ID AY707772; SV 1; linear; genomic RNA; STD; VRL; 2484 BP. XX AC AY707772; AY562497; XX DT 03-NOV-2004 (Rel. 81, Created) DT 18-NOV-2008 (Rel. 97, Last updated, Version 5) XX DE Fragaria chiloensis latent virus isolate CFRA 9087 segment RNA 3, complete DE sequence. XX KW . XX OS Fragaria chiloensis latent virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2484 RX DOI; 10.1016/j.virusres.2005.02.010. RX PUBMED; 15878214. RA Tzanetakis I.E., Martin R.R.; RT "New features in the genus Ilarvirus revealed by the nucleotide sequence of RT Fragaria chiloensis latent virus"; RL Virus Res. 112(1-2):32-37(2005). XX RN [2] RP 1-2484 RA Tzanetakis I.E., Martin R.R.; RT "Fragaria chiloensis coat protein gene"; RL Unpublished. XX RN [3] RP 1-2484 RA Tzanetakis I.E.; RT ; RL Submitted (01-MAR-2004) to the INSDC. RL Molecular and Cellular Biology & Botany and Plant Pathology, Oregon State RL University and USDA-ARS, 3420 Orchard Ave, Corvallis, OR 97330, USA XX RN [4] RC Sequence update by submitter RP 1-2484 RA Tzanetakis I.E.; RT ; RL Submitted (07-AUG-2004) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; fc8374a4d7a2bf9a97140172d3ed7ece. XX CC On Nov 2, 2004 this sequence version replaced gi:49616816. XX FH Key Location/Qualifiers FH FT source 1..2484 FT /organism="Fragaria chiloensis latent virus" FT /segment="RNA 3" FT /host="Fragaria chiloensis" FT /isolate="CFRA 9087" FT /mol_type="genomic RNA" FT /note="isolated from infected specimen CFRA 9087 deposited FT in National Clonal Germplasm Repository (NCGR)" FT /db_xref="taxon:255238" FT 5'UTR 1..305 FT CDS 306..1250 FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:Q5UKX4" FT /db_xref="InterPro:IPR002538" FT /db_xref="UniProtKB/TrEMBL:Q5UKX4" FT /protein_id="AAV40823.1" FT /translation="MAFAGSSRTINETLSRSRSVGVSSAFEFSESEWASTMSDLDKFYE FT DVLIQNAPTRKCFKIDLKNNVPIEPLRLQSKENRGVLRTMADKVKGCVYINHSIIYLVY FT IPSILESSTGVLTLKLFNTNTGEIIDVDTDAPANEAAIFVTRWPRSLHVTEGNGLTLLP FT SVNVIGCKQGAIVGTLYPMWDDSFSRKKSYEKEYPSLRFPIEMTDARSAVTDVKLLKGF FT TMQRMIGGGTSSDIAPEVVKVRSEPGKKAKTAIFKRVSTSKREFAGRPSSVSDDVLNSS FT NVAEGVTIPVNADEGKADFKKKRFQEGFTSDDC" FT CDS 1316..1975 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q5UKX3" FT /db_xref="InterPro:IPR002681" FT /db_xref="UniProtKB/TrEMBL:Q5UKX3" FT /protein_id="AAV40824.1" FT /translation="MAFCNVCGKQMPCGVVHRRGRPTQRSQNFARRGGMAPRPNTANNL FT AMPTAVRTEWEINGPNTQVRRFPGLVTVSKGVAIRSTGAGTYWGFAISTAFHNLMGQRV FT LCDALVMRFISDHSGGVVGVVRGYNPDHPTAPNALTRRRFHKGVATGLQFLAPTNQVVD FT EIADDIYIVFQFDTAFTANAVLLTRDRYLQHNAVPRVEIPADVLRTEALPVEDIRG" FT CDS 2075..2311 FT /codon_start=1 FT /product="ORF 3" FT /db_xref="UniProtKB/TrEMBL:Q5UKX2" FT /protein_id="AAV40825.1" FT /translation="MCEQAHDGYPEVNPAVLRPRFFSVPRTVRRSRRLNPRLVDEANLP FT YFTGECVRCGYTPKSLIDQREWECSSCYMLYAA" FT 3'UTR 2312..2484 XX SQ Sequence 2484 BP; 619 A; 474 C; 605 G; 786 T; 0 other; gaaagtaatt ctattacaac aatcaattca agtcttcgtg agtgtcagat tgtatcgtcg 60 ttcgtgaaat atattgcctt gaacttgcct aacggtggct tgcttgatcc ctatttcact 120 cgtcagttac atagtccaga agacttacgg agattgttag atttacacca tacacgatat 180 tgttattggt ttgcttgagg tccactcgct tactgtgaca tttgtcgtaa gaatcactta 240 gtgaagttgg tttacttgag gtccactcgt ttaccaaatc attttgcgat tatcaagctg 300 tgaagatggc ttttgctggt agttctcgta ctatcaatga aacactatcc agatctagat 360 ctgtgggtgt tagttcagct tttgaatttt ctgaatcgga atgggctagt accatgtctg 420 atttagataa attctatgaa gatgttctta ttcaaaacgc tcctactagg aagtgtttta 480 agattgattt aaagaacaat gttccgattg aaccattgag gttgcagtcg aaggagaatc 540 gtggtgtgtt acgaaccatg gctgataagg tcaagggttg tgtttacatc aatcactcaa 600 taatatactt ggtttacata cctagtatac ttgagtcttc caccggtgtt ttgacgttga 660 aattgttcaa caccaatacc ggtgagatta tcgatgttga taccgatgcc cctgcgaatg 720 aggctgcgat ctttgtgacg cggtggcctc gttcgttgca tgttactgaa ggtaacggtt 780 tgacgttgtt gccttcagtg aatgtcattg gatgtaagca aggtgccatt gttggcacgc 840 tttacccaat gtgggatgat tctttttcta ggaagaaatc ctatgaaaag gaatatcctt 900 ctttgagatt tccgatcgaa atgactgatg ccaggagtgc tgtgactgac gtgaaacttt 960 taaagggttt tacgatgcag cgtatgattg gaggtggtac ctccagtgat atagcacctg 1020 aggttgtcaa ggttcgtagt gaacctggaa agaaggcaaa aaccgctata tttaagcgtg 1080 tgtctaccag taagcgagag ttcgctggta gaccgagttc cgtttctgac gatgttttaa 1140 attccagcaa tgttgctgag ggtgtaacca taccggtaaa tgccgatgaa ggtaaagcag 1200 attttaagaa gaaaaggttt caggaaggtt ttacttccga tgattgttga gtgttgactt 1260 tgtcaacatc tcttgcgtta gcaatcatta cttcttctta ttttatactt attccatggc 1320 tttttgcaat gtatgcggaa aacaaatgcc ctgtggtgtt gtccacagga ggggtagacc 1380 gacacagcga tctcaaaatt tcgctcgtcg tggaggcatg gcccctcgac ctaataccgc 1440 caataacttg gcgatgccta ccgccgttcg cactgaatgg gaaattaatg gcccaaatac 1500 gcaagtgcgt cggtttccgg gacttgttac agtctcgaag ggtgtggcca taaggtccac 1560 aggcgctgga acctattggg gtttcgccat ttctactgcc tttcataatt tgatggggca 1620 aagagtgctt tgtgatgcac tagtcatgag atttatctct gaccattctg ggggtgttgt 1680 tggtgttgtt cgaggttata atcccgatca cccaactgct cccaatgcgt tgaccaggcg 1740 tcgcttccat aagggagtgg ctactggttt gcagttccta gcacctacta atcaggtggt 1800 agatgaaatt gcggacgata tttatatcgt ctttcaattt gacactgcgt ttaccgctaa 1860 cgctgtgtta ctcactcgag atcgttatct gcagcataat gcagttcctc gtgttgagat 1920 accggctgat gtgcttcgaa ctgaagcgtt accggtcgaa gatatacgcg gttagcaatt 1980 aggtcgggat atttcccgac ttcgggatgt atcccgacgt gctaaagttc ctaacgattt 2040 tattgttgga tgcgaaccgg cttacgacat tgatatgtgt gagcaggctc atgatggtta 2100 tcctgaggtt aatcctgcgg tcttgagacc gaggtttttc tcagtgccga ggacggttag 2160 acgttctcga aggctaaatc cacgtttagt ggatgaagcg aatttaccat acttcacagg 2220 tgagtgcgtg aggtgtggtt atactcctaa gtctctcatt gatcagagag aatgggaatg 2280 ttcaagctgt tatatgttgt atgcagcttg aagatttcta aaatgattat cttgttttaa 2340 tgcaagttaa gttggacaag gtccagtgta acttaagtaa gtttctccta tcgccatctg 2400 gatgggattt aagagactta tgccaaactc tttgagtttg atgccaattc agttttcgtc 2460 tgaattgatg cccgaaagga tggc 2484 //