ID   AY685219; SV 1; linear; genomic RNA; STD; VRL; 1630 BP.
XX
AC   AY685219;
XX
DT   23-AUG-2004 (Rel. 80, Created)
DT   03-DEC-2009 (Rel. 103, Last updated, Version 2)
XX
DE   Freesia mosaic virus isolate Spiranthes polyprotein gene, partial cds.
XX
KW   .
XX
OS   Freesia mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1630
RA   Guaragna M.A., Ndum O., Jordan R.;
RT   "Detection and characterization of two previously undescribed potyviruses
RT   in the terrestrial orchid Spiranthes cernua";
RL   Acta Hortic. 722:209-218(2006).
XX
RN   [2]
RP   1-1630
RA   Jordan R.;
RT   ;
RL   Submitted (13-JUL-2004) to the INSDC.
RL   Floral & Nursery Plants Research Unit, US National Arboretum, USDA-ARS,
RL   10300 Baltimore Ave, Beltsville, MD 20705, USA
XX
DR   MD5; a56a8788b2e1c4b1bdb8a69605717cdb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1630
FT                   /organism="Freesia mosaic virus"
FT                   /host="Spiranthes cernua 'Chadd's Ford'"
FT                   /isolate="Spiranthes"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:421012"
FT   CDS             <1..1455
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q68KG7"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q68KG7"
FT                   /protein_id="AAT99071.1"
FT                   /translation="GQPSTVVDNTLMVILAMHYSMEKQGWKRNESKERLVFFANGDDLI
FT                   IAVKPGYEGILDSLAVSFKELGLIYDFSERCHDRQELWFMSHQGHLIDGMYIPKLERER
FT                   IVSILEWDRSHAIEHRAEAICAAMIEAWGYPDLLLEIRKFYAWILDHDMFHDLAAIGKL
FT                   PYIAETALRKLYTDRDCEDEELLHYLRAFNFEGELVGTDEVRYQATSTPEQLDAGAEAE
FT                   RRRKARSGETEQPIKGQEREIAKNSEKDVDVGSRASKSVPRLAKLKVRMKVPTTARGPV
FT                   LDLDHLLEYKPDQIDLSNARATKQQFDAWFNGVQNAYELDDIQMKILMNGLMVWCIENG
FT                   TSPDITGVWTMMDGDEQVEYPLRPVIENAKPTLRQVMRHFSDMAEAYIEMRNAEKPYMP
FT                   RYGLQRNLRDYSLARVAFDFYEITSKTSVRAREAHMQMKAAAVANTTAKMFGLDGNIGT
FT                   QEENTERHTVTDVSANMHSLLGVRHM"
FT   mat_peptide     <1..621
FT                   /product="nuclear inclusion b protein"
FT                   /note="NIb; replicase"
FT   mat_peptide     622..1452
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1456..1630
XX
SQ   Sequence 1630 BP; 503 A; 291 C; 431 G; 405 T; 0 other;
     gggcagccat caacagttgt ggataacaca ctgatggtaa ttttggcaat gcattatagc        60
     atggagaagc aaggatggaa acgtaacgaa tcaaaggaac ggttggtctt ctttgcaaat       120
     ggtgatgact tgatcatagc agtgaaacct ggctacgagg ggattctaga ttctctagca       180
     gtatctttca aggagttagg tttgatatat gatttttcag agcgatgtca cgataggcag       240
     gaattatggt tcatgtcaca tcaaggacat ttaattgatg ggatgtatat tccaaaactt       300
     gagcgagagc ggattgtttc tatattggaa tgggatagaa gtcatgccat cgaacacaga       360
     gcagaggcaa tttgcgcagc tatgattgaa gcatgggggt accctgatct tcttttggaa       420
     atcagaaaat tttacgcatg gattcttgac cacgacatgt ttcacgattt ggcagcaata       480
     ggcaagttgc cgtatattgc tgagacagca ctgaggaaat tatacacaga tcgtgattgt       540
     gaagatgaag agctgttaca ttaccttaga gcttttaact ttgaaggaga gctggtggga       600
     acggacgagg tgcgatacca agcaaccagc acaccagagc aacttgacgc tggggctgag       660
     gctgagcgaa ggcgaaaagc aaggagtggg gagacagagc aaccaattaa aggacaggag       720
     cgcgaaattg caaagaatag cgaaaaggac gtggatgtgg gttcacgagc aagcaaatca       780
     gtgccaaggt tggcaaaatt gaaggttcga atgaaggttc caacaacagc aagaggtccc       840
     gtcttggatc tggatcatct tcttgagtac aaaccagatc aaattgatct atcgaacgca       900
     cgggcgacga agcaacaatt tgacgcctgg ttcaatggag tgcaaaatgc atatgagctg       960
     gacgacattc agatgaagat cttgatgaac ggcttaatgg tctggtgcat tgagaatgga      1020
     acctcaccag atatcacggg tgtgtggacg atgatggacg gtgatgaaca agttgagtac      1080
     ccactgcgac ccgtgattga aaatgcaaag cctacgctga gacaagtcat gcgtcatttc      1140
     tcagacatgg ccgaggccta tatagaaatg aggaatgcag agaaacccta catgccacgg      1200
     tatggtttac agagaaatct gagagattat agcctagctc gggtcgcatt cgatttttac      1260
     gagattacat ctaaaacctc agttagagct agagaagcgc acatgcagat gaaagctgca      1320
     gccgtcgcaa acactacggc gaagatgttt ggtcttgatg gtaatatcgg gacacaagag      1380
     gaaaatactg aacgacatac agtcactgat gtgagtgcta atatgcatag tctgttgggt      1440
     gtacgtcaca tgtaaagtgt ttggagtatt ttcatgctag tacttatata actatagacg      1500
     ctaagtttta agtgagtgtt tcactccgtg tggtaagata tatagtacta gaaaacgaag      1560
     gactacaact gtaggaggct cttgtgtggc tatgccacga atgcgtctta cctttgtata      1620
     cacctttaat                                                             1630
//