ID AY615210; SV 1; linear; genomic RNA; STD; VRL; 5129 BP. XX AC AY615210; XX DT 28-JUN-2004 (Rel. 80, Created) DT 28-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Gremmeniella abietina RNA virus L2, complete genome. XX KW . XX OS Gremmeniella abietina RNA virus L2 OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RP 1-5129 RX DOI; 10.1016/j.virusres.2004.12.005. RX PUBMED; 15845253. RA Tuomivirta T.T., Hantula J.; RT "Three unrelated viruses occur in a single isolate of Gremmeniella abietina RT var. abietina type A"; RL Virus Res. 110(1-2):31-39(2005). XX RN [2] RP 1-5129 RA Tuomivirta T.T., Hantula J.; RT ; RL Submitted (30-APR-2004) to the INSDC. RL Forest Pathology, Finnish Forest Reseach Institute, Vantaa Research Center, RL Jokiniemenkuja 1, P.O.B. 18, Vantaa FIN-010301, Finland XX DR MD5; 4f3767f8648ed756f00191c4c8eb4223. XX FH Key Location/Qualifiers FH FT source 1..5129 FT /organism="Gremmeniella abietina RNA virus L2" FT /host="Gremmeniella abietina type A" FT /isolate="SurS4" FT /mol_type="genomic RNA" FT /country="Finland" FT /db_xref="taxon:279539" FT CDS 272..2602 FT /codon_start=1 FT /product="putative coat protein" FT /db_xref="GOA:Q6GYC1" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q6GYC1" FT /protein_id="AAT48884.1" FT /translation="MANAYETNFQTANASPLTGTLADPVGGTIQADQYRRYRAGVFMSV FT PDMGHVSNVGRSIFYEVGRHHGRARDLLAAPHAEAIPIDCSVDINAAEAANFEGMARRF FT SNFSPQWVKMDLAGMVERLAKGVTAAGVFGGIDTGTLRGGQAIRVTALGTLDSPQTASI FT NSVFIPRTVDTVGNDHVFAVLVSAANGEGAAVTTDVVRLDANTNQPMIPAVAGASFATA FT CVEALRILGANMEASGAGDIFAYAVTRGVHAGVSVVAHTDEGGWFRNVLRFDRFRVPYG FT GINQGLRQYPALPALASTSPSSIAAWVDAIALKTAAAVAHCDPLVPGEGGWYPSVFTAG FT QNGTSAPGSSEGAGVGDLEARSIGRQIASDIGRFAPTYCRALGTLFGLHTSSGIAESHL FT STVAMRALTQDVSTDRHLRHETVAPYFWIEPTSLIAVNAFGTPAEAEGYGSKVTPGDTR FT SEPCFERFRLLQKGTTANHMTVAFKMRTARTSALVSAYAAAPAPLADLKLYQFDESSIV FT LPGDQLPTQGDVASKHAAADPLSSYLWKRGQSCFPAPAEFINTNSNYGAKVRLVTWDDD FT FNASLSDLPNDEEMATGVVTFRVTVPTGLASAGSNAENREAKRARTRGAIALAQAVLRA FT RATGLAVSPSMEVSDVPPTFDTPPLLPAPIYGDTQSASGPRDPGPVPVLAVGGGLDVGR FT IARGAPLPPTAHHMPQRAPRIAGAVVPPGGPTAGPPAAAGGPVAPNVLPPPPAGPADSQ FT DPLPAPPAHLPTDATAAEAVPAQ" FT CDS 2599..5076 FT /codon_start=1 FT /product="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:Q6GYC0" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q6GYC0" FT /protein_id="AAT48885.1" FT /translation="MIESPVSIRANEAGIVGQYLKGLLNMEWASGVMVLSFSQQISEVY FT KPTFNGLRPTDLQRAAAAYLVPDFPVQVRIERGSVLSLLSQVIDPPARVTDRHSFRWLC FT DPKASYAAFPPKQHPGAVNKVNVYLNEVASSLLSLDPAAYSSASQALWPYRGKIANDQA FT SAIILYGYGLRAQAVPDAMHVAATLATTPDLAKALTNFLKATGANGSRLGALLCESNVL FT LGRAAGPADLSEEARYRTSSDVESRLAIFSDADLSAAIDSVLDEEIKRVEGSQHIEFDS FT YQEHWNDRWAWAVNGAHSGHVSKLYPRVPKPPGMLREHRRAWLESVTEDPRIDWDGKTF FT VSASPKLEAGKTRAIFACDTVNYLAFEHLLAPVEKRWRNSKVILDPGRGGHLGMIFRTT FT AARARAGVSMMLDYDDFNSHHSTRAMQILFQRLGDRVGYPADKLAKLVASFEKMYIYNG FT MEQVGRVRGTLMSGHRGTTFINSVLNKAYLLIVLGEDLFERSXALHVGDDVYFGVRTYA FT EAGEVVTRIKNSPLRMNRMKQSVGHVSTEFLRNATSGRSTYGYFARAVASTVSGNWVNE FT MALSPSEALSSIIGAARTLVNRSGAENLPLLLHPSLVRMTGLPREDHKKLRELLLGTTA FT LDNGPQYSLGGYYTSVSSLITIAASDRHGYTPLPREATTAYLSCAADPLEVNVLTQAGV FT SVVSAMEEASFRKSLPARYTGYETLRLGPKSLIRSIGTASVADLISVSPPRGVLERYPL FT LTLAKRRLPEYLVRWAVSVAGGNPSAPDIGMEAWGEFKHGCMIATPMSYSDAATFGKRT FT VSTVLTCPLDAHV" XX SQ Sequence 5129 BP; 1054 A; 1531 C; 1369 G; 1174 T; 1 other; tgataagacg ccagtcgata ccgaaaggtt cctgcttgcg tgcgttccct actactggga 60 gtgcgggatt ccgagtgtcc ctttatctac tactcgtgtt gtgagatatg gcgaaagccc 120 ctatctcgct gtgtgcccca tggtcccctg gaccgcgcaa ccgtgacctg aaaagactct 180 tggtagcatc gggctttgtt atagtggccg ggcgagggtt ccgaagaccc ctaaaactac 240 aacaattgca cacttacaca acttctcaac tatggccaac gcctacgaga ccaatttcca 300 aaccgccaat gctagcccac ttactgggac cctagctgac ccggtcggcg gtacgatcca 360 agccgaccaa taccgtcgct atcgcgccgg tgttttcatg tccgtcccgg acatgggcca 420 tgtgagcaac gtgggacgca gcatcttcta cgaagttggg cgtcaccacg gccgcgctcg 480 cgacctctta gccgcgcccc acgcggaagc tatccctatc gactgcagtg tcgatatcaa 540 cgctgctgaa gcagcaaact tcgaagggat ggctcgccgc ttctcgaatt ttagcccgca 600 atgggttaag atggacctgg ctgggatggt cgaacgcctc gccaaaggtg tcactgctgc 660 cggtgttttc ggtggtattg atacaggcac tctacggggt ggacaggcca tccgggttac 720 cgcactcggt accttggact cgcctcagac ggcgtctatc aacagtgtct ttattcctcg 780 cactgttgac accgtcggca acgatcacgt ctttgctgtc cttgtatccg ctgctaacgg 840 agaaggggct gccgttacga ccgacgtggt tcggctggat gctaacacca accagcccat 900 gatcccagca gtggcaggtg cctcctttgc tactgcttgc gttgaagccc tccgcatcct 960 cggagccaat atggaggcat cgggcgcagg cgatattttc gcttacgctg taactcgtgg 1020 cgtccatgcg ggtgtatctg tggtcgccca taccgacgaa ggcggctggt tccgtaatgt 1080 tttgagattt gatcgtttcc gtgttccgta cggcggtatc aaccaggggt tgcgccagta 1140 tcctgctctc ccggctttgg cgtcgacctc accttcttcg atagcagcat gggtggacgc 1200 tatcgccttg aagaccgccg ctgctgtcgc tcattgcgac cctctcgttc ccggtgaagg 1260 cggatggtac ccttcagttt ttacagctgg gcagaacggg acctccgctc ccgggtcaag 1320 tgaaggtgcc ggggtcggtg acttggaggc ccgttccatc ggtaggcaga tcgcttctga 1380 catcgggcgc tttgcaccta cctactgccg cgcgctgggt acactcttcg ggctgcatac 1440 ttcgagtggt atcgcagaga gtcacctctc aaccgtcgct atgcgtgctc taacccagga 1500 cgtgagcact gaccgacatc tgcgacacga aactgtcgct ccctacttct ggattgagcc 1560 cacttcgctc attgcagtca atgcattcgg cactcccgcc gaagcagagg ggtacggttc 1620 aaaagtcacc cctggtgata cgcgaagtga accatgcttc gaacgcttca ggctgttgca 1680 gaaaggtact actgccaacc acatgacagt agcgttcaag atgcgtacgg cccggacttc 1740 ggccttggtt agcgcgtatg ctgcagcgcc tgctcccttg gcagacctca agctgtatca 1800 gtttgatgag tcttctatag tgctgcccgg cgatcagcta cctacccagg gtgacgtagc 1860 ttccaaacac gccgccgccg acccactctc ttcatattta tggaagaggg gtcagtcgtg 1920 cttccctgcg cccgcggagt tcatcaacac gaattccaat tacggcgcta aagttaggtt 1980 ggtcacatgg gacgatgatt tcaacgcttc cttgtctgac ctccccaacg atgaggagat 2040 ggcgactggc gttgtcacat tccgcgtgac ggtaccgacc ggcctcgcta gtgctggtag 2100 caacgctgaa aatcgcgaag ctaaacgtgc tcgtacccgc ggtgccatcg ctttagccca 2160 agcagtcttg cgagctaggg ctaccggtct ggctgtttcc ccctcgatgg aggttagcga 2220 tgtgccgcct acattcgaca cgcccccgct actcccggcc ccgatatacg gcgacaccca 2280 gtctgcgtcc ggaccgcgcg atcctggacc ggtaccagtg ctcgctgtcg gcggaggcct 2340 ggacgtcggc aggattgcgc gtggtgcacc tctgcctccg acggcacatc acatgccgca 2400 acgtgctcct aggattgctg gtgctgtcgt accgcccggt ggacctaccg ctggccctcc 2460 agctgccgct ggcggtcctg tagccccgaa cgtcctccca cctcctcccg ctggccccgc 2520 tgattcacag gatcccctcc ccgccccacc ggcacacttg ccaaccgatg ccactgctgc 2580 tgaagcagtg cccgctcaat gattgagtcc cctgtgtcta tacgagctaa tgaagccggc 2640 atcgtaggac aatacctgaa agggcttctc aacatggagt gggcgtctgg cgttatggtg 2700 ttatctttct ctcagcagat ttcggaggtc tacaaaccga cattcaacgg tttgagaccg 2760 acggatttac aaagggcagc tgctgcatat cttgttcccg attttcctgt acaagtccgt 2820 atcgaacgcg gatctgtact ctccttacta tctcaagtca tcgaccctcc ggctagagtg 2880 accgaccgcc attcgttccg gtggttgtgt gatcccaagg cgtcctatgc tgcatttcca 2940 cctaagcaac atccgggcgc tgtgaacaaa gtgaacgttt atctcaacga ggtggcatcc 3000 tccctccttt ctctggatcc agccgcctac tcttctgcta gccaagccct ctggccatac 3060 agagggaaga tagccaacga ccaagcaagc gcaattattc tgtacggcta cggtctacgc 3120 gcacaggctg tacccgacgc tatgcacgtg gctgctacgc ttgcgaccac tcccgatctg 3180 gcaaaggccc tcaccaactt cctcaaagca acgggcgcca acggttcgcg tttgggtgct 3240 ctcctatgcg aaagcaacgt ccttctgggt cgcgctgctg ggcccgccga tctctcagag 3300 gaggcccgat atcgtacgag cagcgatgtc gagagtcgtc tggctatctt cagtgacgct 3360 gacttgagtg cggctatcga cagtgtctta gatgaagaga tcaaacgagt cgagggctcg 3420 cagcacattg agttcgactc gtatcaagag cactggaacg accggtgggc ttgggcagtc 3480 aacggagccc actcaggcca cgtctcaaag ctatatcctc gcgtgccaaa gccaccagga 3540 atgctccgtg aacacagacg cgcttggctc gaaagtgtga ctgaggaccc acgtatcgat 3600 tgggacggta agacattcgt gtccgcatct ccgaaattag aagccgggaa gactcgagca 3660 atctttgcat gcgatactgt gaactacctc gctttcgagc atctgcttgc accggtagaa 3720 aaacgctggc ggaattccaa agtgattctg gatcctggac gtggcggtca tctcggcatg 3780 attttccgta cgacagctgc tcgtgcccgt gccggtgtct ccatgatgtt ggattatgat 3840 gatttcaatt ctcaccattc tacacgagcg atgcagatac tattccagcg tttaggagac 3900 cgcgttggtt acccagctga caaactggct aaacttgtcg cttcattcga gaaaatgtac 3960 atttacaatg gaatggagca agtcggtcgt gtgagaggta cactaatgag tggccatcga 4020 ggcacgacct tcatcaattc cgtcttgaac aaggcgtatc tccttatcgt actaggagaa 4080 gacttgtttg agcgcagcgk ggctttgcac gtgggtgacg atgtttactt cggtgtacgt 4140 acgtatgctg aagcaggcga agtcgttacc cggatcaaga attcgcctct gcgtatgaac 4200 cgaatgaagc aatcggtagg tcacgtatct actgagttct tacgcaacgc cacctcaggc 4260 cggtccacct acggatattt cgctcgtgct gtagccagca ccgtatccgg aaactgggtg 4320 aatgagatgg ccctcagtcc aagcgaggcg cttagctcta taatcggggc tgcgcgcacc 4380 ctcgttaacc gatccggcgc agaaaacttg ccactgctcc tccacccaag tcttgttcgc 4440 atgacgggtt taccaaggga ggaccacaag aagctgcgcg aattgctgtt ggggacaaca 4500 gctttggata acggccccca atacagcctg gggggctact acacatccgt cagcagccta 4560 atcactatcg ccgctagtga ccgtcacggc tacaccccgc tcccccgcga ggcaacaact 4620 gcttatttaa gctgtgccgc ggacccgctc gaagtgaacg tgttgaccca agctggtgtc 4680 agcgttgtca gcgcaatgga agaggcgagt ttcaggaagt cgcttccggc tcgctatact 4740 ggctacgaga cattacggct aggccctaag tcattgatca ggtctatagg tacagcatcc 4800 gttgctgacc tcatctccgt ttcccccccc cgcggagttc ttgaacgcta ccctctcctc 4860 accctggcga aaaggaggct cccagagtac ttagtacgct gggcagtctc tgtcgccggc 4920 ggcaaccctt ctgcccccga catcggcatg gaggcttggg gggaatttaa acacggctgc 4980 atgattgcga ctccgatgtc gtactccgat gcagctacct ttggcaagcg gacagtttca 5040 actgtattaa cttgcccact tgacgcccac gtgtaagcta ccccagctta cggtgtcaag 5100 aaattcgagg ccctaagggg ccaaattgc 5129 //