ID AY646856; SV 2; linear; genomic RNA; STD; VRL; 7500 BP. XX AC AY646856; XX DT 08-JAN-2005 (Rel. 82, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 15) XX DE Sapovirus NongKhai-24/Thailand, complete genome. XX KW . XX OS Nongkhai virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Caliciviridae; Sapovirus; Sapovirus sapporoense; OC Sapporo virus. XX RN [1] RP 1-7500 RX PUBMED; 15623956. RA Guntapong R., Hansman G.S., Oka T., Ogawa S., Kageyama T., Pongsuwanna Y., RA Katayama K.; RT "Norovirus and sapovirus infections in Thailand"; RL Jpn J Infect Dis 57(6):276-278(2004). XX RN [2] RP 1-7500 RX DOI; 10.1007/s00705-004-0406-8. RX PUBMED; 15449145. RA Hansman G.S., Natori K., Oka T., Ogawa S., Tanaka K., Nagata N., RA Ushijima H., Takeda N., Katayama K.; RT "Cross-reactivity among sapovirus recombinant capsid proteins"; RL Arch. Virol. 150(1):21-36(2005). XX RN [3] RP 1-7500 RX PUBMED; 16485479. RA Hansman G.S., Takeda N., Oka T., Oseto M., Hedlund K.O., Katayama K.; RT "Intergenogroup recombination in sapoviruses"; RL Emerging Infect. Dis. 11(12):1916-1920(2005). XX RN [4] RP 1-7500 RA Hansman G.S.; RT ; RL Submitted (07-JUN-2004) to the INSDC. RL Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen, RL Musashimurayama, Tokyo 208-0011, Japan XX RN [5] RC Sequence update by submitter RP 1-7500 RA Hansman G.S.; RT ; RL Submitted (12-JAN-2006) to the INSDC. RL Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen, RL Musashimurayama, Tokyo 208-0011, Japan XX DR MD5; 9aaf9db40c31e955042e61737d111bcc. XX CC On Jan 17, 2006 this sequence version replaced AY646856.1. XX FH Key Location/Qualifiers FH FT source 1..7500 FT /organism="Nongkhai virus" FT /strain="NongKhai-24/Thailand" FT /mol_type="genomic RNA" FT /db_xref="taxon:2848004" FT CDS 15..6920 FT /codon_start=1 FT /product="ORF1" FT /protein_id="AAV69575.2" FT /translation="MASKPLQVESCDFTFEVHLLRQCYLRVAPREEFLFDNTLETIAQY FT LLKHMPRSHKFSMGQACEFEAEGLLSRLFGTAGSPSLDSQSAYKELFGFDTSEQMPLSL FT EELAKLQGEIASSLQTNNNQFVTKHGKANVQALLEQLNQLVPRDVSEAERRRREFFERQ FT TAAAFAELPNDDSFTEHDWKSYWYAMWRRVVGGCRSYYHSLPRWSSFKTRLARATEPLR FT QVLAVAAQTFDQCIQTDPRILAMNCVTALKPTVLTMIYQQHHNTPSGWLATLTALWEVF FT QPSLPNLGTLGASVATTLGLVVTALSRFFQKLCSYVSETFFPEAPTTPGWVAIAAGVLL FT LLLKLSCIPKVFTHWHTLLKLASGITTVVGATRAVDWIMTKVRDARHSSMCKQFLSRVS FT ALLELHYSKTVTGVAENTELLKCFDQLIDEGEELVSEIGGGSLAAIIRSGVDTLQRVST FT EIKATIQLDNPRPVPVCVVFSGPPGIGKTSLAYHMAKGIGLTSNFSLANDHHDGYTGNP FT VAIWDEFDTDRDGKFVEQMIALVNTQPCVLNCDRPENKGKLFTSKFIFCTTNYTTSVLP FT DNPRAGAFYRRIITVDVRSPEIEDWMSAHPGRSPPKTLFKNDCSHLKLMVRPYMGYNPD FT GDTLSGKRVKPTPISIAGLHDLIDKKFEEQSGEVRGLWITVPRRSVQPALAAVKKFCVA FT HQALCHVTSTPTPEVLQCTTFSCVVVSDAHPPPGVPLIHIKNAHLESDATGQSLSSISE FT SLLGMFITEQRVSSNVQRDIMYKVWSPFTLMQTEPLNTQNLPPIRRIIYADTAMDFIGG FT LRHHLGFSSIPGLWRALKHLPDTSSMIEWITDHLSQVQFPLNPESTLFRTGNGDVIFYT FT YGSFYALGTCARVPAVTGDTLNPLPNTPLKMTWFETLKALCSSALRLFSAVAPFAIAVA FT NVTYLTTRGAREEQAKGKTKHGRGARHGRGRSTALNDDEYNEWMDLRRDWREEMTADQF FT LQLRDEAYEGIINDRTQRYNTWLNIRNMRLGAGAYQHATIIGKGGVRNEIIRTQVMKAP FT RKGKWSHIDSSGPMNYFDEAPTPLVEFESDGSHIGWGVHLGNGRIVTVTHVATSSNTVN FT GVPFKIKDTDGETCQVYAALGDLPHYQIGDGPPVYYTTRFHPVLVIGEGQYDTPTTTVN FT GFHVKITNSYPTKKGDCGLPYFNSLRQVVALHAAGSTDGTTKLAQRVGKTNDTSESFVW FT KGLPVLRGSDVGGLPTGTRYHRSPAWPETMPHETHSPAPFGSGDKRYDFSQVEMLVNNL FT RPYLDEVPGIPPVLLNRAIVHTRNYLQSIIGSEQSPSLSYGVAAGMLERGTSCGPHVPG FT LKSDYWDEETCQYTGALREHLEQVWNKALLGTPPSHDYKLALKDELRPNEKNAQGKRRL FT LWGADAGLTLVCCAALKPAAVRLQSVVPMTPVAVGINMDSAHIEVMNESLKGRVLYALD FT YSKWDSTQSAAVTAASLEILSSFMEPSPVVSSAIEALKAPARGMVNDAIFVARSGLPSG FT MPFTSVINSINHMLYISSAILQAYESMGLPYNDNVFNIETVHTYGDDCLYGFTPATASL FT ASMIIDNLRSYGLKPTAADKGDVIAPVQVPVFLKRTFATTPHGLRALLDTSSILRQFHW FT VKAQRTCDIQSPPAIDIKSRAAQLEVALAYASQHGHEFFEKAREIAEKTSKVEGYLLVN FT TNFEQAVACYNSWYIGGTTPEMPTTNEGCGLLVFEMEGNGSRLGNSQTQSHMDTSNTVQ FT GAPPGTTGPADAPLVPVNPEQPNLPAQRLELAIATGATSSNVPDCVRSCFALLRTIPWN FT TRQPQGSLLTAVSLHPDINPYTKHLAQMFAGWGGAMDIRVTVSGSGLFAGKLVCGVLPP FT GVNPTLVNDPGVLPHALVDARITEPACFNVADVRAVDYHRTDGDEATATLGIWVLQPLI FT NPFSNEAVSTAWISIETKPGGDFDLCLLKPPGQAMENGGSPSHLLPRKLQRARGNRAGG FT YAVGMVIVGSAHQVNRHFTALGTTFGWSTAPYEPMRCAFGGVHVGATTPKKIGYYWEVG FT ADQRGPLFPNIVNHWPDFAVNSKYSWPDADYIPYNAVVGTLVSFADNGDVSENEVATAF FT AVSMNTPSTGGRGTLRENFDPSTMHLVRTNSTAQPADWPSGSNTGNGYFTPMWGHGSGN FT AINDKVTNMEGANYTFGGSGQNNIVLWIEKIFSDHPGPTILYSSQLDSTATIFQSGPVN FT IPENMMAVYNVTTNGADFQVGIRRDGYMVTSGTIGTRQELDPDTTFTYVGLFPLSASLV FT GPHGNTGRAQIAWS" FT CDS 5221..5688 FT /codon_start=1 FT /product="ORF3" FT /protein_id="ABC68389.1" FT /translation="MAPDLGTHKPNPIWILLTLCRVHRRARQALRTHPLYLLIQNSPIS FT LPNAWSWLLPQEQHPPMSLTVCGAALLSFARFLGTLDSPRDLCSQLCLYILTSTRTQNI FT LLKCLPGGGEQWTLESQSQARVYLQASLSVAYCLLELIPLLSTIRGCFHTH" FT CDS 6917..7417 FT /codon_start=1 FT /product="ORF2" FT /protein_id="ABC68390.1" FT /translation="MSWLVGALQTLGGLTDVASTISGVVYQQKHLEQLRRQNDLQQEWM FT ARNEQLQRDAMQLSRDLSTHGPALRAQAAIEAGFDVVSARQLAGAGERRINGYLEQPIR FT TIGEAMAVQSRGNLATLSGAMSTFQSGTQFGMKQPKNWKLQRAEQSRGPVVNLGPRPPS FT TDL" XX SQ Sequence 7500 BP; 1884 A; 1932 C; 1795 G; 1889 T; 0 other; gtgatcacct tgggatggct tccaagccac tccaagttga gtcttgcgac ttcacttttg 60 aagtccacct cctccgacag tgctacctca gggtagcacc tagagaggaa tttctgtttg 120 acaacacact ggaaacgatt gcccagtatt tgttgaagca catgcctaga tcccacaagt 180 ttagcatggg gcaagcttgt gaattcgagg ctgaggggtt gctgtcacgg ttattcggga 240 cagccggttc cccctcactt gactcacaaa gcgcctacaa agagctcttt ggttttgaca 300 ctagtgagca aatgcccctc tccctagaag aattggcaaa gttgcaagga gaaatcgcct 360 cctcgctcca aaccaataac aatcaatttg taaccaaaca tggcaaggca aatgtgcagg 420 cattactgga acagttgaac cagcttgtgc cacgggatgt ttctgaggcc gagcgacggc 480 gacgtgaatt ctttgaacgt caaaccgctg cagcttttgc agaactcccc aatgatgatt 540 cattcacaga gcatgactgg aagagttatt ggtatgctat gtggcgacgt gtggtgggag 600 gctgccgttc ttattaccac agcctccctc gctggagctc tttcaaaaca cgtcttgccc 660 gagcgacaga gccattacgt caggtcttgg ctgtagccgc tcagacattt gaccaatgca 720 tccaaactga cccccgcatc cttgcaatga actgtgtcac tgctcttaaa ccaacagtcc 780 tcaccatgat ctaccagcaa catcataaca ccccaagtgg gtggttggca actctgacag 840 ctctttggga ggttttccaa ccctccctcc ctaatctggg cacattgggt gcctccgtgg 900 caaccacttt gggactggtt gtaactgcat tgtctcggtt tttccagaag ctgtgttcct 960 atgtgtctga aacattcttt cctgaagctc caactacacc aggctgggtt gcaattgcgg 1020 ctggggtcct gctgcttttg ttaaaactgt cgtgcattcc aaaggtcttc acccattggc 1080 atacgctttt aaaacttgct agtggaatta ccacagttgt tggagccacc agggccgtgg 1140 attggatcat gaccaaagtc agggatgccc gccattcttc catgtgtaaa cagtttctca 1200 gtcgtgtctc tgcattgttg gaacttcact attctaaaac agtcactggt gttgcagaga 1260 acactgaatt gctcaaatgt tttgaccaat taattgatga gggtgaggaa ttggtgtccg 1320 aaattggagg aggttcactt gctgcaataa ttcgcagtgg agtagacaca ctacagcggg 1380 tttccaccga gatcaaggct acaatacagc ttgataaccc gcgacctgtc cctgtatgtg 1440 tggtgttctc cggacccccg ggcataggca aaacctctct cgcttatcac atggctaaag 1500 ggattgggct cacttcaaat ttttccttgg ctaacgatca tcatgatggc tacacaggca 1560 atcccgttgc gatctgggat gaatttgaca ccgaccgtga tggcaagttt gttgagcaaa 1620 tgattgcact tgtcaacaca cagccctgtg tgctcaattg tgatcgccct gagaacaaag 1680 ggaaactttt cacttccaag tttatcttct gcaccacaaa ttacaccaca agtgttctac 1740 ctgacaaccc tcgggctgga gccttttacc gtcgaatcat cacggtggat gtgcgctccc 1800 ctgaaattga agattggatg tcagcgcacc cagggcgatc gccacctaag acacttttta 1860 aaaatgactg ctcccaccta aaattaatgg ttcggcctta tatgggttac aatccagatg 1920 gtgacacttt atcaggtaag cgagtcaaac caacacccat ttcaattgca ggtttacatg 1980 atttgatcga caagaagttt gaagagcagt ctggtgaggt gaggggtttg tggatcaccg 2040 tgcctagacg gagtgttcag ccagcactgg ccgcagtgaa gaagttttgc gtggcgcatc 2100 aggcactttg ccatgtgacc tccacgccta caccagaggt gttgcagtgc actaccttct 2160 catgtgtcgt ggtttcagac gctcacccac ctccaggagt acctttgatc cacatcaaaa 2220 atgcccatct tgaaagtgac gcaacaggtc aatcattgtc cagcattagt gagagtttgc 2280 ttgggatgtt cattaccgag caacgtgtct cttcaaatgt acaacgggac atcatgtaca 2340 aggtgtggtc acccttcaca ctgatgcaaa ctgagccact taacacgcaa aacttgcccc 2400 ccatccgccg gataatttac gcggacactg ccatggattt cattggtggt ttgcgtcatc 2460 acttggggtt cagttcaatc cccggccttt ggagggctct gaaacatctc cctgacacat 2520 cctccatgat agagtggatt acggatcatt tgtcccaggt gcaattccca cttaacccgg 2580 aatccaccct ttttcgcact ggcaacggtg atgtgatttt ctacacctac gggtctttct 2640 atgcattggg gacctgtgct agagtacctg ctgtaactgg tgacacttta aatccactac 2700 caaacactcc acttaagatg acatggtttg agacactaaa agccttgtgt tcatcagccc 2760 ttcgcctctt ttcagctgtt gccccgtttg caattgctgt ggcaaacgtc acttatctca 2820 caacccgtgg ggcacgtgaa gagcaggcaa aaggcaaaac aaagcatggg cgtggagctc 2880 gtcatgggcg gggccgctct actgcattga atgatgatga gtacaatgag tggatggatt 2940 tacgtcgtga ttggcgggag gaaatgactg ccgaccagtt cttgcagctc cgggacgagg 3000 cttatgaggg aatcatcaat gacagaaccc aaaggtacaa cacctggctc aatattcgta 3060 acatgaggct tggggctggc gcttaccaac acgctaccat tattggcaaa ggtggggtta 3120 gaaatgaaat tattcgcaca caagtgatga aggcaccaag aaaaggcaag tggtcacaca 3180 ttgactcatc tggacctatg aattactttg atgaagcccc cacaccattg gtggaatttg 3240 aaagtgatgg cagtcacatt ggttggggtg tgcaccttgg taatgggcgc attgtaactg 3300 tcacccatgt tgcaacttca tccaacacag tcaatggagt gcccttcaaa attaaggata 3360 cagatggtga gacatgtcaa gtgtacgctg cacttggtga cttaccacac tatcaaattg 3420 gtgatggccc tcctgtttat tacacaacca gattccaccc agtcttggta attggagagg 3480 gacaatatga cacacccacc acaaccgtca atggctttca tgtaaagatc accaattcct 3540 acccaacaaa gaagggtgat tgtggtctgc cctacttcaa ctctctgcgc caagtggttg 3600 cattgcacgc tgctgggagc actgatggca ccactaaact cgcacaacga gttggcaaga 3660 ccaatgacac ttctgaaagc tttgtttgga agggactgcc tgtgttgcgt ggcagtgatg 3720 tgggtgggtt gccaactggc acccgttacc acagatctcc tgcatggcca gaaacaatgc 3780 cccacgaaac acattcacct gccccctttg gatcaggcga caagaggtat gatttctccc 3840 aagttgaaat gcttgttaac aaccttcgcc cataccttga tgaagtcccg ggcataccac 3900 cagttctatt gaacagagcc attgtccaca cccgtaacta tttgcaatcc atcattggta 3960 gtgaacagag tcccagtctg tcatatggag tggcagcagg catgttggaa cgtggcactt 4020 cctgtggccc acacgttcca ggtttgaaat ctgactattg ggatgaagaa acatgtcaat 4080 acacaggagc attacgggaa cacctcgagc aagtgtggaa caaagcttta cttggcacac 4140 ccccgagcca cgactacaaa ttagccttga aagatgaatt gagaccaaat gagaaaaatg 4200 cccaagggaa acggcgcctc ttgtggggtg cggatgctgg cttgaccctt gtgtgttgtg 4260 ctgctttgaa acccgcagca gtacgattgc agagtgtcgt tcctatgaca ccagtggctg 4320 taggtatcaa catggactcg gcccacattg aggtcatgaa cgagtccctc aagggacgag 4380 tgttatatgc cttagactac agcaaatggg acagtacaca gtccgccgct gtcactgctg 4440 catccctgga aattctttca tctttcatgg aaccatcacc tgtggtatcc tctgccattg 4500 aagctttgaa agcaccagca aggggcatgg tgaatgatgc catatttgtg gcgcgctctg 4560 gtctcccctc gggcatgcct ttcactagtg tcatcaattc aatcaaccac atgctgtaca 4620 tctcctcagc cattctgcaa gcatatgagt ccatgggact gccatataat gacaatgtgt 4680 tcaacataga gacagttcac acgtatggtg acgactgcct ctatggtttc acaccggcaa 4740 ctgcttctct agcatcaatg atcatagaca accttcgatc atatggcctc aaaccaacag 4800 cagctgacaa aggtgatgtc attgcccctg tacaagtgcc agtcttcttg aagagaacct 4860 ttgccacaac accacacggt ttgcgcgccc tgcttgatac tagctctatc ctgagacagt 4920 tccactgggt taaggcgcaa cgcacttgtg acattcagtc ccctccagca attgatataa 4980 agtcacgagc agcccaattg gaagtggcac tcgcttatgc aagtcagcat ggccatgaat 5040 ttttcgagaa ggccagggag attgcggaga agaccagcaa agtagagggg tatctcctgg 5100 ttaataccaa ctttgaacaa gctgtggcat gctacaacag ctggtacatt ggtggcacca 5160 caccagaaat gcccactacc aatgaaggct gtgggctatt agtgtttgag atggagggca 5220 atggctcccg acttgggaac tcacaaaccc aatcccatat ggatacttct aacactgtgc 5280 agggtgcacc gccgggcacg acaggccctg cggacgcacc ccttgtacct gttaatccag 5340 aacagcccaa tctccctgcc caacgcctgg agttggctat tgccacagga gcaacatcct 5400 ccaatgtccc tgactgtgtg cggagctgct ttgctctcct tcgcacgatt ccttggaaca 5460 ctcgacagcc ccagggatct ttgctcacag ctgtgtcttt acatcctgac atcaacccgt 5520 acacaaaaca tcttgctcaa atgtttgccg ggtggggggg agcaatggac attagagtca 5580 cagtctcagg ctcgggtcta tttgcaggca agcttgtctg tggcgtactg cctcctggag 5640 ttaatcccac tcttgtcaac gatccggggg tgcttccaca cgcactagtt gatgcgcgca 5700 ttactgaacc agcgtgcttc aatgtggctg atgtccgtgc cgtggattac caccgcacgg 5760 atggggatga ggcaactgcc acgcttggaa tctgggtact acaaccactt atcaacccct 5820 tttcaaacga agcagtatcc actgcttgga tctctattga aaccaaaccc ggaggagatt 5880 ttgatctgtg cttattaaaa ccccctggac aagccatgga gaatggaggc tcaccctcac 5940 accttttgcc acgcaaatta caacgggcac gtggcaaccg tgcgggaggt tatgcagttg 6000 ggatggtgat agttggctca gcacaccaag ttaaccgcca tttcaccgcc cttggcacca 6060 ctttcgggtg gtccactgca ccatatgaac caatgaggtg tgcctttggt ggtgtccatg 6120 tcggggcaac aaccccaaag aaaattggct attattggga ggttggtgca gatcaacgcg 6180 gacctctctt ccccaacata gttaaccatt ggccagattt tgctgtcaac tccaaatatt 6240 catggcccga tgcagactac atcccttaca atgctgttgt ggggacactg gtttcatttg 6300 ctgataatgg tgatgtgtct gaaaatgaag tggctacagc cttcgcagtg tctatgaaca 6360 cgccatccac tggcgggcgt ggcacgctgc gtgagaactt tgacccttca accatgcatc 6420 ttgtgcgtac caactcaact gcacaacccg ctgattggcc atcaggctca aatactggca 6480 atggatactt cacaccaatg tggggccacg gtagtggaaa cgcaatcaat gacaaagtta 6540 ctaacatgga gggtgctaat tacacctttg gtggttctgg tcaaaataac atagtgttgt 6600 ggattgaaaa gatcttctcc gaccaccctg gtcccacaat cctgtattcc tcacaattgg 6660 acagcacagc cactatcttc caatctggtc cagttaacat ccctgaaaac atgatggctg 6720 tgtataacgt aacaaccaat ggtgcggact ttcaagttgg gattcgccgt gatggttata 6780 tggtgacatc tggcactatt ggcactcggc aggaacttga tcccgacacc actttcactt 6840 atgttggact ttttcccctc tctgcttcac ttgttggccc acatgggaat actggccggg 6900 cccaaattgc ttggtcatga gttggctagt tggagcactt caaactcttg gtgggcttac 6960 tgatgtggct tctaccattt ctggtgtggt ctaccaacag aaacacttgg aacaattgag 7020 gaggcaaaat gatttgcagc aggaatggat ggcgcgcaat gaacaactgc agcgcgatgc 7080 catgcagctt tcacgtgacc tttccacaca cggcccggcc ctgagagcgc aggccgccat 7140 tgaggctggg tttgatgtgg ttagtgcgcg tcagcttgct ggtgcgggtg aacgcagaat 7200 taatggctat ctggaacaac ccatccgaac cattggcgag gccatggccg tgcaatcaag 7260 gggtaacctc gctaccctgt ctggcgccat gagcacattc caaagtggta cacaatttgg 7320 catgaaacaa ccaaagaatt ggaaacttca aagagctgaa caatcacggg gacctgttgt 7380 gaacctggga cccagacccc catctactga tttatgattt ctaaactata tttcttttct 7440 tccctttgtg gttgcacacg cgttcgggtg catgacggtc aattaagcga ttgacgccac 7500 //