ID AY610954; SV 1; linear; genomic RNA; STD; VRL; 5673 BP. XX AC AY610954; XX DT 09-NOV-2004 (Rel. 81, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 2) XX DE Barley yellow dwarf virus - GAV isolate 38W, complete genome. XX KW . XX OS Barley yellow dwarf virus GAV OC Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus. XX RN [1] RP 1-5673 RA Du Z., Wang D.; RT "Three newly sequenced barley yellow dwarf virus-GAV isolates: potential RT evolutionary recombinants of luteovirus PAV and MAV"; RL Unpublished. XX RN [2] RP 1-5673 RA Du Z., Wang D., Jin Z., Wang X., Zhou G.; RT "Sequence variations among barley yellow dwarf virus-GAV isolates in the RT variable 3' regions"; RL Unpublished. XX RN [3] RP 1-5673 RA Du Z., Wang D., Jin Z., Wang X., Zhou G.; RT ; RL Submitted (28-APR-2004) to the INSDC. RL Chinese Academy of Sciences, Institute of Genetics and Developmental RL Biology, Datun Road No.5, Beijing, Beijing 100101, P.R.China XX DR MD5; 5dbb3f53e0e63a0f3e37d1c1c9f45d05. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5673 FT /organism="Barley yellow dwarf virus GAV" FT /isolate="38W" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:224578" FT CDS join(143..1159,1159..2745) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase fusion protein" FT /note="produced by low-frequency -1 frameshift" FT /db_xref="GOA:Q5UUX2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5UUX2" FT /protein_id="AAV52261.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDIAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGNEPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGRRTFEDTPITNHSRM FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY" FT CDS 143..1162 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="gp2; ORF1" FT /db_xref="GOA:Q5UUW9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5UUW9" FT /protein_id="AAV52262.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDIAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2859..4823 FT /codon_start=1 FT /transl_except=(pos:3444..3446,aa:OTHER) FT /product="aphid transmission protein" FT /note="gp3; low abundance; produced by readthrough of stop FT codon at end of ORF3; translated from subgenomic RNA 1" FT /db_xref="GOA:Q5UUW8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q5UUW8" FT /protein_id="AAV52266.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGRSLHFNMTPKXVDSSTPEPTPQPQPEPKPDPQPTPEP FT QHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSNNGVQ FT AQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGNYAGC FT DITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAPKTMK FT SDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWMSVLP FT PYDPNQVPEQEEEQPMVDKEMDSRSPVEPPSPTSDTEAERAFDLREEELTRARLEYEAA FT TESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPVIAEK FT LREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEYTRIR FT KSMGLTAAKEYKASLADTW" FT CDS 2859..3446 FT /codon_start=1 FT /product="coat protein" FT /note="gp4; ORF3; translated from subgenomic RNA 1" FT /db_xref="GOA:Q5UUX1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5UUX1" FT /protein_id="AAV52263.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGRSLHFNMTPK" FT CDS 2896..3360 FT /codon_start=1 FT /product="movement protein" FT /note="gp5; translated via leaky-scanning from subgenomic FT RNA 1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q80J48" FT /protein_id="AAV52264.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" FT CDS 4930..5061 FT /codon_start=1 FT /product="gp6" FT /note="translated from subgenomic RNA 2" FT /db_xref="GOA:Q80J47" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q80J47" FT /protein_id="AAV52265.1" FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" XX SQ Sequence 5673 BP; 1707 A; 1377 C; 1348 G; 1241 T; 0 other; tagtgaagat tgaccatctc acaaaagctg ttacgtgctt gtaacacact acacactcgt 60 tttgtaatcg agaagtagtt gcaagaacgg tcctctcatt gcctgactag ctgagagcca 120 tccttctatc cccaccgcca ccatgttctt cgaaatactc ataggagcta gtgccaaggc 180 ggtcaaagat ttcatcagcc actgctactc tagactaaaa tctatatatt attctttcaa 240 acgatggctg atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaacatgtg 300 ctttgggcac atggctgaca ttgaagactt cgaggctgaa ctcgctgaag agttcgctga 360 gagggaggat gaggtggaag aggccaggag cctcttgaaa ctgctggtcg cccaaaaatc 420 taaatccggg gtgaccgagg cttggaacga cttctttttg aagtcgaggg gtggtgttta 480 cgcaccgctc tcttgtgagc ccaccaagca ggaactagag gtcaagagcg agaagctcga 540 gaggcttcta gacgaacagc accaattcga ggtgcgagcg gccaagaaat acatcaaaga 600 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agccgtctca gattggtgaa 660 ggatgtcaag gatgaggcga aggacaacgc caaagccgct gcaaagattg gagcggaaat 720 gttcgccccc gttgacgtgc aggacctcta cagctttaca gaggtcaaga aggtggagac 780 cggcctcaca aaggaggtcg taaaagaagt gaacggcgag gaaacgaaac gcctcgaacc 840 catcttggaa gaggtgcgat ccatcaagga cattgccgaa gctagggacg ccgcctccac 900 ttggataaca gagacagtca aattgaaaaa ttcaaccctt aacgctgatg aactgtctct 960 cgccaccatc gcccgctacg ttgaaaatgt aggggacaaa ttcaaactcg acattgccag 1020 caagacatat ctaaagcaat gcgcaacgat gtctgtacca attccaacca ccaaggacat 1080 caaaatgaag atggtgttgc agagtcctga agcacgtgcc aggcgggaac gcatggacgt 1140 gcttgactct gtgggttttt agaggggctc tgtaccgcct ctggttttga gagcccattt 1200 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg taaggttagt 1260 agcaatatta gataccttag ccaaacccac ttaggtttag tatataaggc accaaatgcc 1320 tccctgcaca acgcgcttgt ggcagtggag agaagagttt ttacagtagg aaaggggaac 1380 gaacctattt accccccccg ccctgagcac gacattttca ctgatacaat ggactacttt 1440 ggtaagtcca taatcgacga ggtgggatac tgtaaaacat acccagcgca actcctggct 1500 aacagctata gcgcaggaaa aagggccatg tatcacaaag ccattgcatc cctgaaaaca 1560 accccctatc agcagagaga tgctaatgtg caagctttcc tcaagaagga aaaacattgg 1620 atgaccaagg acatcgctcc ccgattgata tgcccccgca gcaagcggta caacattatc 1680 ctaggaactc gtttgaaatt caacgagaag aagatcatgc acgccatcga tagtgtgttt 1740 ggatccccca ctgtgctttc tggctatgat aacttcaagc aaggaagaat catagccaag 1800 aagtggcaaa agtttgcatg ccccgtcgct atcggcgtgg atgctagccg ctttgaccaa 1860 cacgtgtcag agcaggcgct taagtgggaa cacgggatat acaatggaat cttcggtgac 1920 agcgaattgg ctcttgcact tgaacaccaa atatccaaca acatcaaaat gttcgtagag 1980 gacaaaatgc ttaggttcaa ggttagaggc catagaatgt ccggtgacat taataccagc 2040 atgggaaaca agctaataat gtgcggcatg atgcacgcat atttcaagaa gctgggtgtt 2100 gaagcagaac tatgtaacaa tggagacgac tgtgtcatca tcacggacag agccaatgag 2160 aagctctttg atggcatgta cgaccacttt ctccagtatg gtttcaacat ggtgaccgaa 2220 aaaccagttt acgaactgga acaattggag ttttgccagt caaaaccggt ctctattaat 2280 ggaaaataca gaatggtcag aaggcccgat agcataggca aagacagcac aacactactg 2340 agcatgctca accaatccga cgtcaaaagt tacatgtcgg ctgtggctca gtgtggtttg 2400 gtgcttaacg ctggagtacc catactcgaa agtttctata aatgcctata tagaagctct 2460 gggtacaaga aagtgagtga tgaattcatc aaaaacgtca tttcgtatgg aacagatgag 2520 agactacaag gtagacgtac ctttgaagac acacctatca ctaatcatag taggatgtcc 2580 tactgggaat cattcggagt tgaccctaag atacaacaaa ttgtcgagcg gtactacgac 2640 aatcttacgg tgagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca 2700 atactacttt ccataccgga aaaccactca caaaacgact attaattacc aaattttagc 2760 tgggtttgga atagggttta tagtttctat tccctgtaca ttagctctct cctactttat 2820 ctacaataaa gtttctgaca ccactaggga ggtggtgaat gaattcagta ggccgtagaa 2880 ataaccgcag gagaaatggc ccaaggagag caaggcgcgc tggcgcagtt cggagaatgg 2940 ttgtggtcca acccaatcga gccggaccaa aacgaagaac tcgtcgacgc acaagaggag 3000 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta ttctcagtca 3060 acgaccttaa ggccaactcc tcagggacaa tcaagttcgg tcccgacctt tcgcaatgcc 3120 cagcgctttc aggtggaata ctcaagtcct accaccgtta caagatcaca aacgtcaagg 3180 ttgagtttaa gtcacacgcg tccgcctcta cagtcggcgc aatgtttatt gaactcgaca 3240 cttcgtgctc acaatcaacc ttgggtagct acattaactc attcaccctc tcaaaatcag 3300 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag agcacggtga 3360 atcaatttta tatgctatac aaggcaaatg gtagtacatc tgataccgcc ggccgttcac 3420 tccacttcaa catgactccc aaataggtag actcctcaac accagagcct acaccccaac 3480 cccaaccaga gcccaaacct gatccgcagc caacaccaga gcctcaacac aaacggtttt 3540 tcgagtacgt aggaacgccc tatgttatca tacaaactag ggagagttcg gatagcattg 3600 ccgtcaagtc aatgaatgat caatcctttc agtacatcga aaacgaaact tctgagcaaa 3660 gaaccgttca ggcatggtgg acctccaaca acggcgtcca agcgcaagca gcatttgtat 3720 ttcctatacc cgctggagag tatagtgtca atatttcttg tgaagggcta caatcagtgg 3780 accacattgg aggaaaccga gacggatatt ggataggctt aatagcctac caaaatcaaa 3840 gcggggatta ttggggcgtg ggcaactatg ctggctgtga tataaccaat cttctaggaa 3900 caaacacttg gcgtccaggc catgaagatt tggaattaaa cggctgcaaa ttcactaatg 3960 gacagatagt tgaaagagac gctgtgatat ccttccatgt taaagctcag ggtgctgacc 4020 ccaagtttta cctcatggca cccaagacca tgaagtctga caagtacaac tatgtcgtgt 4080 cttatggagg ttacacagac aaaagaatgg aatttggatc catatctgtc actgtggatg 4140 aatctgatgt tgaggcacag cgctacaaca ggcacactag cacggttagg aaaacagaaa 4200 accgagatta tgggtggatg agtgttctac caccctatga tcctaaccaa gtgccggagc 4260 aagaggaaga acaaccaatg gtcgacaagg agatggattc aagatctcct gtcgaacccc 4320 cttccccaac ctccgacact gaggctgaaa gagcctttga cttgagagag gaagaactta 4380 cgagggccag acttgaatac gaggcagcca ctgaatccat acctgatgct gccccggaca 4440 ttttaccctc aaaatctgaa atgagcagta gaccaataga ccatgatgga aggtctttgc 4500 caaaacctca gtcaaaagaa gtcctcggca cttaccaagg ccagaacatc acaccagatg 4560 atgttcctcc tgtcatagct gaaaaattgc gtgaagtgaa cagagcacca tctactctgc 4620 tttacgacag gcagccaaaa acaccaaaaa gctttctttc ccgtttcgta gaaaccaata 4680 aaactagctt ggcttcccct ggttcacagt cttccacgtc aggaatgaca agagaacaag 4740 cctcagaata caccaggatt aggaagtcaa tgggcctcac ggcagctaag gagtacaaag 4800 ccagtttagc tgacacatgg tgaagatcaa caccactcgc aaattcggat cctgggaaac 4860 aggcagaact tcggttcgta agctcgggta aactagtcct ttaccgtcgt atcgtacttt 4920 gtgtggccga tggatgatct acatgtgata gcagtctgtg tgctgtccac gacagtgttc 4980 gcagcggcag tactcacaat tagcgcaatt gctagtattt gcggcagtgc atgtgcaact 5040 gccaacattc aaagggttta atctgtgata caacccacca aaatacacgg ggaacaacag 5100 gttcagcgag ggggctaacg acccccagca attggctggt tctgggagac ttaaataacc 5160 tcctatagaa cgaagtggaa tccccccact gatcaaattg ggaagcatgc ttctgtgcta 5220 tacactgccc cagaggacac tgggtaaaca aatctaacca cccaactcaa tgaaatgaga 5280 gcggaggagg cggggtgggt gacctcgtga tgtgcacccg atcgtcagga ttgaagacgt 5340 taaaactcaa cgacctagtg caagtcgtta aactgactcg ggtggataca ccacacccgg 5400 cctaacttgg aggcataccc acgatacgaa acgtgggttt cttggagcca ctacctgtga 5460 tgcaaggtag ggtatgggtc ttagcaagcc ctgcgccagg aaatggacat aaaccatagc 5520 aatcccccaa gtcatctcgg caaaccacag gtgaaccgtg ccacaggcct gactaccgaa 5580 aggaaaatca gtatccaaca cagcaatgtg ttgggggtca cacccttcgg ggtactctta 5640 acgctgacac tcgaaagagc agttcggcaa ccc 5673 //