ID AY707771; SV 1; linear; genomic RNA; STD; VRL; 2570 BP. XX AC AY707771; AY451391; XX DT 03-NOV-2004 (Rel. 81, Created) DT 18-NOV-2008 (Rel. 97, Last updated, Version 7) XX DE Fragaria chiloensis latent virus isolate CFRA 9087 segment RNA 2, complete DE sequence. XX KW . XX OS Fragaria chiloensis latent virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2570 RX DOI; 10.1016/j.virusres.2005.02.010. RX PUBMED; 15878214. RA Tzanetakis I.E., Martin R.R.; RT "New features in the genus Ilarvirus revealed by the nucleotide sequence of RT Fragaria chiloensis latent virus"; RL Virus Res. 112(1-2):32-37(2005). XX RN [2] RP 1-2570 RA Tzanetakis I.E., Barnes J., Martin R.R.; RT "Molecular detection of Fragaria chiloensis latent virus"; RL Unpublished. XX RN [3] RP 1-2570 RA Tzanetakis I.E., Martin R.R.; RT ; RL Submitted (28-OCT-2003) to the INSDC. RL Molecular and Cellular Biology & Botany and Plant Pathology, Oregon State RL University and USDA-ARS, 3420 Orchard Ave, Corvallis, OR 97330, USA XX RN [4] RC Sequence update by submitter RP 1-2570 RA Tzanetakis I.E.; RT ; RL Submitted (07-AUG-2004) to the INSDC. RL Dept. of Botany and Plant Pathology, Oregon State University and USDA-ARS, RL 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 43e3c9b07f14f1eaa7438414d5060f10. DR EuropePMC; PMC5491605; 28713347. XX CC On Nov 2, 2004 this sequence version replaced gi:38569937. XX FH Key Location/Qualifiers FH FT source 1..2570 FT /organism="Fragaria chiloensis latent virus" FT /segment="RNA 2" FT /host="Fragaria chiloensis" FT /isolate="CFRA 9087" FT /mol_type="genomic RNA" FT /note="isolated from infected specimen CFRA 9087 deposited FT in National Clonal Germplasm Repository (NCGR)" FT /db_xref="taxon:255238" FT 5'UTR 1..27 FT CDS 28..2388 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:Q5VI74" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5VI74" FT /protein_id="AAR24506.2" FT /translation="MFCPKILSFVPSSEPWVGSESLDASGDIPTIDDWYLLTNTVLAER FT LVIERRRQLEKVVGQYKTLLHFVGWCYLEQVVFKTSKYKGEFNTFPFLVERFFAAFDLE FT APQYEVLPMQSDCLSDFFDVGCVDLPLPIEEDTISLPSDFHRSISSLSYPSCGSSSMES FT GRTSSGGPESTSSDVCHEIYNAGPVDPMPQCSRRWSDYTSEEDECELVPLSGDTLPRGE FT IPNEIVSVSATVNRCLESSYMSTDIPDLGRFIEEPVEFDGFDRVVAVNDWWSGMKLVPN FT LGIPDDSDVIFSGILSSAPEVMQSAIDEFLPLHHQIDDRFFQEIVETSDISLELENCSF FT DLSSFKSWSSHESGCCSSLNSGMTSTRTNTFREAALAIKKRNMNVPAISSSCDIGKVSD FT DVVEKFFSRIIDVDKLIGLPIIGHGELAWFADYLKGKPVNEDMFVDPICLVSMDKYRHM FT VKSQLKPVEDNSLAFERPLPATITYHDKGKVMSTSPLFLALMNRLLMSLKSKISIPTGK FT FHQLFSLDAQVFDSVLEWKEIDFSKFDKSQQELHHEVQKKIFLRLGLPRDFCDTWFTSH FT VRSHISDPSGLRFSVNFQRRTGDAVTYLGNTVVTLAVLSYVYDLSDPNVLMVVASGDDS FT LIGSYRPLDRSREHLCSTLFNFEAKFPHNQPFICSKFLLTMPTKSGGRRVVAVPNPLKL FT LIKLGIRNLQEDQFDAWYTSWIDLIHYFNDEHLISVVAEMCSYRYLRKPSMFLKPAMCS FT FNNVFANKTKLMKFLFPSMVLRKDKRKRPPRKR" FT CDS 350..856 FT /codon_start=1 FT /product="unknown protein" FT /db_xref="GOA:Q5MNU0" FT /db_xref="UniProtKB/TrEMBL:Q5MNU0" FT /protein_id="AAV98386.1" FT /translation="MRYCRCSLIVCRISSMSVVLIYLFLSKRIPSVCLPIFIEVFLRCL FT TRHAVRQAWKVGVPVREVPRVRPVMFVTKFIMPDLLIRCLSVPVAGQIIPARKMSVNLF FT HLAVTPYREVRSQMRSLALVLRSIDAWRVLICLPIFPILDDLSKNRSNLMDSTVWLLSM FT TGGLG" FT misc_feature 365..424 FT /note="transmembrane region" FT 3'UTR 2389..2570 XX SQ Sequence 2570 BP; 629 A; 468 C; 599 G; 874 T; 0 other; gaaagttttg ttacattggt atatgtaatg ttttgcccaa aaattttatc tttcgttcct 60 tcttcagaac catgggttgg ttctgaaagt ttagatgcca gtggtgatat ccccaccatt 120 gatgattggt atttattaac caataccgtt ctcgctgagc gattggtgat agaacgaagg 180 cgacagcttg aaaaggttgt cggtcagtat aaaactctcc ttcattttgt cggttggtgc 240 tatcttgaac aagtagtatt taagacgtcg aagtataaag gtgagtttaa tactttccca 300 tttcttgtgg agcggttttt cgctgcattt gatttggaag cacctcagta tgaggtattg 360 ccgatgcagt ctgattgttt gtcggatttc ttcgatgtcg gttgtgttga tttacctctt 420 cctatcgaag aggataccat cagtctgcct tccgattttc atcgaagtat ttcttcgttg 480 tcttacccgt catgcggttc gtcaagcatg gaaagtgggc gtaccagttc gggaggtccc 540 gagagtacgt ccagtgatgt ttgtcacgaa atttataatg ccggacctgt tgatccgatg 600 cctcagtgtt cccgtcgctg gtcagattat accagcgagg aagatgagtg tgaacttgtt 660 ccacttagcg gtgacaccct accgcgaggt gagatcccaa atgagatcgt tagcgttagt 720 gctacggtca atcgatgctt ggagagttct tatatgtcta ccgatattcc cgatcttgga 780 cgatttatcg aagaaccggt cgaatttgat ggattcgacc gtgtggttgc tgtcaatgac 840 tggtggtctg ggatgaagtt agtcccaaat cttggtattc cggatgattc cgatgtgatt 900 tttagtggta ttttatcttc ggcccccgag gtaatgcagt cggccattga cgagttttta 960 ccacttcacc accagatcga tgacagattt ttccaggaga ttgttgaaac cagtgacatt 1020 tctcttgaat tggaaaactg ctcctttgat ttgtctagtt tcaaatcttg gagcagtcat 1080 gaaagtgggt gttgttcttc tttaaacagt ggtatgactt ctacaagaac gaatacgttt 1140 cgggaagctg ccctggctat aaagaaaaga aatatgaatg ttcccgcaat ttcttcaagt 1200 tgcgacattg gtaaagtttc cgatgatgtt gttgagaagt ttttctctcg catcattgat 1260 gttgacaaac ttattggttt acctattatc ggtcatggtg agttggcttg gtttgctgac 1320 tatcttaagg gaaaacccgt taatgaggat atgtttgttg atccgatatg tttagtgtct 1380 atggataaat acagacacat ggtgaagtct caattgaaac cagttgaaga taattctctg 1440 gcttttgaga ggcctttacc tgccaccata acatatcatg ataagggtaa agtgatgtcc 1500 acttcacctt tatttttggc tcttatgaat agacttctta tgagtttaaa gagcaagatt 1560 tctattccca ccggaaagtt tcatcagtta ttttcgttgg atgctcaggt gtttgattcc 1620 gtgttggaat ggaaggaaat tgacttttca aagtttgata agtctcaaca ggaattgcac 1680 catgaagttc agaagaagat tttccttcgt ttgggtttac caagggattt ttgtgatact 1740 tggtttacct ctcatgtccg ttcacatatc tctgatcctt ctggactgag attctccgtt 1800 aattttcaac ggagaacggg tgatgccgtg acatatttgg gaaatacagt cgtgactctt 1860 gctgttttga gttacgtcta tgatttgtct gacccaaatg tgttgatggt tgtggcatcg 1920 ggagatgatt cgttgattgg gtcatatcgt cctcttgata gatcaaggga gcacttgtgc 1980 tccacattgt ttaattttga ggcaaaattt ccgcacaatc aaccgtttat ttgcagtaag 2040 tttttattga ctatgcccac gaaaagtgga ggtcgtcgtg tggtggcggt tccgaatcct 2100 ttgaaattgc ttataaaact gggcattcgc aatttgcaag aggatcagtt cgatgcctgg 2160 tatacgagtt ggatcgattt gattcattat tttaatgatg agcatctcat atccgtcgta 2220 gccgagatgt gctcctatcg ttatcttagg aagcctagca tgtttttgaa acctgctatg 2280 tgttccttca acaatgtctt tgccaataag acaaagttga tgaagttttt gtttccctct 2340 atggtattga ggaaggacaa acgtaagaga ccgcctcgta agcggtaatt tcgtttgtcg 2400 tttatactaa aacaatcttg ttttaatgca agttaagttg gacaaggtcc agtgtaactt 2460 aggtaagttt ctcctatcgc catctggatg ggatttaaga gacttatgtc aaactctttg 2520 agtttgatgc caattcagtt ttcgtctgaa ttgatgcccg aaaggatggc 2570 //