ID AY695933; SV 1; linear; genomic RNA; STD; VRL; 5723 BP. XX AC AY695933; XX DT 28-AUG-2004 (Rel. 81, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 5) XX DE Carrot red leaf virus strain UK-1, complete genome. XX KW . XX OS Carrot red leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5723 RX DOI; 10.1007/s00705-005-0537-6. RX PUBMED; 15883658. RA Huang L., Naylor M., Pallett D.W., Reeves J., Cooper J.I., Wang H.; RT "The complete genome sequence, organization and affinities of carrot red RT leaf virus"; RL Arch. Virol. 150(9):1845-1855(2005). XX RN [2] RP 1-5723 RA Huang L., Naylor M., Pallet D.W., Reeves J., Cooper J.I., Wang H.; RT ; RL Submitted (26-JUL-2004) to the INSDC. RL Plant Virology, Centre for Ecology and Hydrology, Mansfield Road, Oxford RL OX1 3SR, UK XX DR MD5; f7ca874a17b7309b24aa54b652c1a3a9. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5723 FT /organism="Carrot red leaf virus" FT /strain="UK-1" FT /mol_type="genomic RNA" FT /db_xref="taxon:66200" FT gene 29..778 FT /gene="p0" FT CDS 29..778 FT /codon_start=1 FT /gene="p0" FT /product="p0 protein" FT /note="ORF0" FT /db_xref="GOA:Q670I6" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q670I6" FT /protein_id="AAU04779.1" FT /translation="MLLITLKGTVSYYVPTDSSARLFAYKYFIHHVLALSFATLQLYNV FT EPCFYGNLPRALLYILPCILNNDYKMGGSAIWCKPDYIRELVLWGLVCGFYPRIQNRGR FT RGYRVNLQRLGNRRAYLSFLHRLDGRNLSENLLRRPEAFFTTVEDFSRTIGVFYQIRDR FT ALAHSYRELPLDRCHDLVGSLFHDSETGVVTYNQLHSTCPCAGYSLLINDSDLPCSDLA FT LFTAPYVPFNVSLGHDQIGHQVEIQEE" FT gene 159..3295 FT /gene="p2" FT CDS join(159..1529,1529..3295) FT /codon_start=1 FT /ribosomal_slippage FT /gene="p2" FT /product="RNA-dependent RNA polymerase" FT /note="ORF1 and ORF2; translated by -1 frameshift" FT /db_xref="GOA:Q670I5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q670I5" FT /protein_id="AAU04781.1" FT /translation="MSSRVFMAIFLVLCYISCPAFSTMTTKWAGLPSGASQIIFANLSY FT GDLFVDSTPEYKIGEGEVTGLTYKDSGIAELTSHSYTGLMGAILAKIYSDVQKPFSPLW FT KISLERLESFTKSGIELSHTLIESCLWTVVTIWLAAYSMIARLGWSLITNFTLPVLALA FT ILCLLTTVICRALIWLYSQLPMFLLTFPWAMIKLVTKLRFRRSKVIKEQACEGYTTFSI FT PQNPPKHSVVEIIHPDGSHSGYATCVKLHNGHNGLLTAYHVVSSEGKAVHSLRNGAKIK FT LDAFKPFFENEFLDISLFQGPPSWESALACSSVNMVCVNSLALCEARLFGFEGDQWKSR FT NAKIIGSYEKQVSVLSNTDKGDSGSAYFHGKNVVGVHSGYPTDGENFNLMAPIPNIPGL FT TSNKLVFETTAPQGRVFDDETLNYFDELCEEYSIEEARYIMQNRRGKNLEGKSQNQGNR FT ATLHRQRNKRRSKHPKDKAREYYATPSNGGPRRKSNTSSTGGHDGEDLRGSPKPSKHGG FT HRGENRRESGQAGCGEAQQIPRNARWEEDARGFEEYFARIYNWQVPPTSLQVPGFRDVG FT ATPKYYHSKQKEESKWGRKLTEQHPELAEKTAGFGWPQFGAQAELKSLRLQASRWLDRA FT QTAKTPSDAQREHVINRTVSAFAAAQTQTPSFCTKDKLTWPEFLENFKLAVNSLELDAG FT VGVPFVSYGLRTHRDWVENPKLLPVLARMTFDRLQKISEVNFSDMTPEELVQNGLCDPI FT RLFVKGEPHKQSKLDEGRYRLIMSVSLLDQLVARVLFQSQNKLEIALWRAVPSKPGFGL FT STDNQIENFVDCLAKQVGETPEEVIANWPKYLIPTDCSGFDWSVSDWLLEDDMEVRNRL FT TIDCTPLLKRLRAGWLKCISNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAA FT YHCGASWAMAMGDDALESIDTDLSVYKNLGFKVEVSAQLEFCSHIFKERNLAIPVNINK FT MLYKLIHGYNPECGNAEVLSNYLSAVVSVMNELRHDPALVSKLFQWLVPSAATKEF" FT gene 159..2021 FT /gene="p1" FT CDS 159..2021 FT /codon_start=1 FT /gene="p1" FT /product="p1 protein" FT /note="ORF1" FT /db_xref="GOA:Q670I3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q670I3" FT /protein_id="AAU04780.1" FT /translation="MSSRVFMAIFLVLCYISCPAFSTMTTKWAGLPSGASQIIFANLSY FT GDLFVDSTPEYKIGEGEVTGLTYKDSGIAELTSHSYTGLMGAILAKIYSDVQKPFSPLW FT KISLERLESFTKSGIELSHTLIESCLWTVVTIWLAAYSMIARLGWSLITNFTLPVLALA FT ILCLLTTVICRALIWLYSQLPMFLLTFPWAMIKLVTKLRFRRSKVIKEQACEGYTTFSI FT PQNPPKHSVVEIIHPDGSHSGYATCVKLHNGHNGLLTAYHVVSSEGKAVHSLRNGAKIK FT LDAFKPFFENEFLDISLFQGPPSWESALACSSVNMVCVNSLALCEARLFGFEGDQWKSR FT NAKIIGSYEKQVSVLSNTDKGDSGSAYFHGKNVVGVHSGYPTDGENFNLMAPIPNIPGL FT TSNKLVFETTAPQGRVFDDETLNYFDELCEEYSIEEARYIMQNRRGKNLEGKSQNQGNE FT QRCTASATNGAPNIQKTKRVNTTPPPVMEVPVESQTPLPQEDMMGKILEALLSRVNMAD FT IEAKIVEKVAKQAVEKHNKSRGTRGGKKTPEASKNTSQESTTGKYRPPHSRSPGSVTSE FT QPPNTTTPNKRRNQNGGGNSRSSTQSWQRKQPVSGGPSSGPKQS" FT gene 3511..5613 FT /gene="p5" FT CDS 3511..5613 FT /codon_start=1 FT /transl_except=(pos:4135..4137,aa:OTHER) FT /gene="p5" FT /product="CP readthrough protein" FT /note="ORF3 and ORF5; translated by in-frame readthrough of FT ORF3 stop codon" FT /db_xref="GOA:Q670I2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q670I2" FT /protein_id="AAU04784.1" FT /translation="MATYGLTKRATGIKPMVVVNTPSRRPRRRTRTKPIVVVQTARTGR FT RRRRRRGRGSGNPRTMGGSGGGISSQKFVFSKDNIAGSSGGVLTFGKDLSDHPAFSNGL FT LKAFHQYKITNMRVRYISEAPSTAGGSISYELDPSCELDKLSSTIYKFGVLKNGQASWS FT AEKINGKEWHSSSENQFRFLWKGNGSNSTVGSFEIHYTCLFQNPKXVDAEPGPSPGPSP FT PPLPTPTPEPTPKQHERFIVYVGSPTMDIQARENDDIITLTEPGPQNWRRIQDEDMNEV FT SLDSRFWTNSDLKAKPMFYFPVPAGSWSVDITCEGYQPTSDPTKQGDNRSDGLIAYSAD FT NNDNLWNVGQTGSLKISNLRGINTFKAGHPKLVVNGCNFNDGQVMERDGTLSFHVQTEK FT DGSFFLTGPPVQKQGRYNYTVSYGEWTKRILEFGLITVVLDEHLDNSGSNKFKRPPRNG FT HQWAGLVTDTVMENTVSDKTPDPPKSKRKLEPEKANSDNKLPEPQKRKLVIDPKLDEVE FT VESIPDAPEDFNWATLGIPRGKGPASLAGFNDTELARGKDQSSDDELPSHFSAPGLDEI FT PAKPQPVDLSQTSFDYGTHIPNTDDLGMFDRPGDKPVVSGILDKQRVKSFGKRLLPALS FT GSTTSSLQGGTLRQKYSDATRKYMSSEEVVKANKIRTSLGKTALANYLKSLNLHERVGS FT SPSQEQ" FT gene 3511..4137 FT /gene="p3" FT CDS 3511..4137 FT /codon_start=1 FT /gene="p3" FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q670I1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q670I1" FT /protein_id="AAU04782.1" FT /translation="MATYGLTKRATGIKPMVVVNTPSRRPRRRTRTKPIVVVQTARTGR FT RRRRRRGRGSGNPRTMGGSGGGISSQKFVFSKDNIAGSSGGVLTFGKDLSDHPAFSNGL FT LKAFHQYKITNMRVRYISEAPSTAGGSISYELDPSCELDKLSSTIYKFGVLKNGQASWS FT AEKINGKEWHSSSENQFRFLWKGNGSNSTVGSFEIHYTCLFQNPK" FT gene 3521..4090 FT /gene="p4" FT CDS 3521..4090 FT /codon_start=1 FT /gene="p4" FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q670I0" FT /protein_id="AAU04783.1" FT /translation="MDSPREQQELNPWLLSTHLQGAHVDVHGLSQSLWYKPHELDEDDE FT DAEDAALVTHEQWEDPEAESVARSLCFRRTTSRAAPVESSPSARIYQTTLLSAMDYSRH FT STNIKSQTCEYVTSRKPHQPPVARSLMSWTPVVNSINFRAQSTNSGSSRMVKPLGALKR FT LMGRSGTPLRRTNSGSSGREMEVIRR" XX SQ Sequence 5723 BP; 1650 A; 1378 C; 1346 G; 1349 T; 0 other; acaaaacaaa ccgagggaga taatcttgat gctcttgatc actcttaaag gaacagtatc 60 ttactacgtc ccgacagact catcagctcg attatttgct tacaaatact ttatacacca 120 cgtgcttgct ttgtcatttg caactttaca attgtacaat gtcgagccgt gtttttatgg 180 caatcttcct cgtgctctgc tatatatcct gccctgcatt ctcaacaatg actacaaaat 240 gggcgggtct gccatctggt gcaagccaga ttatattcgc gaacttgtcc tatggggact 300 tgtttgtgga ttctaccccc gaatacaaaa taggggaagg agaggttacc gggttaactt 360 acaaagactc gggaatcgca gagcttacct ctcattctta cacaggcttg atgggcgcaa 420 tcttagcgaa aatctactca gacgtccaga agcctttttc accactgtgg aagatttctc 480 tcgaacgatt ggagtctttt accaaatcag ggatagagct ctcgcacact cttatagaga 540 gttgcctctg gaccgttgtc acgatctggt tggcagccta ttccatgata gcgagactgg 600 ggtggtcact tataaccaac ttcactctac ctgtccttgc gctggctatt ctctgcttat 660 taacgacagt gatttgccgt gctctgattt ggctctattc acagctccct atgttccttt 720 taacgtttcc ttgggccatg atcaaattgg tcaccaagtt gagattcagg aggagtaagg 780 tgatcaagga acaagcctgc gagggataca ctacattttc tatcccccaa aaccccccaa 840 aacattccgt ggtggaaata attcacccag acggatccca ctcaggatat gccacctgtg 900 taaaattgca caatggccac aatgggcttt taacagctta tcacgtggtt tctagtgaag 960 gtaaggctgt ccattcgctc cgaaacggtg ccaagataaa gttggatgct ttcaagccct 1020 tctttgaaaa tgaattcttg gatataagtc tgtttcaggg gcctccgagt tgggaaagtg 1080 ccttggcttg ctcgagcgta aacatggttt gcgtaaactc gcttgccttg tgcgaagccc 1140 gtctcttcgg attcgagggg gatcaatgga agtccaggaa tgcgaagata atcggaagct 1200 atgaaaaaca agtttccgtt ttgtctaaca cggacaaggg ggatagtggt tctgcctatt 1260 ttcatggcaa gaatgtggta ggggtgcact ccggttatcc aacagacgga gaaaatttta 1320 atctcatggc cccaatcccc aacatccccg gtttaacctc caacaagctg gtcttcgaaa 1380 ccacagctcc acagggtcga gtttttgatg atgaaactct caattacttt gacgagctct 1440 gtgaagagta ttcaatagaa gaagccagat acataatgca aaacaggaga gggaaaaacc 1500 tagaagggaa atcccagaac cagggaaacg agcaacgctg caccgccagc gcaacaaacg 1560 gcgctccaaa catccaaaag acaaagcgcg tgaatactac gccaccccca gtaatggagg 1620 tccccgtcga aagtcaaaca cctcttccac aggaggacat gatggggaag atcttagagg 1680 ctctcctaag ccgagtaaac atggcggaca tcgaggcgaa aatcgtcgag aaagtggcca 1740 agcaggctgt ggagaagcac aacaaatccc gcggaacgcg cggtgggaag aagacgccag 1800 aggcttcgaa gaatacttcg caagaatcta caactggcaa gtaccgccca cctcactcca 1860 ggtccccggg ttccgtgacg tcggagcaac ccccaaatac taccactcca aacaaaagga 1920 ggaatcaaaa tgggggcgga aactcacgga gcagcaccca gagctggcag agaaaacagc 1980 cggtttcggg tggccccagt tcggggccca agcagagtta aaatctctgc ggctgcaagc 2040 gtcaaggtgg ctggaccgtg cccagaccgc caaaactcct tctgacgcac aaagagagca 2100 cgtgattaac cgtacagtta gcgccttcgc ggctgctcaa actcaaactc cgagtttctg 2160 tacgaaggac aagttgacat ggcccgaatt tcttgaaaat tttaagttgg ccgtcaactc 2220 tctggaatta gacgctggtg tgggagtccc ttttgtctct tatggcttaa ggacacaccg 2280 cgattgggtt gaaaatccca agctcctacc cgttctcgcg agaatgactt ttgatcgact 2340 acagaagata tcagaagtta attttagcga catgacaccg gaggagctag ttcaaaacgg 2400 gctctgcgat cctatcagac tattcgtcaa gggagagcct cacaaacaga gcaaactcga 2460 tgaaggccgc taccgcctca taatgagtgt gtcattacta gaccaattgg tagcccgggt 2520 cttgttccag tctcagaaca agttagaaat cgcgctttgg agagcagtac cttcaaaacc 2580 cggatttggc ctttccacgg acaatcaaat tgaaaatttt gtagattgtc tagccaagca 2640 agtgggggag acaccagaag aggtcatagc taactggcct aaatatttaa tccccacaga 2700 ttgctcaggt ttcgattggt cggtttcaga ctggcttctc gaagatgaca tggaggtgag 2760 aaatcgcttg accattgact gcacccctct tttaaagagg ctgcgagcag gatggttaaa 2820 atgcatttcc aactctgtct tgtgcctttc tgatggcacc ctgttagccc aaactgtccc 2880 aggggttcag aagagtggat cgtataacac gagttcctct aattctagaa tccgggttat 2940 ggcagcctat cattgtggcg cctcttgggc tatggcaatg ggcgatgatg ccctggaaag 3000 catagacacg gacctatccg tgtataaaaa tttaggtttt aaagtcgagg tttcagcaca 3060 actggaattt tgctctcaca tatttaagga gagaaacctc gccattccgg tgaatatcaa 3120 caaaatgttg tataaactta tccacgggta caatccggaa tgtggaaacg cggaagtcct 3180 cagcaactac ttaagtgctg tggtctccgt catgaatgag ctgagacatg atccagctct 3240 cgtttccaaa ctcttccagt ggctggttcc cagtgccgcc acaaaagaat tctaggaaga 3300 gaactgaagc tagccgagaa acacgttgtt gcaatcgtcg gaagcaaagc caactacaag 3360 aaagccacca tagattataa atttttagca ggtaccgcca caggattcat tttagcgata 3420 ccaatctgtg tgataggctt atactacgtc tatcttaaaa tatcctctaa catacaatca 3480 atcgtaaacg aatacggcag agggtaattt atggccacgt atggactcac caagagagca 3540 acaggaatta aacccatggt tgttgtcaac acaccttcaa ggcgcccacg tcgacgtaca 3600 cggactaagc caatcgttgt ggtacaaacc gcacgaactg gacgaagacg acgaagacgc 3660 agaggacgcg gctctggtaa cccacgaaca atgggaggat ccggaggcgg aatcagtagc 3720 cagaagtttg tgttttcgaa ggacaacatc gcgggcagct ccggtggagt cctcaccttc 3780 ggcaaggatt tatcagacca ccctgctttc agcaatggac tactcaaggc attccaccaa 3840 tataaaatca caaacatgcg agtacgttac atctcggaag ccccatcaac cgccggtggc 3900 tcgatctctt atgagctgga ccccagttgt gaactcgata aactttcgag cacaatctac 3960 aaattcgggg tcctcaagaa tggtcaagcc tcttggagcg ctgaaaagat taatgggaag 4020 gagtggcact cctcttcgga gaaccaattc aggttcctct ggaagggaaa tggaagtaat 4080 tcgacggtag gttcatttga aatacattac acctgccttt tccaaaatcc taaataggta 4140 gacgcggaac cggggcctag tccaggccca agcccccccc ccctcccaac cccaacccca 4200 gaacccactc cgaagcaaca tgagcgtttt atagtgtatg taggctcgcc cactatggat 4260 atacaggccc gagagaatga tgatatcata accttgacgg agcctggacc acaaaattgg 4320 cgccgcatac aagatgagga catgaacgag gtttccttag attcccgttt ttggaccaac 4380 tcagatctta aagccaaacc catgttttac ttcccagttc ccgctggtag ctggtcagtc 4440 gacataacct gtgaaggata tcagccgact tcagacccta caaagcaagg tgacaatagg 4500 agtgatggat tgatagccta ctctgctgac aataatgaca atttgtggaa tgtcggtcag 4560 acaggcagtc ttaagatttc caatttgcga ggtataaaca ccttcaaagc tggtcatccg 4620 aaactggtgg taaatgggtg caattttaat gatgggcagg tgatggagag ggatgggact 4680 ctttcattcc atgtacagac agagaaagat ggaagcttct tcctcactgg acctcccgta 4740 cagaaacagg gaagatacaa ctataccgtt tcttatggtg agtggaccaa acgaatttta 4800 gagttcggct tgataaccgt tgtcttagac gaacatttag acaactccgg ttccaacaaa 4860 tttaaaagac cccctaggaa tggacaccag tgggccggtc tcgtgaccga tacggtgatg 4920 gaaaacaccg tttctgataa aaccccagac ccgccaaagt ctaaacgtaa acttgagccg 4980 gagaaagcaa actccgataa taaactcccg gaacctcaaa agcgaaagct tgtaatagat 5040 ccaaagttgg atgaggttga agtggagtca atacccgatg caccagaaga ttttaactgg 5100 gccactcttg gcataccaag aggtaaaggt ccagctagtc tagccgggtt taacgacact 5160 gaactggcaa ggggaaaaga ccagagtagt gatgacgaat taccatctca tttttctgct 5220 cctggtttag atgaaatacc cgccaaacca caaccggtgg atctctcgca gacctcgttc 5280 gactacggaa cccacatacc taatacagat gatctcggga tgtttgatcg accaggtgat 5340 aagcccgttg tttcaggaat tcttgataaa cagcgggtta agagttttgg aaaacgcctt 5400 ttgcccgcgt taagcggtag cacaactagt tcccttcaag gaggcacttt gagacagaag 5460 tattcagatg ctacacgaaa gtacatgtca tctgaagaag tagttaaggc taacaaaatt 5520 cgaacatcgt tagggaaaac ggctttagcc aattatctta aatcccttaa cctgcatgag 5580 agagtaggga gctccccctc acaagagcaa tgaagcgcca aacttcaata aaattggaac 5640 gaaaggctta aaactgagta ggcacgaatc tccgttggag aagcgagtcg gtaaagcgta 5700 ccctctcctc gggatttcgg tgt 5723 //