ID AY613852; SV 2; linear; genomic RNA; STD; VRL; 3883 BP. XX AC AY613852; XX DT 06-APR-2005 (Rel. 83, Created) DT 13-JAN-2015 (Rel. 123, Last updated, Version 7) XX DE Pelargonium line pattern virus isolate PV-0193, complete genome. XX KW . XX OS Pelargonium line pattern virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-3883 RX DOI; 10.1007/s00705-004-0464-y. RX PUBMED; 15645374. RA Castano A., Hernandez C.; RT "Complete nucleotide sequence and genome organization of Pelargonium line RT pattern virus and its relationship with the family Tombusviridae"; RL Arch. Virol. 150(5):949-965(2005). XX RN [2] RP 1-3883 RA Castano A., Hernandez C.; RT ; RL Submitted (30-APR-2004) to the INSDC. RL Institute of Molecular and Celular Plant Biology, Spanish Higher Research RL Council, Avenida De Los Naranjos S/N, Valencia 46022, Spain XX RN [3] RC Sequence update by submitter RP 1-3883 RA Castano A., Hernandez C.; RT ; RL Submitted (25-APR-2014) to the INSDC. RL Institute of Molecular and Celular Plant Biology, Spanish Higher Research RL Council, Avenida De Los Naranjos S/N, Valencia 46022, Spain XX DR MD5; 775d2851106115ac819a2cd131833faa. XX CC On Apr 25, 2014 this sequence version replaced gi:52631180. XX FH Key Location/Qualifiers FH FT source 1..3883 FT /organism="Pelargonium line pattern virus" FT /host="Pelargonium zonale" FT /lab_host="Chenopodium quinoa" FT /isolate="PV-0193" FT /mol_type="genomic RNA" FT /country="Germany" FT /db_xref="taxon:167019" FT 5'UTR 1..6 FT gene 7..2304 FT /gene="p87" FT CDS 7..2304 FT /codon_start=1 FT /transl_except=(pos:727..729,aa:OTHER) FT /gene="p87" FT /product="RNA dependent-RNA polymerase" FT /note="p87 is a readthrough protein of p27" FT /db_xref="GOA:Q56TL0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q56TL0" FT /protein_id="AAU84998.1" FT /translation="MAHYFGEALQLGLFVAKASCWASKELALLGPNLAWIATRPLRNDA FT NAILKRIGVHGLAKIPCNFDSDELTIANDCIVKSDRNLEDESIVVEEVEEGEEKKKSKK FT VTRRRVKTKPTFAAVLAADAKNYYGCLPSATRANELSVMKYLVSKCQEHKLTITQTREV FT SAMAFALTFTPDENDKLIYKYLNSTEVFERRVDYAKARGVDKCWFELLKRPWHARAWRR FT VVGRIFGLPEQQAFEFVKXGCLMDTCGVDTKVYRGEHRWVKEFRGAANPKPRRLYKISG FT VSPEVRWGVHNNSFVNLRRGLMERVFYVERSGELLPCPSPEAGLFKRLFNKVGRRVIRF FT CGHHSPIPRASYPGMFQGRKRTIYENAVRSLVDRPYNIRDSYLKTFVKFEKLDFSKKPD FT PAPRVIQPRHPRYNVELGRYLKPFEHFCYKALDKLWGGPTVMKGYTVEEMGGIIKDSWL FT QFQKPVAIGFDMSRFDQHVSVDALKFEHSIYKACFSKDGNLATLLGHQISNRGSAYAND FT GYLRYRVEGKRMSGDVNTGLGNCLLACTITKFLMEEIGVRSRLVNNGDDCVLICEAGDC FT RAVEGSLTVGWRRFGFTCIAEKPVYELEKIEFCQMSPIQISDSRVKLVRKPQKSISKDA FT HSTTPLTTIQLAQEWTRAIGEGGLSLTSGIPVVQEFYQCLIRNGKKATKESKKMAFYGD FT YYWKWVNQHSGKYEPVTEEARHSFHLAFGVSPDQQLALEDIYSRKSLLWESSPFTFEVG FT AIEWIFNQKIPI" FT gene 7..729 FT /gene="p27" FT CDS 7..729 FT /codon_start=1 FT /gene="p27" FT /product="replicase protein" FT /db_xref="UniProtKB/TrEMBL:Q56TK9" FT /protein_id="AAU84997.1" FT /translation="MAHYFGEALQLGLFVAKASCWASKELALLGPNLAWIATRPLRNDA FT NAILKRIGVHGLAKIPCNFDSDELTIANDCIVKSDRNLEDESIVVEEVEEGEEKKKSKK FT VTRRRVKTKPTFAAVLAADAKNYYGCLPSATRANELSVMKYLVSKCQEHKLTITQTREV FT SAMAFALTFTPDENDKLIYKYLNSTEVFERRVDYAKARGVDKCWFELLKRPWHARAWRR FT VVGRIFGLPEQQAFEFVK" FT gene 530..913 FT /gene="p13" FT CDS 530..913 FT /codon_start=1 FT /gene="p13" FT /product="p13" FT /note="unconfirmed expression" FT /db_xref="UniProtKB/TrEMBL:Q56TK8" FT /protein_id="AAU84999.1" FT /translation="MKMTNSSTNTSIQPRCLNDGWIMPRRAGLTSAGLNCSRGLGMLEH FT GGEWLGGFSDCLSSRLSSSSNRDASWTLAVWTRKCTAGNTAGLRSSVGRQTPSRVGCIR FT LVGYPLKLDGGCTTIVLSTSEEG" FT gene 2274..2465 FT /gene="p7" FT CDS 2274..2465 FT /codon_start=1 FT /gene="p7" FT /product="movement protein" FT /db_xref="GOA:Q56TK6" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q56TK6" FT /protein_id="AAU85000.1" FT /translation="MDIQSKDSNLSVKEAGKSAKRGSTKNKLDVAHSGVSKGTSRDLVG FT ANFVTVADKVEFVVHLNF" FT gene 2371..2637 FT /gene="p9.7" FT CDS 2371..2637 FT /codon_start=1 FT /transl_except=(pos:2371..2373,aa:Met) FT /gene="p9.7" FT /product="p9.7" FT /note="non-canonical start codon" FT /db_xref="GOA:U5XKN5" FT /db_xref="UniProtKB/TrEMBL:U5XKN5" FT /protein_id="AHY02163.1" FT /translation="MEYPRVHLAILSVLISSQLLIKWNLWSISISDFLPQPHSLHPNLL FT VCIVLCIFFSSVLSQGQSYSYSYFSTSTSDKFISVAVGNGGQG" FT gene 2621..3637 FT /gene="p37" FT CDS 2621..3637 FT /codon_start=1 FT /gene="p37" FT /product="coat protein" FT /db_xref="GOA:Q56TK4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q56TK4" FT /protein_id="AAU85003.1" FT /translation="MAAKDNPAVIAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG FT NPPTVVVPRTTRLVAGNPTNARRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF FT SMNHKYETAAHKPLLVTLPVSKETRFLRDKCTDDSKLVDSGAVHVLVDGSHEGRLGELF FT FELTIVFSEPTFCTHHSQVIKGLKESEGPEYVKVEPDKETVKLIFQAAGAYLISIVASK FT LERIGQLGASEGDKLVVESTDKSACLCRIEAEQPGSAVVLVYASREAITLRAYINKL" FT 3'UTR 3638..3883 XX SQ Sequence 3883 BP; 1035 A; 894 C; 1067 G; 887 T; 0 other; aacaaaatgg cacactattt tggggaggca ctgcaattgg gcctgtttgt tgctaaggcc 60 agctgctggg ccagtaagga gttggcgctc ctcggtccta acttggcctg gatagctact 120 agaccacttc gcaacgatgc taatgccatc ctaaagcgga ttggcgtcca tgggttggcc 180 aaaatcccgt gcaacttcga ctccgatgag ttaacgatcg caaatgactg cattgtgaag 240 tccgacagga acttggagga tgaatcgatc gtggtggagg aggtcgagga gggggaggag 300 aagaagaaga gcaagaaggt gacaaggagg agggtgaaaa ccaagcctac cttcgcggcc 360 gtcctggcgg ctgacgcgaa gaattattac ggttgcctcc cgagtgccac cagggcaaac 420 gagctcagcg tcatgaagta cctagtttcg aagtgtcaag agcacaagct gaccataact 480 cagacacgag aggtaagtgc catggctttt gcgttgacct tcacgccgga tgaaaatgac 540 aaactcatct acaaatacct caattcaacc gaggtgtttg aacgacgggt ggattatgcc 600 aaggcgcgcg gggttgacaa gtgctggttt gaattgctca agaggccttg gcatgctcga 660 gcatggagga gagtggttgg gcggattttc ggactgcctg agcagcaggc tttcgagttc 720 gtcaaatagg gatgcctcat ggacacttgc ggtgtggaca cgaaagtgta ccgcggggaa 780 caccgctggg ttaaggagtt ccgtggggcg gcaaacccca agccgcgtag gttgtataag 840 attagtgggg tatcccctga agttagatgg ggggtgcaca acaatagttt tgtcaacctc 900 agaagagggt taatggaaag ggttttctac gtcgaaagat caggggaact cctaccgtgt 960 ccgtctccgg aggctggttt gtttaaacgg ttgttcaaca aggttgggcg gcgggtgatt 1020 aggttttgcg gccatcattc cccgatccct agggcttcgt accctgggat gtttcagggc 1080 aggaaacgca cgatttatga aaacgcagtc cggtcccttg ttgaccgacc ttacaatatt 1140 agggatagct atttaaaaac ttttgtcaag tttgaaaaat tagactttag caagaaacct 1200 gatcccgcgc ctagggtaat ccaacccagg catccgaggt acaacgtaga actaggaaga 1260 tatctgaagc cttttgagca tttctgctac aaggcactag acaagttgtg gggagggccc 1320 accgttatga aaggatacac agttgaggaa atgggaggga ttatcaagga cagctggctc 1380 caattccaga aaccagtagc tattggcttc gacatgagtc gattcgatca acatgtttct 1440 gtggatgccc tgaagtttga gcacagcatt tacaaggctt gcttctcgaa agatgggaat 1500 ctggcaactt tgctaggtca ccaaatatct aacagaggct ctgcttatgc taatgatggc 1560 tacttgagat atagagtgga agggaaaagg atgagcgggg acgtgaacac cgggctgggc 1620 aattgcttgt tggcgtgcac tatcacaaaa tttttgatgg aagaaattgg cgtgaggtct 1680 agactggtga acaacgggga cgactgcgtg cttatatgtg aggccggaga ttgccgcgct 1740 gtcgagggta gcttgacagt ggggtggcga cggtttggct tcacctgcat agcggaaaaa 1800 cccgtttacg agctggaaaa gatcgaattc tgtcaaatga gccctataca gattagtgat 1860 tcccgcgtca agctagtgag gaaaccccag aaaagcatat ctaaagatgc acattccacc 1920 acccccctca ccaccataca gctagctcaa gaatggaccc gcgctatcgg agaaggcggg 1980 ctgtctctga ccagcggcat cccagtggtt caggaattct accaatgcct catccgtaac 2040 ggaaagaaag cgacaaagga atcaaagaaa atggccttct acggggacta ctattggaag 2100 tgggttaacc agcatagcgg caagtatgaa ccggtgactg aggaagctcg gcattcattc 2160 cacttggcgt ttggggtcag ccctgaccaa cagttggccc tagaggacat atactctcgc 2220 aagtcgctac tttgggagtc ctcccccttt acatttgaag ttggcgctat cgaatggata 2280 ttcaatcaaa agattccaat ctaagtgtaa aggaagcagg gaaatcagca aagcgcggaa 2340 gcacaaagaa caagctggac gtagctcaca gtggagtatc caagggtaca tctcgcgatc 2400 ttgtcggtgc taatttcgtc acagttgctg ataaagtgga atttgtggtc catctcaatt 2460 tctgatttct tgccacagcc acactcgtta caccctaatt tacttgtctg cattgtgttg 2520 tgcatcttct ttagttcagt tcttagccag ggacagagtt atagttatag ttacttttca 2580 actagcacca gtgataaatt catctcagta gctgtaggaa atggcggcca aggataatcc 2640 ggcagtcatc gcagccgtgg caaggcggga acagtgggca atcaagctcc aatccaaggg 2700 ttggggctca ttgtccaaag cacagaaagc cactgctcgc tcgtacggga tcgggaaccc 2760 tccaacagtc gtggtgcctc gcactacccg gctggtggca gggaatccca caaatgcgag 2820 gcgggcgcgg ggagagccgg gtaatgccaa aatgggcacc accataacca agcaggaata 2880 catgggcgag cttcattctt cttcaaagat tgaaacttac ttgctcgacc ccaagaatgt 2940 gaggagcttc cctcagttaa gcgggcttgc aatcggctac aacaagtaca agatcactga 3000 cttcaaggtg cgatacagtc ctaaatgtag cgacagtgag tgtgggttga ccatagctta 3060 ctctagcgac tcttccgatc caccgccgaa gaacaaattc aacttgttta gcatgaatca 3120 caagtatgaa acagccgcgc acaagccact cctagtgaca cttcccgtat ccaaagagac 3180 cagattcttg cgggacaagt gtactgatga ttccaaactc gtagacagtg gggcggtgca 3240 tgtcctggtg gacgggagcc acgaaggcag gctcggagaa cttttcttcg agttaaccat 3300 cgtgttttct gaaccaacct tctgcaccca ccactcccaa gtcatcaaag gactcaagga 3360 gagtgaaggg cccgaatacg ttaaggttga gcctgacaag gagaccgtga aacttatctt 3420 ccaggcggca ggggcatacc taatttctat agtggcctct aaactagagc gaatcgggca 3480 gcttggtgct tctgaaggtg acaagctggt agttgagagt actgataaga gtgcctgcct 3540 ctgtagaata gaggcggagc aaccaggtag tgctgtagta ttagtttatg ccagcaggga 3600 ggctattacc ctgcgagctt acatcaacaa gctgtgagga aagccactgc ggtggggtca 3660 gtctcctggt gcgccaacac ccagaagggg agacaacttc agtggttcaa aacccgatgc 3720 ttcgtgtaag cctagaaaaa tccaaaaaca gagtgctact gctttcagtg tgcgagcttt 3780 atttgctcac ttcctccgtc gataaaatcc cgaattttcg ggtgggcttc ggcggacatc 3840 cttaatgaag aacggggggg taacccaccc ccctgatctg ccc 3883 //