ID AY706994; SV 1; linear; genomic RNA; STD; VRL; 6617 BP. XX AC AY706994; XX DT 01-SEP-2006 (Rel. 89, Created) DT 26-OCT-2006 (Rel. 89, Last updated, Version 2) XX DE Grapevine rupestris vein feathering virus polyprotein gene, complete cds. XX KW . XX OS Grapevine rupestris vein feathering virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6617 RA Rosa C., Zhang Y.-P., Rowhani A.K.; RT "Grapevine rupestris vein feathering virus Californian isolate"; RL Unpublished. XX RN [2] RP 1-6617 RA Rosa C., Zhang Y.-P., Rowhani A.K.; RT ; RL Submitted (06-AUG-2004) to the INSDC. RL Plant Pathology, UC Davis, One Shields Avenue, Davis, CA 95616, USA XX DR MD5; c6fdad4025be0c12508ece65e7d684e6. XX FH Key Location/Qualifiers FH FT source 1..6617 FT /organism="Grapevine rupestris vein feathering virus" FT /host="Vitis vinifera cultivar Cabernet" FT /mol_type="genomic RNA" FT /country="USA:California" FT /db_xref="taxon:204933" FT 5'UTR 1..266 FT CDS 267..6473 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q0IKR9" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q0IKR9" FT /protein_id="AAW33732.1" FT /translation="MAFPSNLSTVLPSHLYQRPAHALWFNPSSPQPFEVLPHMVPANFP FT HLFRGIPTPLERSMPVRSLLGDFRPRRFRPTTLYGGAAPTGPLIHPPYQPPSDLSPVEI FT TFVPAPQPGNPPPSGITRRFYRPALSGGGLKELVEILNPTVHRDTVCSPLVEAAAGPLR FT DSLQLYPYDIPQEHAKFLQTCGIQASGYGYKTHPHPVHKTIEIHLLFEHWMGLCRQPSS FT VLFMKPSKFSKLQARNNNFAELCNYSLVARDITRYPETSPTPPECSTWFMHDSIMYLSA FT EEVAGCFQACPHLERLYASLIVPPESSFTDLSLNPSLYRYRFHGDQLIYRLEENPSHSY FT QQPKAALKWLQTNSIQGNDIFLAITRLESWGPVHSLLITRGRPLVLTDDSLFFSSPDAV FT EIPAASSIQQSLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSA FT AWDNLQHFVTETAHHRQRTTYYLFNSTLARLSHWCRCHKLAIATSLTPLASASILLTLG FT GIDLLWKHSIKHLVVAHHYLVGSAPIHARLLPRSFVRQHYPRFSIALEPRVSAPVIRLP FT FSQTIRLGFLTTLAHHIPSLKRGRPRLSTPALLKAAFCLGLVTPPLLLMIRSFVGPDSP FT QSMSDAYNRYFHPSRWELSLERSPASVIPSPPAFLPSGTAPTPLEPRPADSPLEVPLVP FT SPRLHPDSPPPAEKQPELSPCEAAPAAPVLDASSKKAEETPSGLDMSATTILEAKVPVP FT VSRADEPPRPSDLLSASEPKEELLVSHTGTLTHTTPQPVSAAPEVEPLMIDASGAGPVD FT SSSVLHPGSYLPFSGTFPTRLRVSSLSPAPYPSLDCLLVSVSGATGFPKESLWQSLCGI FT LPDSQLDNDQVRTQGLSTDHFCALAFLHSLRCTFLTDAGQQEMGMEDATSIFTIRHTSG FT SPGHFELVRSSARPLLNGARPAADIVEHMKRFKVDGKILPFCEAHSYTSHVGRAKNLIS FT NMKNGFDGVLANIDPQHTNEARDRLLSLDGSLDIAKPRTVSLIHIAGFAGCGKSFPICQ FT LLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKL FT PRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLASEIKHLQPYMDMYCLWS FT HRIPRNVARFFRVKTTSQVEGTVTTSLVLAPGWKQLTNSMNAARTLNDCGFAATTIASS FT QGSTYSHPACINLDKNSSQLSHAHSLVALTRSKVGIMFTGDLSRLNPGSSSNLLFSKFK FT QGESVDLRSLFPFEFPCCPTITEPLSSRPKFCLGGAPWLAVNHLADKPLAPSDLPDLLV FT PEAPVILGSGESNAPQVSTHFLPETRRPLHFDVASAVPEPAKPSGVDPLDLASITPVYP FT GESFENLARTFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVP FT FDENLFAECIALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFG FT GWKACQTLALMHDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKP FT GERVANDYTSFDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNVSTQFGPLTCMRL FT TGEPGTYDDNTDYNLAVLHLEYLVGSTPCMVSGDDSLLGREPPRNPIWQAVKPLLALRF FT KKERTRYGEFCGYYVGCEGCIRSPMALFAKLMVCVDDGTIEEKMISYATEFSIGHSLGD FT AFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLSKLTWLSYSSYA FT YLSSLQRRALRGKAVRQHFPGDSKEVTELQGELLHAFSMSSTPRKLTGGLLLPPSPSMS FT NEAQQPASGRPSRDDHRSDRQPPLPLAPKVQESPALSLTIPFQWVALIIKSDSAAFTAD FT LAASTTLKKLTDPFRSCEITQLEVVLMPTLNAFNNPVTLHCVWRVNSIQPASGDELLYY FT GGQAITAGGPVSMNALATVPADLTRINPRIKSSVGYLDTPRLTGTTMKCATAQTLPLAY FT VMIRGMVSVSGPMGIKL" FT 3'UTR 6474..6617 XX SQ Sequence 6617 BP; 1264 A; 2418 C; 1386 G; 1549 T; 0 other; ctttgattct agctttcgct acactcaagt tctctcgggc gtccgttatc ggtcccagaa 60 gcgccgctcg gcagccctta acccccctgc tttgacgtga gtccgcttcg gccaactcac 120 ctctggcagt tccatcgttc cttctcgaac gagccccccc cttttctcca gtcagcctgc 180 ttctcactca gcacgctctc tttcgccttt tgccctttcc cactccaaat ccgcactttt 240 cttcccagct caacccgcta gtctccatgg ccttcccaag caacctctcc accgttctcc 300 caagccacct ttaccagaga ccagcccacg ctctgtggtt caacccatca agcccgcagc 360 cattcgaggt tctccctcac atggttccgg ccaatttccc ccacctcttc cgcggcattc 420 ccaccccgct ggagcgctcc atgccggttc gctcgcttct tggcgacttc cgacctcggc 480 gcttccgccc caccactctc tatggtggag ccgctccaac aggccctctc atccaccccc 540 cctatcaacc tccatcagat ctctctcctg ttgagatcac ttttgtcccg gctccccaac 600 ccggcaaccc tccaccctcg ggaatcaccc gccgcttcta ccgtcccgct ctctccggcg 660 gcggccttaa ggagctggtt gagattctca acccaaccgt ccaccgcgac actgtttgct 720 cacccctagt cgaggcagcg gccggccccc tccgcgactc actgcagctc tacccctacg 780 acattccgca ggaacatgcg aaattcctcc agacctgcgg gatccaagct tcagggtacg 840 gctacaagac tcacccacac cctgtccaca agacgatcga aatccacttg ctttttgagc 900 actggatggg cctctgccgt cagccctcgt ctgttctctt catgaaaccc tcgaagttct 960 ccaaacttca ggctcgcaac aacaatttcg cggagctatg caattacagc cttgtcgccc 1020 gcgacatcac ccgttaccct gagacctctc ctacccctcc ggagtgtagc acctggttca 1080 tgcatgactc catcatgtac ctctccgctg aagaagtggc tggctgcttc caagcctgcc 1140 cccacctcga gagactttat gcctctctca tcgtccctcc ggagtcctcc ttcacagacc 1200 tctccctcaa cccctcgctc tacaggtacc gcttccacgg tgatcaactg atttaccggc 1260 tcgaggaaaa cccgtctcac agctaccaac agcccaaggc tgctctcaag tggctgcaaa 1320 ccaacagcat ccaagggaac gatatctttc tcgcaatcac tcgcctagag agttggggtc 1380 ccgttcacag cttgctgatc acccgaggtc gtcccctcgt cttgactgac gactccctct 1440 tcttctcctc tcccgacgcc gtggaaatcc ccgcagcttc ctccatccaa caaagcttgc 1500 gccatcggtt ggtgccttcc gccgtgtacc actccctgtt catatacgtc agggctgtcc 1560 gcactctccg gcaaaccgat ccccaaggct acgttcgcac tcagagcaac aagcctgagt 1620 atgcttgggt cacctccgcc gcttgggata acctgcagca ctttgtgacg gagaccgcgc 1680 atcaccgcca acgcaccact tactacctct tcaactccac gctcgctcgc ctcagccatt 1740 ggtgtcgctg ccacaaactc gcgattgcca cttcgctcac ccctctagcc tctgcttcca 1800 tcctcctcac tctcggaggg atcgacctgt tgtggaagca ctcgataaag cacctcgtcg 1860 tggcccacca ttatttggtc ggttcagctc ctatccacgc tcgcctgctc ccgcgatcct 1920 tcgtccgaca gcattacccg cgcttcagca tcgctctaga gccgcgcgtc tccgcccctg 1980 tcatccgcct cccattctca cagaccatcc gcctgggctt tctgaccact ctcgcccacc 2040 acatcccgag cttgaagcgc ggccggccga ggttgtccac tccagccctt ctcaaagctg 2100 ctttctgctt gggcttggtg accccgcccc ttttgctcat gattcgctct tttgtcgggc 2160 ccgactctcc acagagtatg agcgacgcct acaaccggta cttccaccca tcccgctggg 2220 aactctctct cgagcgttcg cctgccagcg tcatcccttc ccccccagcc ttcttgccat 2280 ccggcactgc tcccactcct ttggagccac gccccgccga ctccccgttg gaggtgcctc 2340 ttgtcccttc cccaagattg cacccagaca gccctcctcc tgccgagaag cagcctgagc 2400 tttcgccgtg cgaagccgct cctgctgcgc ctgttctcga tgccagctcc aagaaagctg 2460 aagagacccc ttctggtctt gatatgtctg ccaccaccat tctcgaagcc aaggtcccag 2520 ttccggtttc tcgcgctgat gagccccccc gtccctccga tcttctctcc gcctcagagc 2580 ccaaggaaga gctgctcgtc tcacacaccg gtacgctcac ccacaccact cctcagcccg 2640 tttccgccgc acccgaagtg gaaccattga tgatcgacgc ttctggagcc ggtcctgtcg 2700 attcctcctc agttcttcac cctggttcct accttccctt cagtggtacc ttccccactc 2760 gtcttcgcgt gagctctctt tccccagcgc cttacccctc ccttgactgc ctcctcgtct 2820 ctgtctccgg agcgactgga ttcccaaaag agtccctgtg gcagagcctc tgcggcatct 2880 tacccgactc ccagctcgac aatgatcaag ttcgcacgca agggctcagc accgaccact 2940 tctgcgctct cgcctttctc cactctctgc gctgcacctt cctcacagac gccggccagc 3000 aagaaatggg catggaggac gcgacttcca tcttcacgat tcgtcacacc tctggaagtc 3060 cagggcactt cgagctcgtt cgatcttccg ctcgcccact tctcaatgga gcccgcccag 3120 ccgccgacat cgttgagcac atgaagcggt tcaaagtcga cggaaaaatt ctgcccttct 3180 gcgaagccca ttcctacact tctcatgtgg gtcgagccaa gaacctcatt agcaacatga 3240 agaacgggtt cgatggtgtg ctcgccaaca tcgacccgca gcacacgaat gaggctcgcg 3300 accggctcct ttctctcgac ggctcgcttg atatcgccaa gccccgcact gtctctctca 3360 tccatatcgc ggggttcgcc ggctgcggaa aatctttccc catctgccag cttcttaaga 3420 caaagccctg ccgcaactac aagatcgcgg tgcccacagt tgaactccgc aatgagtgga 3480 aagactctct caaatcctcc cctgctgatc gctggagact cggaacctgg gagtcttccc 3540 tcctgaagtc tgctcggatc gtcgttatcg atgaagtcta caagcttccg agaggttatc 3600 ttgatttagc catccatgct gactcaaccg cgcagctttt cattgtcctc ggcgaccctc 3660 tccaaggtga gtaccactcc actaacccca actccagcaa cgctcgtctg gctagcgaga 3720 tcaagcatct ccagccctac atggacatgt actgcttgtg gtcccaccgc atcccccgca 3780 acgttgcccg cttcttccgc gtcaaaacga cgtctcaggt ggaaggcacc gttaccacct 3840 ctctggttct cgctcctggt tggaagcagc tcaccaattc aatgaacgct gctcgcactc 3900 tcaacgattg tggcttcgct gcgacaacca ttgcttcctc tcaaggttcc acctattcgc 3960 accccgcctg catcaatctc gataagaatt cgagccagtt gtctcacgcc cactctcttg 4020 tcgcccttac caggtccaaa gtgggcatca tgttcactgg agacctctcc cgcctcaacc 4080 ccggctcatc ctccaatctc ctcttctcaa agttcaagca aggggaaagc gtagatctgc 4140 gctctctgtt ccccttcgaa tttccttgct gccccaccat cactgagcct ctctccagtc 4200 ggcccaagtt ctgtttggga ggcgctcctt ggctcgccgt caatcacctt gctgacaaac 4260 cgctggcacc ttctgacctc cctgaccttt tagttcccga agccccagta atcctagggt 4320 ctggagagag caacgctcca caagtgagca ctcacttcct tcccgaaact cggcggccgt 4380 tgcatttcga tgttgcgtcc gcggttcctg agcccgccaa gccctcagga gtcgaccccc 4440 tcgacttggc ctcgatcacc ccggtttacc ccggggagtc tttcgagaac ttagctcgca 4500 ctttcctccc agcgtctatt ggcaagaggt tgcgcttccg cccgtcatct gctccctatc 4560 gcatcacctc taaggatgag atcctaggct ccctgctttt cgatgctcac tgcacggcca 4620 tgcttcgcag cccctctgct tccgtgccct ttgatgaaaa cctcttcgca gagtgcatcg 4680 cactcaatga gttcgcccaa ctgagcagca aaactcaagc aatcatcatg gccaatcgcg 4740 accgctccga tcctgactgg cggtggtcag ctgttcgaat cttcgccaaa acgcagcata 4800 aagtcaacga ccactccatc tttggaggct ggaaagcttg ccagactttg gcgctcatgc 4860 acgacgccgt agttcttctc ctcggccccg tcaagaagta ccagcgaatc ttcgacgcag 4920 cagaccggcc cgccaacatc tttgtctacg ccggccacac cccttccgaa atggcgaact 4980 ggtgccgcgc aaatctgaag cccggggaac gggtcgcaaa cgattacacc agtttcgacc 5040 aatcccaaca cggggaggcc gtcgtttttg aacgcaagaa gatggaacgt ctcaacatac 5100 catcacatct catcgatctc catatccatc tgaagaccaa cgtctccacc cagttcgggc 5160 ctctcacctg catgcgtttg accggagagc ctggaactta cgatgacaac accgattaca 5220 acttggccgt cctccatctc gagtatctcg tgggctccac tccttgcatg gtatccggcg 5280 acgactccct tcttggtcgt gagccccctc gtaaccccat ctggcaggca gtcaaacctc 5340 tcctagccct gcgcttcaag aaggaaagaa cccgctatgg cgagttctgc ggctactacg 5400 ttggttgtga gggttgcatt cgctccccca tggctctttt cgccaagctg atggtttgcg 5460 ttgatgatgg caccatcgag gaaaagatga tttcttatgc caccgaattc tccattggcc 5520 actccctcgg cgacgccttt tggaatctcc tccccatcga tgctgtccca ttccagtccg 5580 ccgtcttcga cttcttctgc cgccacgcgc ctgaggatgt caaagtcatg ttcaagttgg 5640 gtcgcgttga agtgtctctc ttctcccatc tgctctccaa gctcacttgg ctctcgtact 5700 cctcctatgc ctatttaagc tctcttcagc gtcgcgctct ccgcggaaaa gccgtccgcc 5760 agcatttccc cggcgattct aaggaggtca ctgagctaca aggtgaattg cttcatgcct 5820 tttcaatgtc atcaacacct cgcaagctca ccggcggtct tctgctccca ccatcgccct 5880 ccatgtccaa tgaagcccag cagcccgcat ccggtcgtcc ttctcgcgat gaccatcgtt 5940 ctgatcgtca gcctcctctt cctctcgcgc ccaaagtcca agagtcgccg gcgctctcac 6000 tcaccatccc cttccagtgg gttgctctca taattaagag cgactcagcc gccttcaccg 6060 ctgacctcgc cgcttctacc actcttaaga agctgacgga tcctttccgc agctgcgaaa 6120 tcacccagct ggaggtggtt ctcatgccga ctctcaacgc cttcaacaat cctgtcaccc 6180 tccactgcgt ctggagggtc aactccatcc agcctgcttc cggcgacgag ctgctatact 6240 atggcggtca agccatcacc gctggcggcc ctgtcagcat gaacgctcta gccaccgtgc 6300 cggccgacct gacccgcatc aacccccgca ttaagtcgtc cgtggggtac ctggacactc 6360 ctcgcctcac cggcaccacc atgaaatgcg cgactgcgca aactctcccc ctggcctatg 6420 tcatgattcg tggcatggtc agcgtctctg gcccaatggg cattaaactc tgaacccctc 6480 ttctcttctc ttctctctcc cctgctctcc cttgcaccgg caacggtaat caagaaaagg 6540 tccgcaaagt gaccttggtg tgcttttagt ttctgctaaa aaaaaaaaaa aaaaaaaaaa 6600 aaaaaaaaaa aaaaaaa 6617 //