ID AY666122; SV 2; circular; genomic DNA; STD; VRL; 3748 BP. XX AC AY666122; AY034068; XX DT 27-AUG-2004 (Rel. 81, Created) DT 31-OCT-2009 (Rel. 102, Last updated, Version 6) XX DE Torque teno virus 3 strain HEL32, complete genome. XX KW . XX OS Torque teno virus 3 OC Viruses; Anelloviridae; Alphatorquevirus. XX RN [1] RP 1-3748 RX PUBMED; 11961251. RA Kakkola L., Hedman K., Vanrobaeys H., Hedman L., Soderlund-Venermo M.; RT "Cloning and sequencing of TT virus genotype 6 and expression of antigenic RT open reading frame 2 proteins"; RL J. Gen. Virol. 83(Pt 5):979-990(2002). XX RN [2] RP 1-3748 RX DOI; 10.1128/JVI.79.10.6505-6510.2005. RX PUBMED; 15858033. RA Qiu J., Kakkola L., Cheng F., Ye C., Soderlund-Venermo M., Hedman K., RA Pintel D.J.; RT "Human circovirus TT virus genotype 6 expresses six proteins following RT transfection of a full-length clone"; RL J. Virol. 79(10):6505-6510(2005). XX RN [3] RP 1-3748 RX DOI; 10.1111/j.1742-4658.2007.06020.x. RX PUBMED; 17714512. RA Kakkola L., Tommiska J., Boele L.C., Miettinen S., Blom T., Kekarainen T., RA Qiu J., Pintel D., Hoeben R.C., Hedman K., Soderlund-Venermo M.; RT "Construction and biological activity of a full-length molecular clone of RT human Torque teno virus (TTV) genotype 6"; RL FEBS J 274(18):4719-4730(2007). XX RN [4] RP 1-3748 RX DOI; 10.1016/j.virol.2008.09.012. RX PUBMED; 18947848. RA Kakkola L., Bonden H., Hedman L., Kivi N., Moisala S., Julin J., RA Yla-Liedenpohja J., Miettinen S., Kantola K., Hedman K., RA Soderlund-Venermo M.; RT "Expression of all six human Torque teno virus (TTV) proteins in bacteria RT and in insect cells, and analysis of their IgG responses"; RL Virology 382(2):182-189(2008). XX RN [5] RP 1-3748 RA Kakkola L., Hedman K., Vanrobaeys H., Hedman L., Soderlund-Venermo M.; RT ; RL Submitted (08-MAY-2001) to the INSDC. RL Department of Virology, Haartman Institute, University of Helsinki, RL Haartmaninkatu 3, Helsinki P.O.B. 21, 00014, Finland XX RN [6] RP 1-3748 RA Kakkola L., Tommiska J., Hedman K., Soderlund-Venermo M.; RT ; RL Submitted (23-JUN-2004) to the INSDC. RL Department of Virology, Haartman Institute, University of Helsinki, P.O.B. RL 21 (Haartmaninkatu 3), Helsinki 00014, Finland XX RN [7] RC Sequence update by submitter RP 1-3748 RA Kakkola L., Tommiska J., Hedman K., Soderlund-Venermo M.; RT ; RL Submitted (13-SEP-2007) to the INSDC. RL Department of Virology, Haartman Institute, University of Helsinki, P.O.B. RL 21 (Haartmaninkatu 3), Helsinki 00014, Finland XX DR MD5; c97df1069c5bf9da910d8a79369e0612. DR EuropePMC; PMC1091685; 15858033. DR EuropePMC; PMC3020864; 20844210. DR EuropePMC; PMC3573928; 23270330. XX CC On Sep 13, 2007 this sequence version replaced gi:51477325. XX FH Key Location/Qualifiers FH FT source 1..3748 FT /organism="Torque teno virus 3" FT /strain="HEL32" FT /mol_type="genomic DNA" FT /country="Finland" FT /note="genotype: 6" FT /db_xref="taxon:687342" FT misc_difference 1..5 FT /replace="tttgcta" FT /note="compared to previous sequence in AY034068.1" FT misc_difference 69 FT /replace="g" FT /note="compared to previous sequence in AY034068.1" FT regulatory 82..87 FT /regulatory_class="TATA_box" FT CDS join(354..703,2505..2982) FT /codon_start=1 FT /product="ORF2/3" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/Swiss-Prot:A7XCC9" FT /protein_id="ABV25031.1" FT /translation="MWQPPTQNGTQLERHWFESVWRSHAAFCSCGDCIGHLQHLATNLG FT RPPAPQPPRDQHPPHIRGLPALPAPPSNRNSWPGTGGDAAGGEAGGSRGAGDGGDGELA FT DEDLLDAIALAADPQTQTPQERHPGQRKNARKRLRFSSPTQKTPALDPLQSRNKRRRGG FT DTGGPGTRTTSPAAPAAATPQSPARVHCPRSPQNQEGAQPPPPTIFPCINKVFMFNPPG FT PKRITGYEAWRDEYETCKAWNRPPRSFYTDIPTYTWMPKAQDQFRVSFKLGFH" FT CDS join(354..703,2315..2810) FT /codon_start=1 FT /product="ORF2/2" FT /db_xref="InterPro:IPR004118" FT /db_xref="InterPro:IPR008474" FT /db_xref="UniProtKB/TrEMBL:A7XCD6" FT /protein_id="ABV25033.1" FT /translation="MWQPPTQNGTQLERHWFESVWRSHAAFCSCGDCIGHLQHLATNLG FT RPPAPQPPRDQHPPHIRGLPALPAPPSNRNSWPGTGGDAAGGEAGGSRGAGDGGDGELA FT DEDLLDAIALAAESSDTPATDRPPQAIECLAQYKQLTRNTSHSNSCGTRGTSEEASLAR FT QVLRECNKNQMLLHFLQSTDPNAPRETPRSKKKRPKKTQIQQSNSEDSSPGSTPVKKQK FT TKRRRYRRARYKNNFSSSSSSSDSSESSSSPLPKKSSKSGGGTASTPYYLPMHKQGLYV FT " FT CDS 354..707 FT /codon_start=1 FT /product="ORF2" FT /db_xref="InterPro:IPR004118" FT /db_xref="UniProtKB/Swiss-Prot:A7XCD9" FT /protein_id="ABV25034.1" FT /translation="MWQPPTQNGTQLERHWFESVWRSHAAFCSCGDCIGHLQHLATNLG FT RPPAPQPPRDQHPPHIRGLPALPAPPSNRNSWPGTGGDAAGGEAGGSRGAGDGGDGELA FT DEDLLDAIALAAE" FT CDS join(581..703,2505..2810) FT /codon_start=1 FT /product="ORF1/2" FT /db_xref="UniProtKB/Swiss-Prot:A7XCE1" FT /protein_id="ABV25030.1" FT /translation="MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRSTDP FT NAPRETPRSKKKRPKKTQIQQSNSEDSSPGSTPVKKQKTKRRRYRRARYKNNFSSSSSS FT SDSSESSSSPLPKKSSKSGGGTASTPYYLPMHKQGLYV" FT CDS 581..2791 FT /codon_start=1 FT /product="ORF1" FT /db_xref="GOA:A7XCE4" FT /db_xref="InterPro:IPR004219" FT /db_xref="UniProtKB/Swiss-Prot:A7XCE4" FT /protein_id="ABV25035.1" FT /translation="MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRVRRR FT RGRWRRRYRRWRRRGGRRRHRKKLIIKQWQPNFIRHCYIIGYMPLIICGENTFSHNYAT FT HSDDMLSTGPYGGGMTTTKFTLRILFDEYQRHLNFWTVSNQDLDLARYLGTKIIFFRHP FT TVDFVVQIHTQPPFQDTEITAPSIHPGMLILSKKHILIPSLKTRPSKKHYVKVRVGAPR FT LFQDKWYPQSELCDVTLLVIYATACDLQYPFGSPQTDNVCVNFQILGQPYYQHLKTALG FT LTEKTTYENHYKNNLYKKIKFYNTTETIAQLKPLVDATTNQTWSHYVNPNKLTTTPTSE FT ITHNNTWYRGNAYNDKITDLPEIVKKSYYKATELAIPEAVKPTTDLFEYHAGIYSSIFL FT SPGRAYFETPGAYQDIIYNPFTDKGIGNIVWIDWLSKSDAVYSEKQSKCGIFDLPLWAA FT FFGYAEFCSKSTGDTAIAYNSRVCVRCPYTEPQLLNHNNPSQGYVFYSYNFGKGKMPGG FT SSQVPIRMRWKWYVCMFHQLEVMEAICQSGPFAYHSDEKKAVLGIKYKFDWKWGGNPIS FT QQIVRHPCNGQTSSGNRVPRSVQAVDPKYVSLQLVWHSWDFRRGLFGQAGIKRMQQESD FT ALTLSPVHRPKRPKRDTQVKEKTPEKDSDSAVQLRRLQPWIHSSQETKDEEEEIPEGPV FT QEQLLQQLQQQRLLRVQLESIAQEVLKIRRGHSLHPLLSSHA" FT CDS join(581..703,2315..2791) FT /codon_start=1 FT /product="ORF1/1" FT /db_xref="UniProtKB/Swiss-Prot:A7XCE8" FT /protein_id="ABV25032.1" FT /translation="MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRIVRH FT PCNGQTSSGNRVPRSVQAVDPKYVSLQLVWHSWDFRRGLFGQAGIKRMQQESDALTLSP FT VHRPKRPKRDTQVKEKTPEKDSDSAVQLRRLQPWIHSSQETKDEEEEIPEGPVQEQLLQ FT QLQQQRLLRVQLESIAQEVLKIRRGHSLHPLLSSHA" FT regulatory 2978..2983 FT /regulatory_class="polyA_signal_sequence" FT misc_difference 3362 FT /replace="" FT /note="compared to previous sequence in AY034068.1" FT misc_difference 3376 FT /replace="g" FT /note="compared to previous sequence in AY034068.1" XX SQ Sequence 3748 BP; 1077 A; 1068 C; 858 G; 745 T; 0 other; aagatcgtca ctaaccacgt gactctccac agcgaaccac tggtgtacgt gattcacttc 60 ctgggcgtaa cttatgtact catataagta actgcacttc cgaatggctg agttttccac 120 gcccgtccgc agcggcagca cctcgaaggg tgatccccgc gtcccgaggg cgggtgccga 180 aggtgagttt acacaccgca gtcaaggggc aattcgggct cgggactggc cgggctatgg 240 gcaaggctct tagggtattc actcttaaaa tgcacttttc tagaatctct cgctcgaaaa 300 ggaaagtgtt tctgccggca ctgccagctc caccgccgcc taggcaactt ctaatgtggc 360 agccacctac ccagaatgga acccaactcg aacggcactg gttcgagtcc gtttggcgtt 420 cgcatgctgc cttttgtagc tgtggcgact gtattggcca tcttcagcat ctggctacta 480 acctgggtcg accacctgct ccacaaccgc cgcgagacca acacccaccg cacataagag 540 ggctcccggc actcccggca cctcccagta acagaaactc atggcctggt actggtggag 600 acgccgccgg aggagaggct ggtggaagcc gaggcgcagg agatggagga gacggagagc 660 tcgcagacga ggacctgcta gacgccatcg cgctcgccgc agagtaagga ggcgaagggg 720 gaggtggagg agacgataca gacgctggcg cagacgcggg gggcgacgca gacacagaaa 780 aaaactaata attaaacagt ggcaacctaa ctttattaga cactgctaca taataggata 840 catgccactg ataatatgtg gagagaacac tttctcccac aactatgcca cccactcgga 900 cgatatgctc tctacagggc cctacggagg gggcatgact accacaaaat tcaccctaag 960 aatactcttt gacgagtacc aaagacactt aaatttctgg accgttagca accaagacct 1020 agacctagcc aggtacctgg gaacaaaaat catcttcttt agacacccca cggtagactt 1080 tgtggtacaa atacacacac agcctccctt ccaagacaca gagataacag cacccagcat 1140 acacccagga atgctcatac tctctaagaa acacatacta atacccagcc taaaaaccag 1200 gccctctaaa aaacactatg taaaagttag agtaggggcc ccaagactct ttcaggacaa 1260 gtggtacccc cagagcgagc tctgtgacgt cacattactc gttatctatg caaccgcatg 1320 tgacttgcaa tatccgttcg gctcaccaca aactgacaac gtatgtgtca acttccagat 1380 attggggcaa ccctattacc aacacctcaa gacggcctta ggcttaactg aaaaaaccac 1440 atacgaaaac cactataaaa ataacttata taagaaaatt aaattttata acactacaga 1500 aacaatagca caactaaaac ctctagtaga tgctactacc aatcaaacct ggtcacatta 1560 cgtaaaccct aataaactta caacaacacc tacatcagaa ataacccata ataacacatg 1620 gtacagaggc aatgcataca atgacaaaat tacagaccta cctgaaatag taaaaaaaag 1680 ctattataaa gccacagaac ttgctatacc agaagcagta aaacccacca cagacttatt 1740 tgagtaccac gcaggcatat acagctccat attcctgtcc ccaggaagag catactttga 1800 gacccctgga gcataccaag acataattta caatcccttt acagacaaag gaataggaaa 1860 catagtgtgg atagactggc tcagtaaatc agacgcagta tactcagaaa agcaaagcaa 1920 atgtggtata tttgacctac ctctatgggc agccttcttt ggatatgcag agttctgctc 1980 caaaagcaca ggagacacag ccatagcata caacagcaga gtatgtgtta gatgcccata 2040 cacagagcca cagctgttaa accacaacaa cccctcacag ggatatgtgt tttactctta 2100 caactttggc aaaggcaaga tgcccggagg cagttcccag gtacctataa gaatgaggtg 2160 gaaatggtac gtgtgcatgt tccaccagct agaggtcatg gaagctatat gccaaagcgg 2220 accgtttgca tatcacagcg acgaaaaaaa agcagtacta ggcataaaat ataagttcga 2280 ctggaaatgg ggaggaaatc ctatctccca acagatcgtc cgacacccct gcaacggaca 2340 gacctcctca ggcaatagag tgcctcgctc agtacaagca gttgacccga aatacgtctc 2400 actccaactc gtgtggcact cgtgggactt cagaagaggc ctctttggcc aggcaggtat 2460 taagagaatg caacaagaat cagatgctct tacactttct ccagtccaca gacccaaacg 2520 ccccaagaga gacacccagg tcaaagaaaa aacgcccgaa aaagactcag attcagcagt 2580 ccaactcaga agactccagc cctggatcca ctccagtcaa gaaacaaaag acgaagagga 2640 ggagataccg gagggcccgg tacaagaaca acttctccag cagctccagc agcagcgact 2700 cctcagagtc cagctcgagt ccattgccca agaagtcctc aaaatcagga gggggcacag 2760 cctccacccc ctactatctt cccatgcata aacaaggtct ttatgtttaa ccctccaggt 2820 ccaaaacgca tcactgggta cgaggcctgg agggatgaat atgaaacatg caaggcctgg 2880 aacaggcccc ctagatcctt ttacacagat attcccacat acacctggat gcccaaagcc 2940 caagaccaat ttcgtgtaag cttcaaactt ggctttcatt aaaatttcaa ggccgtgcaa 3000 cattcacttg tcggtgtcta cctctaaagg tcactaagca ctccgagcgc aagcgaggag 3060 tgcgaccctc cccccctggg gcaactccct cgaagtccgg cgctacgcgc ttcgcgctgc 3120 gccggacatc tcggaccccc cctccacccg aaacgcttgc gcgtttcgga ccttcggcgt 3180 cgggggggtc gggggcttta ctaaacagac tccgagatgc cattggacac tgagggggca 3240 tacagcaacg aaagtgagtg gggccagact tcgccataag gcctttatct tcttgccatt 3300 tgtcagtata gggggtcgcc ataggcttcg gcctccattt taggccttcc ggactacaaa 3360 aatggccgtt ccagtaacgt cacggccgcc attttaagta ggtgccgtcc agcactgctg 3420 ttccgggtta aagggcatcc tcggcggaac ctatacaaaa tggccgccaa tttcttccgg 3480 gtcaaaggtc acgcctacgt catcgatgac gtggggaggc gtactatgaa acgcggaagt 3540 aggccccgct acgtcatcat cacgtgggtg ctgcgtcacg gccgccattt tgttttacaa 3600 aatggccgac ttccttcctg ttttttaaaa attaaccgtt agcggcggcg cgcgcgcttc 3660 gcgcgcgcgc cggggggctc cgcccccccc ccgcgcatgc gcggggcccc ccccccgcgg 3720 ggggctccgc cccccggccc cccccccg 3748 //