ID AY646855; SV 2; linear; genomic DNA; STD; VRL; 7459 BP. XX AC AY646855; XX DT 08-JAN-2005 (Rel. 82, Created) DT 31-AUG-2006 (Rel. 89, Last updated, Version 3) XX DE Sapovirus SaKaeo-15/Thailand, complete genome. XX KW . XX OS Sapovirus SaKaeo-15/Thailand OC Viruses; Riboviria; Caliciviridae; Sapovirus. XX RN [1] RP 1-7459 RX PUBMED; 15623956. RA Guntapong R., Hansman G.S., Oka T., Ogawa S., Kageyama T., Pongsuwanna Y., RA Katayama K.; RT "Norovirus and sapovirus infections in Thailand"; RL Jpn J Infect Dis 57(6):276-278(2004). XX RN [2] RP 1-7459 RX PUBMED; 16485479. RA Hansman G.S., Takeda N., Oka T., Oseto M., Hedlund K.O., Katayama K.; RT "Intergenogroup recombination in sapoviruses"; RL Emerg. Infect. Dis. 11(12):1916-1920(2005). XX RN [3] RP 1-7459 RA Hansman G.S.; RT ; RL Submitted (07-JUN-2004) to the INSDC. RL Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen, RL Musashimurayama, Tokyo 208-0011, Japan XX RN [4] RC Sequence update by submitter RP 1-7459 RA Hansman G.S.; RT ; RL Submitted (13-JUL-2005) to the INSDC. RL Virology II, National Institute of Infectious Diseases, Tokyo, Japan XX DR MD5; af3fd6cd51d43c4697cf6f0abdb5bdb9. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2851512; 18258001. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3433708; 22973264. DR EuropePMC; PMC4498750; 26161646. DR EuropePMC; PMC4836733; 27092779. DR EuropePMC; PMC5035092; 27661997. DR EuropePMC; PMC553994; 15727685. DR EuropePMC; PMC5864949; 29567738. XX CC On Jan 11, 2006 this sequence version replaced gi:55982316. XX FH Key Location/Qualifiers FH FT source 1..7459 FT /organism="Sapovirus SaKaeo-15/Thailand" FT /strain="SaKaeo-15/Thailand" FT /mol_type="genomic DNA" FT /country="Thailand:Sakaeo" FT /note="SaV/SK15/TH/2004" FT /db_xref="taxon:300716" FT CDS 14..6859 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1; contains capsid protein" FT /db_xref="GOA:Q5IT20" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q5IT20" FT /protein_id="AAV69574.2" FT /translation="MASKPFYPMEFNLKVELLVLRSAHLRVGGREQIFETVEDLDIHVK FT GVVARLWRAHVRRSLAAIPSFTEEGLLDSFMSKPPVDINPDTTFRELFGIDPHEQFPLS FT IHDLAKLQGELVDAARNPGHALRRHYSTDSLTALINKITKFVPVQATLQEMQARRAFER FT ERAELFKELPHTDLDVNRQQKSYFYAMWRQVVKKGKEFFIPLVKCTSWRRKFTEPAEII FT RQVLVHFCEGMRSQFATNANYINLSLIAKLRPTVLTMIFQQHKNTYRGWLATVTALVEV FT YSSLFQDMRDTAVSAISAITLVFETIKDFIVNVIDLVKSTFQSQGPTSCGWAAIAAGAL FT LILMKLSGCSNTTSYWHRLLKVCGGVTTIAAAARAVVWVRDIIAEADGKARLKKYMART FT AALLELAASRDVTGTDELKRLLDCFTQLIEEGTELVQEFGTSPLAGLTRSYVSELESTA FT NSIRSTILLDTPRKTPVAIILTGPPGIGKTKLAQHLAAGFGKVSNFSVTLDHHDSYTGN FT EVAIWDEFDVDTQGKYVETMIGVVNTAPYPLNCDRVENKGKVFTSDYIICTSNYPTSVL FT PDNPRAGAFYRRVTTVDVSSPAIEDWKKKNPGKKPPPDLYKSDFTHLRLSIRPFLGYNP FT EGDTLDGVRVKPVLTSVDGLSRLMETKFKEQGNEQRNLWITCPRDLVSPAASGLKAYMA FT ANRALAQVFQEPSSQDIGETCTSRIYVSCNNPPPTFVGRVVKITAINPWDASLANSMLS FT MFETTSHIPASVQREIMYRVWDPLVHLQTREPNTQMLPYINRVVPVTTAFDFIRGLRHH FT LGLCSVKGMWRAYQGWSSSSSILEFLSKHMADVSFPHNPECTVFRAPDGDVIFYTFGSY FT ACFVSPARVPFVGDPPKNVHSNITRNMTWAETLRLLAETVAESLAHFGPFLLMMHNVSY FT LATRSSRDEEAKGKTKHGRGAKHSRRGGVSLSDDEYDEWRDLVRDWRQDMTVGEFVELR FT ERYALGMDSEDVQRCRAWLELRAMRMGAGAYQHATIIGRGGVQDTIIRTQPMRAPRMPR FT NQGYDEEAPTPVVTFTSGGEHVGYGCHMGNGVVVTVTHVASASDQVEGEDFTIRKTEGE FT TTWVNTNLSHLPHYQVGEGAPVYYSARLHPVTTLAEGTYETPNITVQGYHLRILNGYPT FT KRGDCGTPYFDSCRRLVGLHAATSTNGETKLAQRVSKTSKVENAFAWKGLAVVRGPDCG FT GMPTGTRFHRSPAWPEPVEGETHAPAPFGSGDSRYKFSQVEMLVNGLKPYSEPTPGIPP FT ALLQRAATHTRTYLETIIGTHRSPNLSFGEACSLLEKSTSCGPFIAGQKGDYWDEDKQC FT YTGVLAEHLAKAWDAANRGVAPQNAYKLALKDELRPIEKNAQGKRRLLWGCDAGATLVA FT TAAFKGVATRLQTVAPMTPVGVGINMDSYQVEVLNESLKGGVLYCLDYSKWDSTQHPAV FT TAASLGILERLSEATPITTSAVELLSSPARGHLNDIVFITKSGLPSGMPFTSVINSLNH FT MTYFAAAVLKAYEQHGAPYTGNVFQVETVHTYGDDCLYSVCPATASIFQTVLANLASFG FT LKPTAADKSETIVPTHTPVFLKRTLTCTPRGVRGLLDITSIKRQFMWIKANRTVDIHSP FT PAYDRGARSIQLENALAYASQHGHAVFEEVAELARHTAKAEGLVLTNVNYDQALATYES FT WFIGGAGLSQGNPSEEVTKLVFEMEGNARHDEPKAQSSNNVPLASPQDTIGPSAALLLP FT TQIETPNATAQRVELAAATGAISSNIPNCVRECFASVTTLPWTTRMAANTFLGAIHLGP FT RINPYTAHMSAMFAGWGGSFQVRVTISGSGLFAGRAITAVLPPGVNPANVQNPGVFPHA FT FIDARTVDPILINLPDIRAVDYHRVDGEEQTATVGLWVAQPLINPFQAGSVSTCWLSFE FT TRPGPDFDFCLLKAPEQQMDNGISPANLLPRRLGRSRGNRLGGRIVGLAVVAVAEQVNH FT HFMANSTTLGWSTLPIEPIAGAVSWYQTPSQTITTRGLLSAEGKGIIFPNIVNHWTDVA FT LSSKTAGQTAVPSTQEILNRSPGASGPVVMFQNNGDVNESSANNCVLTAASQDFTTLSS FT NFDAAGTWVWLPWTSSTPNGATNQNVYVTPTWINGDPSKPIHGKCTNMIGTNFQFGGTG FT TNNIMLWQEQHFTSFPGAAEVYCSQLESTAEMFQNNVVNIPSNQMAVFNVETAGNTFQI FT GILPNGYCVTNATVGTHQLLDFETGFRFVGLFPQSTSLQGPNGNAGRAVRFLE" FT CDS 6859..7359 FT /codon_start=1 FT /product="ORF2" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/TrEMBL:Q2NNI1" FT /protein_id="ABC61685.1" FT /translation="MSWFTGAALAAGSLVDMAGTVSSIVAQHRQIDLMAQANQIQRDWV FT NKQEALIKRGQDMSQDLAINGTARRVQSLVEAGFTPTDARRLAGSGETVQYGILDRPIL FT QRGVLTGISETHHLQTMQGALSAFKKGSSYGAPPAPAGFVNPNYQLAPPKVNLGYRPPS FT TNV" XX SQ Sequence 7459 BP; 1786 A; 2015 C; 1894 G; 1764 T; 0 other; gtgattggtt agtatggctt ccaagccatt ctacccaatg gagttcaacc taaaggttga 60 gctgcttgtg ctccgatctg cccacctcag ggtgggtggt cgagagcaga tttttgagac 120 tgttgaagac cttgacattc acgtcaaagg ggtggtggcc agattgtggc gcgcacatgt 180 gcgccgtagt ttggctgcca tcccgtcatt cacagaggag ggtctcttgg actccttcat 240 gtcaaaacca cctgttgaca tcaaccccga cacgacattt cgtgagttgt tcggcattga 300 cccccacgaa cagttccccc tgtccattca tgatttggca aaattgcaag gtgagcttgt 360 ggacgcggca cgtaacccag gacacgcgtt gcgacgccat tactccaccg attcgctcac 420 cgccctaatc aacaaaatca caaagttcgt ccccgtacag gccacgctcc aggaaatgca 480 agcacgcagg gctttcgagc gggagcgtgc tgaactgttc aaggaattgc cacacactga 540 cctggatgtc aatcgtcagc agaaatctta cttttatgca atgtggcggc aggtggtcaa 600 gaagggaaag gagttcttca ttcctctggt gaagtgtaca tcttggcgcc gaaagttcac 660 agagcccgcc gaaattatca ggcaggtttt ggtccacttt tgtgaaggga tgaggtcaca 720 atttgcaaca aacgccaatt acatcaacct gtcccttata gctaagttgc ggccaacggt 780 tctcaccatg atctttcaac aacacaaaaa cacctacaga gggtggttgg ccacagttac 840 cgctcttgtt gaggtttatt ccagcttgtt tcaggacatg agagacactg cagtgtcagc 900 aatatcggct atcaccttgg tgtttgagac catcaaagac tttatagtca atgtgataga 960 tctagtcaag agcacgtttc agtcccaagg cccgacttcc tgtggttggg ccgccattgc 1020 tgccggtgcc ctcctcatac tcatgaaact gtccgggtgt tcaaacacca ccagttattg 1080 gcatcgcctc ttgaaagtgt gtggtggtgt cacaaccatt gcggcagctg cccgagccgt 1140 tgtgtgggtg cgtgacatca ttgccgaagc cgacggcaaa gccaggctca aaaagtatat 1200 ggcgcgcacc gccgcactcc tagagttggc ggcttcccga gatgtgaccg gcaccgatga 1260 gctcaagcgc ttgctggact gtttcacaca actcattgag gagggcacag aactggtaca 1320 agaatttggc acatcaccac tagcgggtct gactaggtcg tatgtgagtg agctagagtc 1380 aactgcaaac agcattagga gcaccatcct acttgacaca cctaggaaaa ctccagttgc 1440 tattatcctc actggccctc caggaattgg taaaactaag ttagcccaac atctcgcagc 1500 gggctttggt aaggtgtcga atttctctgt cacactggac caccatgatt catacactgg 1560 aaatgaggtc gccatttggg acgaatttga cgtggacacg cagggcaagt atgtcgagac 1620 tatgattgga gttgtcaaca ctgcccccta ccctctcaat tgcgaccgag tggagaataa 1680 gggtaaggtt tttacatctg actacatcat ttgcacaagc aactacccaa catctgtgct 1740 tcctgacaac ccgcgtgccg gtgctttcta ccgacgtgtt acgacggtgg atgtctcgtc 1800 acccgccatt gaggattgga agaagaagaa ccccgggaag aagcctccac cagatttata 1860 caagagtgat ttcacacacc ttcggctgtc tattcgacca ttccttggtt acaaccctga 1920 aggagacact cttgatgggg ttcgggtgaa acccgtcctg actagcgttg atggcctgtc 1980 tcgcttgatg gagaccaagt ttaaagaaca aggcaacgag caacgcaacc tttggatcac 2040 gtgccctcgg gacttggtgt caccagcagc gtcaggcctg aaagcttata tggctgcaaa 2100 ccgagctctt gcacaagtgt ttcaggaacc atcttcacag gacattggtg agacctgcac 2160 gtctaggatc tatgtttcct gtaacaatcc tccacccaca tttgttgggc gcgtggtgaa 2220 gatcacggcc atcaacccgt gggatgcgtc attggccaac tccatgctgt ctatgtttga 2280 gaccactagt cacatcccgg cctcggtgca acgtgagatc atgtatcgtg tgtgggatcc 2340 actagttcac ttgcagactc gggagcccaa cacacagatg ctcccctata taaacagggt 2400 ggtgccggtc accacagctt ttgacttcat cagaggcctg agacaccatc ttgggctttg 2460 ttcggttaag ggcatgtggc gggcctacca aggctggagt agctctagct ctatcctgga 2520 attcctctca aagcatatgg cagatgtgtc ttttccccac aaccctgaat gcaccgtctt 2580 tcgggcgcca gacggcgatg tcatcttcta cacctttggg tcctatgcgt gctttgtgtc 2640 accagcacgt gttccatttg ttggcgaccc ccccaaaaat gtgcactcaa acataacacg 2700 caacatgacc tgggctgaaa ctttacgcct actcgccgag actgtggcgg agagtctagc 2760 acactttgga ccattcctgc tcatgatgca caacgtgtcc taccttgcaa ctcgctctag 2820 ccgggacgag gaggcgaaag gtaagaccaa acatgggcgc ggcgccaaac attccaggag 2880 gggaggggtc agcttgtctg acgatgagta cgatgagtgg cgagaccttg tgcgcgactg 2940 gaggcaagac atgaccgttg gggaatttgt ggagctacgc gagaggtacg cactcggaat 3000 ggactctgag gatgtacagc gctgccgcgc ttggttggaa ttgcgggcga tgcgcatggg 3060 ggctggggcc taccaacatg caaccataat tggcaggggc ggggtccagg ataccattat 3120 ccgaacccag ccaatgcgag ccccacgcat gcctcgcaat caaggttatg acgaggaagc 3180 cccgacacca gtcgtcacat tcacatccgg tggcgagcac gttgggtacg gctgtcacat 3240 ggggaatggg gtggttgtca cggtcacaca cgttgcctcc gcatctgacc aagtagaagg 3300 ggaagatttc accatacgga aaaccgaggg cgaaaccacc tgggttaaca ccaaccttag 3360 ccatctacct cactaccagg tgggtgaggg agcaccagtg tactactctg cccgcttgca 3420 ccccgtcaca acacttgctg aaggcaccta cgagactccc aacatcaccg tccagggtta 3480 tcacctccgc attctcaatg ggtaccccac gaaacgtggt gattgtggca ctccatattt 3540 cgattcgtgc cgccgtttgg tagggctgca cgcagccaca tcaacgaatg gcgagaccaa 3600 acttgcccag cgcgtctcga aaacatctaa agtggagaat gcttttgcct ggaagggact 3660 tgcagttgtc cgtggacctg actgcggggg catgcccact ggcacacggt tccaccgctc 3720 acccgcctgg cccgaaccag tggagggaga gacacacgcc cctgctccat ttggttcagg 3780 ggatagccga tacaagtttt cccaagttga gatgcttgtc aatggcctaa agccctactc 3840 tgagccgacc ccggggatcc caccagccct gttacaacgg gccgccactc atacgcgcac 3900 gtacctggag acaataatag gcacccacag atcgccaaat ttgtctttcg gtgaagcgtg 3960 ctcacttttg gaaaagtcca cttcctgtgg gcctttcatt gctggccaaa agggtgatta 4020 ctgggatgag gacaagcagt gttacactgg agtgttggcc gagcaccttg ctaaggcctg 4080 ggacgcggcc aacagggggg tggccccaca aaatgcatat aagctggcac tcaaagatga 4140 gctcagaccc attgagaaaa atgcccaggg caagcggcgg ctcctatggg gctgtgacgc 4200 aggggccact ttggtggcca ctgccgcatt caagggtgta gctacccggc tgcaaactgt 4260 cgccccaatg accccggtgg gcgttgggat aaacatggac agttatcagg ttgaagtgtt 4320 gaatgaatca cttaaaggtg gggtcttgta ctgcttggac tatagcaaat gggactcaac 4380 acagcaccct gcggtcacag ccgcctcgct cggaattttg gagaggctat cagaggccac 4440 cccaatcacc acatcagcag ttgagttgtt atcctcgcct gcgaggggac acctgaatga 4500 catagttttc attacgaagt ctggtttacc atctggaatg ccattcacca gtgtcatcaa 4560 ctccctcaac cacatgacct acttcgcagc agctgtgctc aaggcatatg aacagcatgg 4620 tgctccttac acaggcaacg tgttccaggt tgagaccgtt cacacctatg gtgacgattg 4680 cctatattca gtgtgcccag caactgcctc aatcttccaa acagtgttgg ccaatttggc 4740 atcctttggt ctaaaaccaa ctgctgctga caagagtgaa accattgtgc ccacccatac 4800 tcctgttttc ttaaaaagga ctctaacttg cactccacgt ggtgtacggg gtttgcttga 4860 tatcacatcc ataaagagac aattcatgtg gatcaaggcc aacagaactg tggacattca 4920 ttccccacca gcttacgacc gtggggctcg gagcatccag ttggagaacg ccctggctta 4980 tgcttcacag cacggccatg cagtcttcga ggaagttgcc gagttggccc gccacacggc 5040 caaggccgaa ggccttgttt tgaccaatgt caattatgac caggctctcg ccacctacga 5100 gtcatggttc ataggtggtg caggcctcag tcaaggcaac cccagtgaag aggttaccaa 5160 attagtgttt gaaatggagg gtaacgcccg ccacgatgag cctaaggctc agagcagcaa 5220 caatgttccg cttgcatcac ctcaggacac cattggcccg agcgcagcat tacttctccc 5280 aactcaaatt gaaaccccaa acgctaccgc ccagcgcgtg gaattggctg ctgccactgg 5340 agcaatctca agcaacatac caaactgtgt ccgtgagtgt tttgctagtg tcaccacttt 5400 gccatggacc actcgcatgg cagctaacac ttttctgggg gccatccacc ttggtcctcg 5460 aatcaacccc tacactgcac acatgagtgc catgtttgct ggatggggtg gcagtttcca 5520 agtgcgtgtc accatttcag gttctggcct gtttgctggt agggctatca ccgccgtcct 5580 acctcctggg gtcaacccag ctaacgtgca aaaccccggt gtcttcccac atgctttcat 5640 tgatgcacgc actgtggatc ccattctgat caacctgcct gacatcaggg ccgttgacta 5700 ccaccgagtg gatggggaag agcaaactgc aacagttggg ttatgggtag cacaacctct 5760 catcaacccg tttcaagcgg ggtcagtgtc cacttgctgg ctgagttttg aaactcgtcc 5820 agggcccgac tttgattttt gtcttcttaa ggcccctgaa cagcagatgg acaatgggat 5880 ttcaccagca aacctcttac cccggaggct tgggcggtca cgtggcaacc gacttggggg 5940 tcgaattgtc gggttggccg tcgtggcggt tgctgaacag gttaatcacc attttatggc 6000 caattccaca actctgggct ggtccacctt gccaattgaa ccaattgctg gtgctgtttc 6060 atggtaccaa accccaagtc aaaccatcac aacacgtggt ttgttgagtg ctgaaggcaa 6120 aggcatcatc ttcccaaaca ttgtcaacca ttggaccgat gtggcacttt ccagcaaaac 6180 ggccggtcaa acagccgtcc caagtaccca ggagattctc aatcgctcac caggtgcttc 6240 tgggcctgtg gtgatgttcc aaaacaatgg tgatgttaat gagagcagtg caaataattg 6300 tgttctgacg gcggcatccc aagacttcac tacgttgtct tccaactttg atgctgctgg 6360 cacgtgggtg tggctcccat ggacatcaag tacccctaac ggtgccacca accaaaacgt 6420 gtatgtcaca cctacttgga tcaatggtga tccttccaaa cccattcatg gtaaatgcac 6480 caacatgatt ggcaccaatt tccaatttgg tggcacgggc acaaacaaca tcatgttgtg 6540 gcaagagcag cacttcacat cgttccctgg agcggcggaa gtgtattgct cccagttgga 6600 aagcacggct gagatgtttc aaaacaatgt ggtgaatatt ccatctaatc aaatggccgt 6660 gtttaatgtg gaaaccgctg gcaacacctt tcaaattggc attcttccaa atgggtactg 6720 tgtgacaaat gccactgttg gcactcatca attgttggat tttgagactg gatttcggtt 6780 tgttggactt ttcccccaga gcacaagtct tcaagggccc aatgggaacg cagggcgggc 6840 cgtgcgtttc cttgaataat gtcttggttc acaggagctg ccctcgccgc tggatcctta 6900 gtggatatgg ctggcacagt ctcatccata gttgcacaac accggcaaat tgatttaatg 6960 gcacaggcaa atcaaattca acgagattgg gtcaataaac aggaggcatt gataaagaga 7020 ggacaagata tgtcacagga tttggcaatc aatggcactg ctcggcgtgt tcagtcctta 7080 gttgaggctg gcttcacccc caccgacgct cgacgtctcg caggtagtgg tgagactgtc 7140 caatatggca tcttggaccg ccctatcctg caacggggag tcttgactgg catttcagag 7200 acgcaccacc tacagacaat gcagggtgcg cttagtgcct tcaagaaggg ctccagttat 7260 ggggctccac cagcccccgc tggctttgtc aatccaaatt atcaattggc acccccaaaa 7320 gtaaatttgg gctatcggcc tccatcaacc aatgtgtaaa ttttccattc ctctttcttc 7380 ttttcttttc ttttctacat ggttcctcac gcgtccgggt ggataattgt gattaagcga 7440 tcacagccat gctttctgg 7459 //