ID AY639645; SV 1; linear; genomic RNA; STD; VRL; 3043 BP. XX AC AY639645; XX DT 29-JUN-2004 (Rel. 80, Created) DT 29-JUN-2004 (Rel. 80, Last updated, Version 1) XX DE Sugarcane mosaic virus polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-3043 RA Li X., Shi P., Fan Z.; RT "Partial genomic sequence of Tai'an isolate of Sugarcane mosaic virus"; RL Unpublished. XX RN [2] RP 1-3043 RA Li H.F.; RT ; RL Submitted (27-MAY-2004) to the INSDC. RL Department of Plant Pathology, China Agricultural University, Beijing RL 271018, PR China XX RN [3] RP 1-3043 RA Li X., Shi P., Fan Z.; RT ; RL Submitted (27-MAY-2004) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, No. 61, RL Daizong Street, Tai'an, Shandong 271018, China XX DR MD5; 282ece1d36e569353ed912b88cd2f500. XX FH Key Location/Qualifiers FH FT source 1..3043 FT /organism="Sugarcane mosaic virus" FT /host="maize" FT /mol_type="genomic RNA" FT /country="China:Tai'an" FT /db_xref="taxon:12224" FT CDS <1..2787 FT /codon_start=1 FT /product="polyprotein" FT /note="NIa-NIb-CP" FT /db_xref="GOA:Q6GUG7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q6GUG7" FT /protein_id="AAT57632.1" FT /translation="GQCGLPLVDVKSKHIVGIHSLASTSGNTNFFVAMPEDFNDYINNL FT VQTNKWEKGWHYNPNLISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQCEVTETWLTE FT CIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAKAYFAPLLGKYDKSRLNRAA FT FIKDISKYAKPIYIGEINYDVFEKAIQRVIKILRDVRMQQCTYVTDEDEIFQSLSLNAA FT VGALYTGKKKDYFKDFSNEDKSEIIMRSCERLYNGHLGVWNGSLKAEIRPIEKTMLNKT FT RTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPDGWIYC FT DADGSQFDSSLTPYLINAVLHIRLQFMEEWNLGEQMLRNLYTEIVYTPIATPDGSVIKK FT FKGNNSGQPSTVVDNTLMVILAFNYAMLSSSVKEEEIDNCCRMFANGDDLLLAVHPDFE FT HILDGFQNHFGNLGLNFEFTSRTRDWSELWFMSTRGIKCEGIYIPKLEKERIVAILEWD FT RSNLPEHRLEAICAAMVEAWGYPDLVQEIRKFYAWLLEMQPFANLAKEGLAPYIAETAL FT RNLYLGTGIKEEEIEKYFKQFAKDLPGYIEDYNEDVFHQSGTVDAGAQGGGSGSGTTPP FT ATGSGTGTRTPSTGTPAQGNTPPASGGSSGNNGGGQSGSNGTGGQAGSSGAGGQRDKDV FT DAGSTGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDRW FT YDAIKKEYETDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGDEQRVFPLKPVIENA FT SPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPA FT RAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH" FT mat_peptide <1..282 FT /product="NIa" FT mat_peptide 283..1845 FT /product="NIb replicase" FT mat_peptide 1846..2784 FT /product="coat protein" FT /note="CP" FT 3'UTR 2788..3043 XX SQ Sequence 3043 BP; 988 A; 622 C; 704 G; 729 T; 0 other; ggacaatgcg gtctcccatt agtagatgtc aagagtaagc acatagttgg aatacacagt 60 cttgcatcaa ctagtggaaa tactaacttc tttgtcgcca tgcctgaaga cttcaatgac 120 tacatcaata atcttgtgca aaccaacaag tgggaaaaag gatggcatta caacccaaat 180 ctcatttcat ggtgtggtct caacctagtt gactcagctc caaagggtct tttcaaaact 240 tcaaaactag tagaagacct tgatatgagc gttgaagaac aatgtgaggt aacagagaca 300 tggctcacgg agtgtattca ggataattta caggttgttg caaaatgtcc aggccaactt 360 gtcaccaagc acgttgtcaa aggcccatgc ccacactttc agctatacct gtcaacacat 420 gatgaagcta aagcatactt tgcaccatta ctcggaaaat acgacaagag cagattaaac 480 agagcagctt ttatcaaaga catttcaaaa tatgcaaaac caatctacat tggagaaatc 540 aattacgatg tctttgaaaa ggctatacaa cgtgtaatta aaattcttag agacgtgaga 600 atgcagcaat gcacgtatgt aacggacgag gatgaaatat tccagtcact tagcctcaac 660 gctgcagttg gcgccttata cacaggaaag aagaaagatt atttcaagga tttttcaaat 720 gaggacaaat cagaaattat catgagatcc tgtgagcgtt tatacaacgg acaccttggc 780 gtgtggaatg gttcactcaa agctgaaata aggcctatag agaaaacaat gttaaataag 840 actcggactt ttacagcagc accattagaa actttacttg gtggcaaggt ttgtgtcgat 900 gatttcaaca accaattcta ctcgcaccac ttagaaggtc cttggacagt tggaataaca 960 aagttttatg gtgggtggaa ccgtttgttg gaaaaattgc cagatggttg gatatactgc 1020 gacgccgatg gatcacagtt cgacagctct ttgacaccat atctcatcaa cgccgtatta 1080 cacattcgat tacaattcat ggaagaatgg aacttaggag aacaaatgtt gcgaaacttg 1140 tacactgaaa tcgtgtacac accaattgca acaccagatg gatctgtaat caagaaattt 1200 aaaggaaata acagcgggca gccgtcaaca gttgtagaca acacactcat ggtgatatta 1260 gcatttaatt atgcaatgtt atcaagtagt gttaaagagg aagaaataga caattgctgc 1320 cgaatgttcg ccaatggtga tgatttgcta cttgcagtgc atccagattt cgaacacata 1380 ttggacggat ttcaaaatca ctttggaaac ctaggtctca actttgagtt tacatcacga 1440 acaagagact ggtcagagtt atggttcatg tccacacgag gtatcaaatg cgaaggcatc 1500 tatataccaa agcttgagaa agaaagaata gttgccatac tcgagtggga tcggtcaaac 1560 ttacctgagc accgtctcga agccatttgt gcagccatgg tagaagcatg gggataccca 1620 gaccttgtcc aagagatacg gaaattttat gcgtggcttc tcgaaatgca accatttgca 1680 aatttagcaa aagagggcct agcgccatat atcgctgaaa ctgcactcag aaatctgtat 1740 ttgggcacag ggatcaagga agaagagatt gagaaatatt tcaaacagtt tgccaaagat 1800 ctccctggtt atatagaaga ttacaacgaa gatgttttcc atcaatctgg aactgtggat 1860 gcaggagccc aaggaggggg aagtggatct ggaacaacgc caccagcaac aggtagtgga 1920 acaggaacaa gaacaccatc tactggaact ccagcacaag gcaacacacc tccagcatca 1980 ggtggatcat caggaaacaa tggaggcggc caatcaggtt caaacggcac tggaggccaa 2040 gcaggctcaa gcggagcagg gggtcaaaga gacaaagacg ttgacgctgg ctcaacaggg 2100 aagatatcag tgccaaagct taaggcaatg tcgaagaaaa tgcgcctgcc aaaggcgaaa 2160 ggaaaagacg ttttacattt agatttccta ttaacatata aaccacaaca gcaagatata 2220 tcaaacacta gagcaactaa ggaagagttt gatagatggt acgatgccat aaagaaggag 2280 tacgaaactg atgacacaca aatgacagtt gtcatgagtg gtctcatggt atggtgcatc 2340 gaaaatggtt gctcaccaaa cataaacgga aattggacga tgatggacgg agacgaacaa 2400 agggtttttc cattaaagcc agtcattgag aacgcatctc caactttccg acagataatg 2460 catcatttta gtgatgcagc tgaagcgtat atagagtacc gaaactctac agagcgatac 2520 atgccaagat acggtcttca gcgaaatctc accgactata gcttagcgcg gtatgctttc 2580 gatttctatg aaatgacttc gcgcacacca gctagagcta aggaagccca catgcagatg 2640 aaagccgcag cagttcgtgg ttcaaacaca cgtctgttcg gtctggacgg aaatgtcggc 2700 gagactcagg agaatacaga gagacacaca gctggcgacg ttagtcgcaa catgcactct 2760 ctgttgggag tgcagcagca ccactagtct cctggaaacc ctgcttgcag tacctatagt 2820 atattactaa atagtacgtt cgtgaggcct tgcctcgagt gtatgtgagg ttctacctcg 2880 tatttactat ttcagtatat gtacttttag cgtgaaccag tctgcaggac acagggttgg 2940 acccagtgtc ttctggtgta gcgtgtacta gcgtcgagcc aatggacgga cggcactggg 3000 agtggtttta ccattggtgc tgcgagtctc ttggtgagag aca 3043 //