Dbfetch

Dbfetch

ID   AY651850; SV 1; circular; genomic DNA; STD; VRL; 1767 BP.
XX
AC   AY651850;
XX
DT   19-JUL-2004 (Rel. 80, Created)
DT   19-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Porcine circovirus 2 strain JX0301, complete genome.
XX
KW   .
XX
OS   Porcine circovirus 2
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1767
RA   Zhou J.Y., Chen Q.X., Ye J.X., Chen T.F., Shang S.B., Li Z.K., Shen H.G.;
RT   "Complete genome of JX0301 strain of PCV-2 isolated from pigs with wasting
RT   syndromes";
RL   Unpublished.
XX
RN   [2]
RP   1-1767
RA   Zhou J.Y., Chen Q.X., Ye J.X., Chen T.F., Shang S.B., Li Z.K., Shen H.G.;
RT   ;
RL   Submitted (12-JUN-2004) to the INSDC.
RL   Institute of Preventive Veterinary Medicine, Zhejiang University, 268
RL   Kaixuan Road, Hangzhou, Zhejiang 310029, China
XX
DR   MD5; 662aa00db2fceeb5163bdcb9b924ff1a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1767
FT                   /organism="Porcine circovirus 2"
FT                   /host="pig"
FT                   /strain="JX0301"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Zhejiang"
FT                   /note="genotype: PCV-2"
FT                   /db_xref="taxon:85708"
FT   gene            51..995
FT                   /gene="rep"
FT   CDS             51..995
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="replicase"
FT                   /db_xref="GOA:Q6DNI6"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q6DNI6"
FT                   /protein_id="AAT72901.1"
FT                   /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIV
FT                   GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAEGTDQQNKEYCSKEGNLL
FT                   MECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR
FT                   DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP
FT                   WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL
FT                   VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY"
FT   gene            complement(1033..1734)
FT                   /gene="cap"
FT   CDS             complement(1033..1734)
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="cap protein"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q6DNI5"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/TrEMBL:Q6DNI5"
FT                   /protein_id="AAT72902.1"
FT                   /translation="MTYPRRRYRRRRHRPRSHLGQILRRRPWLLHPRHRYRWRRKNGIF
FT                   NTRLSRTFGYTIKRTTVKTPSWAVDMMRFNINDFLPPGGGSNPRSVPFEYYRIRKVKVE
FT                   FWPCSPITQGDRGVGSSAVILDDNFVTKATALTYDPYVNYSSRHTITQPFSYHSRYFTP
FT                   KPVLDSTIDYFRPNNKRNQLWLRLQTAGNVDHVGLGTAFENSIYDQEYNIRVTMYVQFR
FT                   EFNLKDPPLNP"
XX
SQ   Sequence 1767 BP; 447 A; 359 C; 503 G; 458 T; 0 other;
     accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac atgcccagca        60
     agaagaatgg aagaagcgga ccccaacccc ataaaaggtg ggtgttcact ctgaataatc       120
     cttccgaaga cgagcgcaag aaaatacggg atcttccaat atccctattt gattatttta       180
     ttgttggcga ggagggtaat gaggaaggac gaacacctca cctccagggg ttcgctaatt       240
     ttgtgaagaa gcagactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg       300
     agaaagcgga aggaacagat cagcagaata aagaatactg cagtaaagaa ggcaacttac       360
     tgatggagtg tggagctccg agatctcagg gacaacggag tgacctgtct actgctgtga       420
     gtaccttgtt ggagagcggg agtctggtga ccgttgcaga gcagcaccct gtaacgtttg       480
     tcagaaattt ccgcgggctg gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg       540
     attggaagac taatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg       600
     ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac aagtggtggg       660
     atggttacca tggtgaagaa gtggttgtta ttgatgactt ttatggctgg ctgccctggg       720
     atgatctact gagactgtgt gatcgatatc cattgactgt agagactaaa ggtggaactg       780
     tacctttttt ggcccgcagt attctgatta ccagcaatca gaccccgttg gaatggtact       840
     cctcaactgc tgtcccagct gtagaagctc tttatcggag gattacttcc ttggtatttt       900
     ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc ctttcccccc       960
     catgccctga atttccatat gaaataaatt actgagtctt ttttatcact tcgtaatggt      1020
     ttttattatt cattaagggt taagtggggg gtctttaaga ttaaattctc tgaattgtac      1080
     atacatggtt acacggatat tgtattcctg gtcgtatata ctgttttcga acgcagtgcc      1140
     gaggcctacg tggtctacat ttccagcagt ttgtagtctc agccacagct gatttctttt      1200
     gttgtttggt cggaagtaat caatagtgga atctaggaca ggtttggggg taaagtagcg      1260
     ggagtggtag gagaagggct gggttatggt atggcgggag gagtagttta cataggggtc      1320
     ataggtgagg gctgtggcct ttgttacaaa gttatcatct agaataacag cactggagcc      1380
     cactcccctg tcaccctggg tgatcgggga gcagggccag aattcaacct taacctttct      1440
     tattctgtag tattcaaagg gcacagagcg ggggtttgag ccccctcctg ggggaagaaa      1500
     gtcattaata ttgaatctca tcatgtccac cgcccaggag ggcgttttga ctgtggttcg      1560
     cttgatagta tatccgaagg tgcgggagag gcgggtgttg aagatgccat ttttccttct      1620
     ccagcggtaa cggtggcggg ggtggaggag ccaggggcgg cggcggagga tctggccaag      1680
     atggctgcgg gggcggtgtc ttcttctccg gtaacgcctc cttggatacg tcatatctga      1740
     aaacgaaaga agtgcgctgt aagtatt                                          1767
//