Dbfetch

Dbfetch

ID   AY682694; SV 1; linear; genomic RNA; STD; VRL; 674 BP.
XX
AC   AY682694;
XX
DT   03-AUG-2004 (Rel. 80, Created)
DT   22-JUN-2005 (Rel. 84, Last updated, Version 2)
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DE   Beet necrotic yellow vein virus isolate Swaffham 13K transport protein
DE   gene, complete cds; and 15K transport protein gene, partial cds.
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KW   .
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OS   Beet necrotic yellow vein virus
OC   Viruses; Riboviria; Benyviridae; Benyvirus.
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RN   [1]
RP   1-674
RX   DOI; 10.1016/j.jviromet.2004.10.008.
RX   PUBMED; 15664049.
RA   Ratti C., Clover G.R., Autonell C.R., Harju V.A., Henry C.M.;
RT   "A multiplex RT-PCR assay capable of distinguishing beet necrotic yellow
RT   vein virus types A and B";
RL   J. Virol. Methods 124(1-2):41-47(2005).
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RN   [2]
RP   1-674
RA   Ratti C., Clover G.R.G.;
RT   ;
RL   Submitted (09-JUL-2004) to the INSDC.
RL   Department of Agroenvironmental Sciences and Technology, University of
RL   Bologna, Viale Fanin, 44, Bologna, Bo 40126, Italy
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DR   MD5; 72337a51282482105ccf1d5c433021da.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..674
FT                   /organism="Beet necrotic yellow vein virus"
FT                   /map="TGB region"
FT                   /segment="RNA2"
FT                   /isolate="Swaffham"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:31721"
FT   CDS             2..358
FT                   /codon_start=1
FT                   /product="13K transport protein"
FT                   /db_xref="GOA:Q6B4K6"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q6B4K6"
FT                   /protein_id="AAT81569.1"
FT                   /translation="MSREITARPNKNVPIVVGVCVVAFFVLLAFMQQKHKTHSGGDYGV
FT                   PTFSNGGKYRDGTRSADFNSNNHRAYGCRGSGGSVSSRVGQQLIVLAIVSVLIVSLLQR
FT                   LRSPPEHICNGACG"
FT   CDS             342..>674
FT                   /codon_start=1
FT                   /product="15K transport protein"
FT                   /db_xref="GOA:Q6B4K5"
FT                   /db_xref="InterPro:IPR010470"
FT                   /db_xref="UniProtKB/TrEMBL:Q6B4K5"
FT                   /protein_id="AAT81570.1"
FT                   /translation="MVLVVKVDLSNIVLYIVAGCVVVSMLYSPFFSNDVKASSYAGAIF
FT                   KGSGCIMDRNSFAQFGSCDIPKHVAESITKVATKEHDVDIMVKRGEVTVRVVTLTETIF
FT                   IILSRLF"
XX
SQ   Sequence 674 BP; 175 A; 111 C; 168 G; 220 T; 0 other;
     aatgtctagg gaaataaccg ctcgacccaa taagaatgtg cctattgttg ttggtgtttg        60
     tgttgtggct ttctttgtat tgctggcgtt catgcagcaa aaacataaga cacattctgg       120
     gggtgattac ggagtcccaa cattttctaa cggtggtaaa tatagagacg gtacaagatc       180
     agctgatttt aatagtaaca atcatcgtgc ttacgggtgc cgtgggtctg ggggtagcgt       240
     tagtagtcga gttgggcagc aacttattgt gttagctatt gtttctgtgt taatagtgtc       300
     actattacaa cgattaaggt ctccaccaga acacatttgt aatggtgctt gtggttaaag       360
     tagatttatc taatattgta ttgtacatag ttgccggttg tgttgttgtc agtatgttgt       420
     actcaccgtt tttcagcaac gatgttaaag cgtccagcta tgcgggagca atttttaaag       480
     ggagcggctg tatcatggac aggaattcgt ttgctcaatt tgggagttgc gatattccaa       540
     agcatgtagc cgagtccatc actaaggttg ccaccaaaga gcacgatgtt gacataatgg       600
     taaaaagggg tgaagtgacc gttcgtgttg tgactctcac cgaaactatt tttataatat       660
     tatctagatt gttt                                                         674
//