ID AY682102; SV 1; linear; genomic RNA; STD; VRL; 3431 BP. XX AC AY682102; XX DT 01-DEC-2004 (Rel. 82, Created) DT 18-NOV-2008 (Rel. 97, Last updated, Version 7) XX DE Fragaria chiloensis latent virus segment RNA 1, complete sequence. XX KW . XX OS Fragaria chiloensis latent virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3431 RX DOI; 10.1016/j.jviromet.2004.11.006. RX PUBMED; 15664053. RA Tzanetakis I.E., Keller K.E., Martin R.R.; RT "The use of reverse transcriptase for efficient first- and second-strand RT cDNA synthesis from single- and double-stranded RNA templates"; RL J. Virol. Methods 124(1-2):73-77(2005). XX RN [2] RC Publication Status: Available-Online prior to print RP 1-3431 RX DOI; 10.1016/j.virusres.2005.02.010. RX PUBMED; 15878214. RA Tzanetakis I.E., Martin R.R.; RT "New features in the genus Ilarvirus revealed by the nucleotide sequence of RT Fragaria chiloensis latent virus"; RL Virus Res. 112(1-2):32-37(2005). XX RN [3] RP 1-3431 RA Tzanetakis I.E.; RT ; RL Submitted (08-JUL-2004) to the INSDC. RL Department of Botany and Plant Pathology, Oregon State University and RL USDA-ARS, 3420 Orchard Ave, Corvallis, OR 97330, USA XX DR MD5; 5db27702eda0fb0852c5fe9e33083ff5. XX FH Key Location/Qualifiers FH FT source 1..3431 FT /organism="Fragaria chiloensis latent virus" FT /segment="RNA 1" FT /host="Fragaria chiloensis" FT /mol_type="genomic RNA" FT /isolation_source="National Clonal Germplasm Repository FT clone CFRA 9087" FT /db_xref="taxon:255238" FT 5'UTR 1..25 FT CDS 26..3277 FT /codon_start=1 FT /product="replicase" FT /note="contains methyltransferase and helicase motifs" FT /db_xref="GOA:Q5QDM5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5QDM5" FT /protein_id="AAV68306.1" FT /translation="MDFQNLSSSAVPSPVSVQDLLSETLKRQCTDETTAIGKLFAEEAK FT RLVTQSFGSDAAKPLNVSFQLSAEQQSLLKRNFPGRVIQFSNSSSSSHSFAAAHRLLET FT DFVYSCFGNKNATILDLGGNHVSHLKMERHNVHCCCPLLDGRDCARHTERLISYSTFKA FT SHPQEIHDMNFCENAFQHCDEKADFAMAIHSTSDLPLDVLCKALLKKGVRKFICTIMID FT PDMLVKDRGFIEHFNVSWTIDRYADRIWFDFNDAPCLGYDHKYSTLMQYLTYNAVDLGD FT SAYRVERKQDFSGVMVIDITRCAGFVPGIPLNCGRSCAWFTKIRNKTIVNISDIRDEVN FT GITLIQRGVLIDTKVLIRVCEASFRQFKPNVEARVAVQNICTMLSSATNHCIINGVTMI FT AGTPLSVDDYVPVATTVYHRVKKIYESVGTVLNNMNTYRDLLAKHRAMTVDDLLNADFS FT TQAEAGLFSLLRILAFPIRFVAKLTGLLPPGTLTEVVGKTGSVERHTFVRKWGATFLNI FT ARHILMEYQVMTPYLADPELFVPLESVMRAHCDEFGPVLQIPEMLSVRGLKNSIDEKIA FT SDRAEIIAEKLEADKLRAKQEKAILTVAAWIDAHPDGKVPVGLGLSSEDGKFLYPKPTT FT EVVTEVGDDVVNPHADSIKEAIMYFETMSATSQSTLIELGNHCRWANYGFTTVWAGDEN FT RRIYQPSLNKWTGPMSVRNPTYRGEYERGMTVDGYVTLQWKDGSITEECRRSLFKYEIV FT IFDDSCIFAAAERMIPSLRKALTIFSDFSVTIMDGVAGCGKSTSIVRNASLDPNCPDLV FT LSSNRSSAEDLSIKIPGTRIVKSRYVRTCDSFLMTNSPPTAKKMFFDECFMQHAGCIYA FT AATLARCSEVYAYGDKEQIPFISRCDSIRFTHEKLEGKVVQQLVTYRCPVDATAALSKF FT LYKKKKNIVTRRNVDRSISIVPINAVSQIEIDDKAVYITHTQAEKKALQSADGFSRMKV FT FSTHEAEGGTFDKVYFVRLSRTSTHLTAGSHPTMGACHGLVALSRHRTVFRYYTTATSD FT SNDILYKACRYASASSDSELEFARYVPPIGEVIKL" FT 3'UTR 3278..3431 XX SQ Sequence 3431 BP; 902 A; 626 C; 821 G; 1082 T; 0 other; gaaagttttc tttccatttg gttatatgga ttttcaaaat ctttcgtctt ctgctgtccc 60 ttctcctgtc tctgtacaag atttattgtc agagacattg aagagacaat gcaccgatga 120 gaccactgct atcggtaagc tttttgccga agaggcaaaa agattggtta cccagagttt 180 tggtagtgat gctgccaaac ctttgaatgt ttcgtttcaa ctctctgctg agcagcagag 240 tttgttaaaa cgaaattttc ctggacgtgt tattcagttt tccaatagtt catcgtcgtc 300 gcattcattt gctgcggctc ataggctgtt ggaaactgac tttgtttact cttgttttgg 360 taacaagaat gccaccattt tggacttagg tggtaatcat gtgtcccatc ttaagatgga 420 gaggcacaat gttcactgtt gctgtccact tcttgacggc agggattgtg ccagacatac 480 tgaacgtttg atttcatact cgacgttcaa agcttctcat cctcaagaaa tccatgatat 540 gaatttttgt gaaaatgctt ttcagcattg tgatgagaag gctgattttg caatggctat 600 acattcgacg tctgatttgc cgttagatgt tttatgtaaa gcgttgctga aaaagggagt 660 aagaaagttc atctgtacaa taatgataga ccccgatatg ttggttaagg atcggggttt 720 tattgaacat tttaatgtta gttggactat tgacaggtat gccgatagaa tctggtttga 780 ttttaacgat gcaccctgtt tggggtatga tcataagtat tcgacactta tgcaatactt 840 gacctataat gcagttgact tgggtgattc tgcttataga gtcgaaagga aacaagattt 900 ttccggtgtt atggtgattg acataacccg atgtgctggt ttcgtccccg gtataccact 960 taattgtggt cgttcctgtg cttggtttac caagatcagg aacaagacca ttgtcaatat 1020 ttctgacatt agagatgaag ttaacggaat tacacttatc caacgaggtg tcctgattga 1080 tactaaggtg ttgatcagag tctgtgaagc ttctttccga caatttaagc ccaatgtcga 1140 agcccgggtt gccgtgcaaa acatttgcac gatgttgtcg tctgccacca atcattgtat 1200 aattaatggt gtgacgatga ttgccggtac tcctttgagt gtcgatgatt acgttccagt 1260 tgccactact gtttaccaca gagtgaagaa gatttatgaa tctgttggaa cagttctgaa 1320 caatatgaat acctaccgtg atcttctagc gaaacatagg gctatgacgg tagatgattt 1380 gctcaatgcg gatttttcca cgcaagccga agctgggttg ttttctttac tcagaatttt 1440 ggcttttccc attcgattcg ttgcaaagtt aactgggtta cttccacctg gaactttgac 1500 cgaagttgtg gggaaaactg gatcggttga gaggcacacg tttgtgagga aatggggtgc 1560 cacgttttta aatattgcta gacatatttt gatggagtat caagttatga ctccttactt 1620 ggctgatcca gagttgtttg tgccacttga gtccgttatg cgagctcatt gtgatgaatt 1680 cggtcccgtc ttacagattc cagaaatgtt gtctgtgagg ggattgaaaa attccatcga 1740 tgagaagatt gccagtgatc gagctgagat cattgcggag aagctcgagg ccgataagct 1800 tagagctaag caggagaaag cgattttgac tgttgccgct tggattgatg ctcatcctga 1860 tggtaaggtt ccggtcggat tgggattatc gtctgaggat ggtaaattct tgtatccaaa 1920 acccacgacc gaggtggtta ctgaagtcgg tgatgatgtt gtaaaccctc atgcggactc 1980 gattaaagaa gcaataatgt atttcgagac catgtcggct actagtcaat ctactttgat 2040 agaacttggt aatcattgta gatgggctaa ctatgggttt accaccgtgt gggctggtga 2100 tgaaaacaga cgtatatacc aacctagttt aaataaatgg actggtccga tgtcagtcag 2160 aaatcctaca tatcgcggtg aatatgagcg cggtatgact gttgatgggt acgttacttt 2220 acagtggaag gatggttcca tcactgaaga atgccgaaga tcacttttca aatatgaaat 2280 agtgatcttc gatgattcgt gtatttttgc agcggccgaa cgaatgatac caagtcttcg 2340 taaggcactg accattttta gtgactttag tgtcactatt atggatggtg ttgccggttg 2400 cggaaaatcc acaagtattg ttcgaaacgc tagtctggac ccaaattgcc cagatctcgt 2460 cttgagcagt aataggtctt cagctgaaga tcttagtatc aagataccag gtactagaat 2520 agtcaagtct aggtatgtta ggacttgtga ctcattcctg atgacaaatt caccccctac 2580 cgcgaagaaa atgttttttg atgaatgttt tatgcagcat gctggttgta tttatgcagc 2640 tgctacttta gcgaggtgtt ctgaggtgta tgcctatggt gacaaggagc aaataccctt 2700 catttcaagg tgtgattcta taagattcac acatgagaaa ttggagggta aggtggtgca 2760 gcaacttgtt acatatagat gtcccgtcga cgccactgcg gcgttgtcga agtttcttta 2820 taagaagaaa aagaacattg tgactaggcg caatgttgat aggtcaattt ctattgttcc 2880 tataaatgct gtcagtcaaa ttgaaattga tgacaaagcc gtttacataa ctcatacaca 2940 agccgagaag aaggctttgc agagtgctga cggattttcg cgtatgaaag tattttctac 3000 gcatgaagct gagggaggta ccttcgacaa agtctatttt gttagactgt cgaggacgtc 3060 aactcatttg acagctggtt cccatcctac aatgggagca tgtcatgggt tggttgcact 3120 gagtaggcat aggacggtat ttagatacta tactacggct actagtgatt cgaacgacat 3180 cctttataag gcttgtcgtt atgcatctgc gagttccgat tctgagttgg aatttgctag 3240 atatgttcca ccaataggtg aagttataaa gttgtaggta aaatctttat gagttgtacc 3300 ggactaggtc cgaagttgta caagtagtct cctctcatcg ccatctgggt ggggttttag 3360 gagtctatgc caaactcttt gagtttgatg ccaattcagt tttcgtctga attgatgccc 3420 gaaaggatgg c 3431 //