ID AY610953; SV 1; linear; genomic RNA; STD; VRL; 5685 BP. XX AC AY610953; XX DT 09-NOV-2004 (Rel. 81, Created) DT 11-JAN-2006 (Rel. 86, Last updated, Version 2) XX DE Barley yellow dwarf virus - GAV isolate 30W, complete genome. XX KW . XX OS Barley yellow dwarf virus GAV OC Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus. XX RN [1] RP 1-5685 RA Du Z., Wang D.; RT "Three newly sequenced barley yellow dwarf virus-GAV isolates: potential RT evolutionary recombinants of luteovirus PAV and MAV"; RL Unpublished. XX RN [2] RP 1-5685 RA Du Z., Wang D., Jin Z., Wang X., Zhou G.; RT "Sequence variations among barley yellow dwarf virus-GAV isolates in the RT variable 3' regions"; RL Unpublished. XX RN [3] RP 1-5685 RA Du Z., Wang D., Jin Z., Wang X., Zhou G.; RT ; RL Submitted (28-APR-2004) to the INSDC. RL Chinese Academy of Sciences, Institute of Genetics and Developmental RL Biology, Datun Road No.5, Beijing, Beijing 100101, P.R.China XX DR MD5; 475ece7d8da4b3250e11340685330de1. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5685 FT /organism="Barley yellow dwarf virus GAV" FT /isolate="30W" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:224578" FT CDS join(143..1159,1159..2745) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase fusion protein" FT /note="produced by low-frequency -1 frameshift" FT /db_xref="GOA:Q5UUX8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5UUX8" FT /protein_id="AAV52255.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMANIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDEPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGTMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGRRTFEDTPITNHSRM FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY" FT CDS 143..1162 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="gp2; ORF1" FT /db_xref="GOA:Q5UUX7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5UUX7" FT /protein_id="AAV52256.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMANIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2859..4835 FT /codon_start=1 FT /transl_except=(pos:3456..3458,aa:OTHER) FT /product="aphid transmission protein" FT /note="gp3; produced by readthrough" FT /db_xref="GOA:Q5UUX6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q5UUX6" FT /protein_id="AAV52260.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQPTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKPDPQP FT TPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSN FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN FT YAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP FT KTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWM FT SVLPPYDPNQVPEQEEEQPMVDKEMDSRSPVEPPSPTSDTEAERAFDLREEELTRARLE FT YEAATESIPDAAPDVLPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPV FT IAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY FT TRIRKSMGLTAAKEYKASLADTW" FT CDS 2859..3458 FT /codon_start=1 FT /product="coat protein" FT /note="gp4" FT /db_xref="GOA:Q5UUX5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5UUX5" FT /protein_id="AAV52257.1" FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT FT NVKVEFKSHASASTVGAMFIELDTSCSQPTLGSYINSFTLSKSATKNFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" FT CDS 2896..3360 FT /codon_start=1 FT /product="movement protein" FT /note="gp5; translated via leaky-scanning from subgenomic FT RNA 1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q80J48" FT /protein_id="AAV52258.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR" FT CDS 4942..5073 FT /codon_start=1 FT /product="gp6" FT /note="translated from subgenomic RNA 2" FT /db_xref="GOA:Q80J47" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q80J47" FT /protein_id="AAV52259.1" FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV" XX SQ Sequence 5685 BP; 1711 A; 1376 C; 1352 G; 1246 T; 0 other; tagtgaagat tgaccatctc acaaaagctg ttacgtgctt gtaacacact acacactcgt 60 tttgtaatcg agaagtagtt gcaagaacgg tcctctcatt gcctgactag ctgagagcca 120 tccttctatc cccaccgcca ccatgttctt tgaaatactt ataggagcta gtgccaaggc 180 ggtcaaagat ttcatcagcc actgctactc tagactgaaa tctatatatt attctttcaa 240 acgatggctg atggaaatat ctgggcaatt taaggcccat gacgcctttg tcaacatgtg 300 ctttgggcac atggctaaca ttgaagactt cgaggctgaa ctcgctgaag agttcgccga 360 gagggaggat gaggtggaag aggccaggag cctcttgaaa ctgctggtcg cccaaaaatc 420 taaatccggg gtgaccgagg cttggaacga cttctttttg aagtcgaggg gtggtgttta 480 cgcaccgctc tcttgtgagc ccaccaagca ggaactagaa gtcaagagcg agaagctcga 540 gaggcttcta gacgaacagc accaattcga ggtgcgggcg gccaagaaat acatcaaaga 600 aaagggccgc ggcttcatca actgctggaa cgacttgcgt agccgtctca gattggtgaa 660 ggatgtcaag gatgaggcga aggacaacgc caaagccgct gcaaagattg gagcggaaat 720 gttcgccccc gttgacgtgc aggacctcta cagctttaca gaggtcaaga aggtggagac 780 cggcctcaca aaggaggtcg taaaagaagt gaacggtgaa gaaacgaaac gcctcgaacc 840 catcttggaa gaggtgcgat ccatcaagga caccgcagaa gctagggacg ccgcctccac 900 ttggataaca gagacagtca aattgaaaaa ttcaaccctt aacgccgatg aactgtctct 960 cgccaccatc gcccgctacg ttgaaaatgt aggggacaaa ttcaaactcg acattgccag 1020 caagacatat ctaaagcaat gcgcaacgat gtctgtacca attccaacca ccaaggacat 1080 caaaatgaag atggtgttgc agagtcctga agcacgtgcc aggcgggaac gcatggacgt 1140 gcttgactct gtgggttttt agaggggctc tgtaccgcct ctggttttga gagcccattt 1200 ccaattctcg ggctgccaga gattgcggtc acagacggag cccggctccg taaggttagt 1260 agcaatatta gataccttag ccaaacccac ttaggtttag tatataaggc accaaatgcc 1320 tccctgcaca acgcgcttgt ggcagtggag agaagagttt ttacagtagg aaagggggac 1380 gaacctattt accccccccg ccctgagcac gacattttca ctgatacaat ggactacttt 1440 ggtaagtcca taatcgacga ggtgggatac tgtaaaacat acccagcgca actcctggct 1500 aacagctata gcgcaggaaa aagggccatg tatcacaaag ccattgcatc cctgaaaaca 1560 accccctatc agcagagaga tgctaatgtg caagctttcc tcaagaagga aaaacattgg 1620 atgaccaagg acatcgctcc ccgattgata tgcccccgca gcaagcggta caacattatc 1680 ctaggaactc gtttgaaatt caacgagaag aagatcatgc acgccatcga tagtgtgttt 1740 ggatccccca ctgtgctttc tggctatgat aacttcaagc aaggaagaat catagccaag 1800 aagtggcaaa agtttgcatg ccccgtcgct atcggcgtgg atgctagccg ctttgaccaa 1860 cacgtgtcag agcaggcgct taagtgggaa cacgggatat acaatggaat cttcggtgac 1920 agcgaattgg ctcttgcact tgaacaccaa atatccaaca acatcaaaat gttcgtagag 1980 gacaaaatgc ttaggttcaa ggttagaggc catagaatgt ccggtgacat taacaccagc 2040 atgggaaaca agctaataat gtgcggcacg atgcacgcat atttcaagaa gctgggtgtt 2100 gaagcagaac tatgcaacaa tggagacgac tgtgtcatca tcactgacag agccaatgag 2160 aagctctttg atggcatgta cgatcacttt ctccagtatg gtttcaacat ggtgaccgaa 2220 aaaccagttt acgaactgga acaattggag ttttgccagt caaaaccggt ctctattaat 2280 ggaaaataca gaatggtcag aaggcccgat agcataggca aagacagcac aacactactg 2340 agcatgctca accaatccga cgtcaaaagt tacatgtcgg ctgtggctca gtgtggtttg 2400 gtgcttaacg ctggagtacc catactcgaa agtttctata aatgcctata tagaagctct 2460 gggtacaaga aagtgagtga tgaattcatc aaaaacgtca tttcgtatgg aacagatgag 2520 agactacaag gtagacgtac ctttgaagac acacctatca ctaatcatag taggatgtcc 2580 tactgggaat cattcggagt tgaccctaag atacaacaaa ttgtcgagcg gtactacgac 2640 aatcttacgg tgagtgccca actccagagc gtgaaggtga ctactccaca tctgcaatca 2700 atactacttt ccataccgga aaaccactca caaaacgact attaattacc aaattttagc 2760 tgggtttgga atagggttta tagtttctat tccctgtaca ttagctctct cctactttat 2820 ctacaataaa gtttctgaca ccactaggga ggtggtgaat gaattcagta ggccgtagaa 2880 ataaccgcag gagaaatggc ccaaggagag caaggcgcgc tggcgcagtt cggagaatgg 2940 ttgtggtcca acccaatcga gccggaccaa aacgaagaac tcgtcgacgc acaagaggag 3000 gaggggcaaa tcttatatct ggaccagcag gcaggactga ggtattcgta ttctcagtca 3060 acgaccttaa ggccaactcc tcagggacaa tcaagttcgg tcccgacctt tcgcaatgcc 3120 cagcgctttc aggtggaata ctcaagtcct accaccgtta caagatcaca aacgtcaagg 3180 ttgagtttaa gtcacacgcg tccgcctcta cagtcggcgc aatgtttatt gaactcgaca 3240 cttcgtgctc acaaccaacc ttgggtagct acattaactc attcaccctc tcaaaatcag 3300 caaccaaaaa cttcaccgcc caacagattg acgggaagga attcagggag agcacggtga 3360 atcaatttta tatgctatac aaggcaaatg gtagtacatc tgataccgcc gggcaattca 3420 tcattacaat acgcgttgcc aacatgactc ccaaataggt agactcctca acaccagagc 3480 ctacacccca accccaacca gaacccaaac ctgatccgca gccaacacca gagcctcaac 3540 acaaacggtt tttcgagtac gtaggaacgc cctatgttat catacaaact agggagagtt 3600 cggatagcat tgccgtcaag tcaatgaatg atcaatcctt tcagtacatc gaaaacgaaa 3660 cttctgagca aagaaccgtt caggcatggt ggacctccaa caatggcgtc caagcgcaag 3720 cagcatttgt atttcctata cccgctggag agtatagtgt taacatttct tgtgaaggtt 3780 tacaatcagt ggaccacatt ggaggaaacc gagacggata ttggataggc ttaatagcct 3840 accaaaatca aagcggggat tattggggcg tgggcaacta tgctggctgt gatataacca 3900 atcttctagg aacaaacact tggcgtccag gccatgaaga tttggaatta aacggctgca 3960 aattcactaa tggacagata gttgaaagag acgctgtgat atccttccat gttaaagctc 4020 agggtgctga ccccaagttt tacctcatgg cacccaagac tatgaagtct gacaagtaca 4080 actatgtcgt gtcttatggg ggttacacag acaaaagaat ggaatttgga tccatatctg 4140 tcactgtgga tgaatctgat gttgaggcac agcgctacaa caggcacact agcacggtta 4200 ggaaaacaga aaaccgagat tatgggtgga tgagtgttct accaccctat gatcctaacc 4260 aagtgccgga gcaggaggaa gaacaaccaa tggtcgacaa ggagatggat tcaagatctc 4320 ctgtcgaacc cccttcccca acctccgata ctgaggctga aagagccttt gacttgagag 4380 aggaagaact tacgagggcc agacttgaat acgaggcagc cactgaatcc atacctgatg 4440 ctgccccgga cgttttaccc tcaaaatctg aaatgagcag tagaccaata gaccatgatg 4500 gaaggtcttt accaaaacct cagtcaaaag aagtcctcgg cacataccaa ggccagaaca 4560 tcacaccaga tgatgttcct cctgtcatag ctgaaaaatt gcgtgaagtg aacagagcac 4620 catctactct gctttacgac aggcagccaa aaacaccaaa aagctttctt tcccgtttcg 4680 tagaaaccaa taaaactagc ttggcttccc ctggttcaca gtcttccacg tcaggaatga 4740 caagagaaca agcctcagaa tacaccagga ttaggaagtc aatgggcctc acggcagcta 4800 aggagtacaa agccagttta gctgacacat ggtgaagatc aacaccactc gcaaattcgg 4860 atcctgggaa acaggcagaa cttcggttcg taagctcggg taaactagtc ctttaccgtc 4920 gtatcgtact ttgtgtggcc gatggatgat ctacatgtga tagcagtctg tgtgctgtcc 4980 acgacagtgt tcgcagcggc agtactcaca attagcgcaa ttgctagtat ttgcggcagt 5040 gcatgtgcga ctgccaacat tcaaagggtt taatctgtga tacaacccac caaaatacac 5100 ggggaacaac aggttcagcg agggggctaa cgacccccag caattggctg gttctgggag 5160 acttaaataa cctcctatag aacgaagtgg atccccccca ctgatcaaat tgggaagcat 5220 gcttctgtgc tgtacactgc cccagaggac actgggtaaa caaatctaac cacccaactc 5280 aatgaaatga gagcggagga ggcggggtgg gtgacctcgt gatgtgcacc cgatcgtcag 5340 gattgaagac gttaaaactc aacgacctag tgcaagtcgt taaactgact cgggtggata 5400 caccacaccc ggcctaactt ggaggcatac ccacgatacg aaacgtgggt ttcttggagc 5460 cactacctgt gatgcaaggt agggtatggg tcttagcaag ccctgcgcca ggaaatggac 5520 ataaaccata gcaatccccc aagtcatctc ggtaaaccac aggtgaaccg tgccacaggc 5580 ctgactaccg aaaggaaaat cagtatccaa cacagcaatg tgttgggggt cacacccttc 5640 ggggtactct taacgctgac actcgaaaga gcagttcggc aaccc 5685 //