corchorus yellow vein virus, a New World geminivirus from the Old World";
RL   J. Gen. Virol. 87(PT 4):997-1003(2006).
XX
RN   [2]
RP   1-2724
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (18-AUG-2004) to the INSDC.
RL   Science Research Centre, Faculty of Science, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 13ca7ddfedc612c41de0032333e407ff.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2724
FT                   /organism="Corchorus yellow vein virus"
FT                   /segment="DNA A"
FT                   /host="Corchorus capsularis (Jute mallow)"
FT                   /isolate="Hoa Binh"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="Viet Nam"
FT                   /note="submitted name=Corchorus yellow vein virus - [Hoa
FT                   Binh]"
FT                   /db_xref="taxon:333361"
FT   gene            236..1012
FT                   /gene="AV1"
FT   CDS             236..1012
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="CP protein"
FT                   /note="coat protein"
FT                   /protein_id="AAU29403.1"
FT                   /translation="MPKRDAPWRLMAGTSKVSRSSNYSPRGGVSDSGSYLPRRFSRASL
FT                   WANRPMYRKPRIYRTYRSPDVPKGCEGPCKVQSFEQRHDIAHTGKVICLSDVTRGNGIT
FT                   HRVGKRFCVKSVYILGKIWMDENIKVKNHTNSVMFWLVRDRRPFGSPMDFGQVFNMYDN
FT                   EPSTATVKNDLRDRYQVMHRFSAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATLKIRIYFYDSISN"
FT   gene            complement(1009..1401)
FT                   /gene="AC3"
FT   CDS             complement(1009..1401)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="REn protein"
FT                   /note="replication enhancer"
FT                   /protein_id="AAU29406.1"
FT                   /translation="MDLRTAEPITASQAENSAFIWEVPNPLYFRIIDAWEYNRRNILMF
FT                   QIRFNHNLRRRLHLHKCFLNFRIWTTSSWLIRSFFQVFCSRINRYLYNIGVIGINNVIR
FT                   AIQYAVDSLPYVECNEQQHIIKFNLY"
FT   gene            complement(1139..1564)
FT                   /gene="AC2"
FT   CDS             complement(1139..1564)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP protein"
FT                   /note="transactivation protein"
FT                   /protein_id="AAU29405.1"
FT                   /translation="MTGPRRTPSTSPSRSLSTAPSIKPRHRHAKKVVRRRRIDLECGCT
FT                   IYVSISCREDGFTHRGTHHCVSGREFRFYLGGSKSPLFQDNRRLGIQPEEHTNVPDPVQ
FT                   PQLAEASSSSQVFPEFPHLDDIQLADQEFFSSFLFKD"
FT   gene            complement(1449..2528)
FT                   /gene="AC1"
FT   CDS             complement(1449..2528)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="rep protein"
FT                   /note="replication-associated protein"
FT                   /protein_id="AAU29404.1"
FT                   /translation="MGSRFVKTASSFFLTWPRCPINKESALEQIKTLSLPTNIVYIRVC
FT                   EEKHQDGSPHLHALVQFQKKYRCTNCRLFDLSNPNSSQQYHCNIQTARSSSDAKSYIEK
FT                   DGVFCEWGEFKIDGRSSRGGQQSANDAYAKALNSGGKDEALTIIKELLPKDYVLQYHNL
FT                   NANLERIFAPPTTVYMPPFQTTTFNNVPEALTDWVTTNVADSAARPFRPISIIIEGPSR
FT                   TGKTLWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHFLKHMKEFMGAQRDWQS
FT                   NCKYGKPIQIKGGIPTIFLCNPGPQSSYKEFFEEEKNKAINDWAKKNSIYITITEPLYS
FT                   TVDQASTSSRQESGSSETY"
FT   gene            complement(2087..2377)
FT                   /gene="AC4"
FT   CDS             complement(2087..2377)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="C4 protein"
FT                   /protein_id="AAU29407.1"
FT                   /translation="MALRICMPWFNSRRSTDARTADCSIYPIQIHHNNTIVIYRLHAPP
FT                   PTPNRTSKKMEYSANGVNSRSTADHPEEDNNPQTMHTLKHLTAEVRTKLSQ"
XX
SQ   Sequence 2724 BP; 698 A; 537 C; 640 G; 849 T; 0 other;
     accgtgcagc agccccgctt ttgccgtacg ctttacacgt gggtgacgat tttattggaa        60
     tttgcaaaag taaagttatt tgttttattc agccaatcat tgaatgattg gcgcgcctaa       120
     ttgttagtgc cggtacttgc tgcgtaagtt tcaagagaat attaactgct ttgcgctatt       180
     ataaattgaa tttgaattgg attgtactgc tgtgggtcct tattcgataa ggataatgcc       240
     taagcgcgat gccccatggc gcttgatggc gggaaccagt aaggttagcc gctcatctaa       300
     ttattcgcct cgtggaggcg tttccgactc aggttcttat cttccacgta gatttagcag       360
     ggcctcacta tgggcaaaca ggcccatgta taggaagccc aggatctatc ggacctatag       420
     gtcccctgac gttcctaaag gttgtgaagg gccttgtaag gtccagtcat ttgaacagcg       480
     tcacgatatt gctcatacag ggaaggtcat atgtttatca gatgttacac gtggtaatgg       540
     tattacccac cgtgttggta aacgtttctg tgttaagtct gtatatattt taggtaaaat       600
     atggatggat gagaatatta aagttaagaa tcacactaac agtgttatgt tctggttagt       660
     tagggataga aggccgtttg gttcaccgat ggattttgga caggtgttca acatgtatga       720
     taatgagcca agtacagcga cagttaagaa cgatctccgt gatcgttatc aggtcatgca       780
     tcggttttct gcaaaggtta ctggtggaca gtatgctagc aatgagcagg ctctcgtgag       840
     gcgtttttgg aaggtcaata accatgtggt ttataaccat caagaagccg ctaagtacga       900
     gaatcacacg gagaatgcgt tgttattgta tatggcatgt actcatgcct ctaatcctgt       960
     gtatgcaact ttgaagatac ggatctactt ttatgattcg atatctaatt aataaagatt      1020
     gaattttatt atatgctgtt gttcattaca ttcaacataa ggcagtgaat ccacggcata      1080
     ttgaatcgct ctaattacat tattaatgcc tataacacct atattatata aataacgatt      1140
     aatccttgaa caaaaaactt gaaaaaaact cctgatcagc caactggatg tcgtccagat      1200
     gcggaaattc aggaaacact tgtgaagatg aagacgcctc cgcaagttgt ggttgaaccg      1260
     gatctggaac attagtatgt tcctccggtt gtattcccag gcgtcgatta tcctgaaata      1320
     gaggggattt ggaacctccc agataaaagc ggaattctct gcctgagacg cagtgatggg      1380
     ttccgcggtg cgtaaatcca tcttcacggc agcttatgct gacgtagatg gtgcagccac      1440
     actccagatc aatacgtctc cgacgaacca ctttcttggc gtgacgatgt cgaggcttga      1500
     tcgacggtgc tgtagagagg ctccgtgatg gtgatgtaga tggagttctt cttggcccag      1560
     tcattgattg ctttgttctt ttcctcttcg aagaactcct tatatgaaga ttgtggacca      1620
     ggattgcaga ggaagattgt tgggattcct cctttaattt gaataggttt cccgtacttg      1680
     cagttcgatt gccagtctct ctgggccccc ataaattcct tcatatgttt gaggaagtgc      1740
     ggatctacgt catcaatgac gttataccac gcattattag agtatacttt tgggctaaga      1800
     tccaaatgcc cacacagata attgtgaggg cctaaactcc tggcccataa tgttttacct      1860
     gttctggatg ggccttcgat tattatggat ataggtctga aaggccgcgc agcggaatcg      1920
     gccacatttg ttgtgaccca atctgttaat gcttccggta cattgttaaa cgtcgtcgtt      1980
     tggaatggcg gcatgtatac tgttgttggt ggagcgaata ttcgctctag attagcgtta      2040
     agattatgat actgtaaaac ataatctttt ggaagtaatt ccttaattat tgtgagagct      2100
     tcgtccttac ctccgctgtt aagtgcttta gcgtatgcat cgtttgcgga ttgttgtcct      2160
     cctctggatg atcggccgtc gatcttgaat tcaccccatt cgcagaatac tccatctttt      2220
     tcgatgtacg atttggcgtc ggaggaggag cgtgcagtct gtatattaca atggtattgt      2280
     tgtgatgaat ttggattgga tagatcgaac aatctgcagt tcgtgcatct gtacttcttc      2340
     tggaattgaa ccagggcatg cagatgcgga gagccatctt gatgtttttc ttcgcaaacc      2400
     ctaatataga cgatattagt tggaagggaa agtgttttaa tttgctctaa ggctgactct      2460
     ttgttgattg ggcatctagg ccaagttaaa aaaaaagaag atgctgtttt aacaaaacga      2520
     cttcccatct tgcgttttat atcggtacac accaaagtct ctgtgtaccg atatatcggt      2580
     acacaatata tactagtggc ctctataatg ctactaggcg tgcagcgcct tgatattccg      2640
     gacgcgaggg gtattcatgg tcatttgcca ctcagtttag cgctattttt gggttccgat      2700
     ccgctgctgc acgcctataa tatt                                             2724
//