ID   AY609385; SV 1; linear; genomic RNA; STD; VRL; 1800 BP.
XX
AC   AY609385;
XX
DT   15-MAY-2004 (Rel. 79, Created)
DT   16-MAY-2004 (Rel. 79, Last updated, Version 2)
XX
DE   Indian cardamom mosaic virus isolate Margodu polyprotein gene, partial cds.
XX
KW   .
XX
OS   Indian cardamom mosaic virus
OC   Viruses; Riboviria; Potyviridae; Macluravirus.
XX
RN   [1]
RP   1-1800
RA   Smitha R., Krishna Reddy M.;
RT   "Genetic diversity of Indian cardamom mosaic virus";
RL   Unpublished.
XX
RN   [2]
RP   1-1800
RA   Smitha R., Krishna Reddy M.;
RT   ;
RL   Submitted (28-APR-2004) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
DR   MD5; a7a2771d0793e9d8b0e1f7c9a0b63503.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1800
FT                   /organism="Indian cardamom mosaic virus"
FT                   /isolate="Margodu"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Margodu, Kodagu, Karnataka"
FT                   /isolation_source="infected cardamom leaves"
FT                   /db_xref="taxon:152006"
FT   CDS             <1..1587
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="consists of NIb protein (RNA dependent RNA
FT                   polymerase) and coat protein"
FT                   /db_xref="GOA:Q6J0M7"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q6J0M7"
FT                   /protein_id="AAT10385.1"
FT                   /translation="GNNSGQPSTVVDNTLILMMSFYYAYIMKTQDFDCEHIHERMRFVC
FT                   NGDDNKFSLAPSFVKEFGGEFTTEIKQLGLTYEFDDLTDDITENPYMSLTMVRTSSGIG
FT                   FSLHPSRVVAIVQWIKKGDIIQATQAAFAAMIEAYNDPWLFSILHLYLVWLLIEYKDAL
FT                   NFARVNGIFGVVYFDPCQVHALHYGTPTVNEFGECESDSCIDDDDFEAIEYCSQQFQMD
FT                   LVGTPTAPRQGNTTVPSTSSGTTGVTPPGGSGTRAAPLAPMTGQTSVVSPPRPVEEPDT
FT                   QLQESTLGGGDDDADIQWRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQ
FT                   LATTLQFEKWAEDVRKSLGTPNEEDFQIYLTSWCLWCANNGTSSEVDVNQNMEIHSGGK
FT                   YSTIPIAIFVEPAVQNGGLRKIMRHLSDITSQILAKGGKMTAWGTKGGYTQIAMIPYAF
FT                   DFCVQTNGMPETVREQLNQGKAAAIGSGYQRVMLLDGKVQRSKTSYERHVDTDVDEFEH
FT                   GSMSEPRATLY"
FT   3'UTR           1588..1800
FT   regulatory      1796..1800
FT                   /regulatory_class="polyA_signal_sequence"
XX
SQ   Sequence 1800 BP; 543 A; 359 C; 424 G; 474 T; 0 other;
     ggcaacaata gtggtcaacc aagtacagta gttgacaaca ccttaatttt gatgatgtct        60
     ttttattatg cttacatcat gaagacacaa gatttcgact gtgagcacat acatgaacgg       120
     atgagattcg tctgtaatgg agacgacaac aaattctcac tggccccaag cttcgttaag       180
     gaatttgggg gagagttcac aactgaaatt aagcaacttg gtctgacgta tgaattcgat       240
     gatcttactg atgatataac ggagaatcca tacatgagtt tgacaatggt gcggacgtcg       300
     agtggtattg gtttttctct gcatccatct agggtcgttg caattgttca gtggattaag       360
     aagggagata ttatccaagc aacacaagca gcatttgcag caatgattga ggcatataat       420
     gatccatggc ttttcagtat tttgcatctt tacctagtgt ggttgctcat tgagtataaa       480
     gatgctttga actttgcgag ggtcaatggc atctttggag tcgtttactt tgatccatgc       540
     caagttcatg cgctacacta tggtactcca acagtcaatg aatttgggga atgtgagagc       600
     gacagttgca ttgacgacga cgactttgag gctatcgaat attgttctca gcagtttcaa       660
     atggatttag taggcacgcc aacagcacca agacaaggca acacaacagt gccatcaact       720
     tcatctggca cgactggtgt caccccacct ggtggtagtg gaacacgcgc agcaccgctt       780
     gcaccaatga caggacagac aagtgttgtc agtccaccac gaccagtaga agaacctgac       840
     actcaattgc aagaatcaac acttggtggt ggcgatgatg acgcagacat tcaatggagg       900
     atacccccaa caccgagaag gctgagccac tttaacaacc cacgagtcaa aggaaagaga       960
     atctggaata ggaaaattat caacagcatt gcaaaagagc aattcacaca atcatcacag      1020
     ttggcaacca ccttgcaatt tgaaaagtgg gctgaggatg ttcggaaaag tctcggtaca      1080
     cccaatgaag aagattttca aatttatctc acatcatggt gtttatggtg tgccaataat      1140
     ggcacatcat cagaggttga tgtcaaccag aacatggaga ttcattcagg tgggaagtac      1200
     tcgacaatac caattgccat ctttgttgag ccagcagtgc aaaatggtgg gcttcggaaa      1260
     attatgagac acctcagcga cataacatca caaatactgg ccaaaggtgg aaaaatgaca      1320
     gcatggggaa cgaagggggg ttacacgcag attgcaatga taccttatgc ttttgatttt      1380
     tgtgttcaaa caaatgggat gcccgaaaca gttcgtgagc agctaaatca agggaaggct      1440
     gctgcaattg gttcaggcta ccagcgagtc atgcttctgg atgggaaggt gcagcgaagc      1500
     aaaacaagtt acgaacggca cgttgacact gatgtcgacg aatttgaaca cggctctatg      1560
     agtgagccac gagcaactct atattgaaca tacattgatg tcaatttagt gtgttttaaa      1620
     gtttatttct agataaatgt ttaataatta tcacttgcta catctatagg ttcaatggga      1680
     gtttttgtgg gttttcttcc aacgcctagt aaccctcaat gtagcgctta aggctgctct      1740
     ggatgagcgc ctggctgcac gtttgtgcag tttatcctgt taccatagaa ggtttaaaaa      1800
//