ID AY603425; SV 1; linear; mRNA; STD; VRL; 7476 BP. XX AC AY603425; XX DT 23-SEP-2004 (Rel. 81, Created) DT 22-JAN-2006 (Rel. 86, Last updated, Version 3) XX DE Sapovirus C12, complete genome. XX KW . XX OS Sapovirus C12 OC Viruses; Riboviria; Caliciviridae; Sapovirus. XX RN [1] RP 1-7476 RX PUBMED; 15504283. RA Katayama K., Miyoshi T., Uchino K., Oka T., Tanaka T., Takeda N., RA Hansman G.S.; RT "Novel recombinant sapovirus"; RL Emerg. Infect. Dis. 10(10):1874-1876(2004). XX RN [2] RP 1-7476 RX DOI; 10.1007/s00705-004-0406-8. RX PUBMED; 15449145. RA Hansman G.S., Natori K., Oka T., Ogawa S., Tanaka K., Nagata N., RA Ushijima H., Takeda N., Katayama K.; RT "Cross-reactivity among sapovirus recombinant capsid proteins"; RL Arch. Virol. 150(1):21-36(2005). XX RN [3] RP 1-7476 RA Hansman G.S.; RT ; RL Submitted (21-APR-2004) to the INSDC. RL Developmental Medical Sciences, Tokyo University, 7-3-1 Hongo, Bunkyo ku, RL Tokyo 133-0033, Japan XX DR MD5; 60c44c3f6de492bb52aa04ebefe0e257. DR EuropePMC; PMC1143638; 15919882. DR EuropePMC; PMC1317165; 16333083. DR EuropePMC; PMC1865854; 17267629. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2600344; 18598655. DR EuropePMC; PMC2725984; 17553282. DR EuropePMC; PMC2738451; 18044044. DR EuropePMC; PMC2744225; 19624925. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2815582; 19940055. DR EuropePMC; PMC2851512; 18258001. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3323275; 15504283. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3433708; 22973264. DR EuropePMC; PMC4498750; 26161646. DR EuropePMC; PMC5035092; 27661997. DR EuropePMC; PMC553994; 15727685. DR EuropePMC; PMC5864949; 29567738. XX FH Key Location/Qualifiers FH FT source 1..7476 FT /organism="Sapovirus C12" FT /strain="C12" FT /mol_type="mRNA" FT /country="Japan" FT /db_xref="taxon:290314" FT CDS 13..6858 FT /codon_start=1 FT /product="ORF1 protein" FT /db_xref="GOA:Q64HX2" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q64HX2" FT /protein_id="AAT99463.1" FT /translation="MASKPFYPIEFNPRVELQVLRSAHLRVGGREQMFETINDLNDHVR FT GVVAGLWCKHLHRSLATAPTFTEEGLLDSFLSKPPVDINPDTTFRELFGVDPHEQFPLS FT IHDLAKLQGELVDAARNPGHVLRRHYSTDSLTALINKITKYVPVHATLQEMQARRAFER FT ERAELFKELPHADLDVSRQQKSYFYAMWRQVVKKGKEFFIPLVKCTSWRKKFTEPAEIV FT RQVLVHFCEGMRSQFSTNVNYINLSLIAKLRPTVLTMILQQHKNTYRGWLATVTALVEV FT YSNLFQDMRDTAVSAVSAITLVFETIKDFIVNVIDLVKSTFQSQGPTPCGWAAIVAGAV FT LILMKLSGCSNTTSYWHRLLKVCGGVTTIAAAARAVVWVRDIIAEADGKARLKKYMART FT AALLELAASRDVTGTDELKXLLDCFTQLIEEGTELIQEFGTSPLAGLTRSYVSELESTA FT NSIRSTILLDTPRKAPVAIILTGPPGIGKTRLAQHLAAGFGKVSNFSVTLDHHDSYTGN FT EVAIWDEFDVDTQGKFVETMIGIVNTAPYPLNCDRVENKGKVFTSDYIICTSNYPTSVL FT PDNPRAGAFYRRVTTIDVSSPTIEDWKKKNPGKKPPPDLYKNDFTHLRLSIRPFLGYNP FT EGDTLDGVRVKPVLTSVDGLSRLMETKFKEQGNEHRNLWITCPRDLVAPATSGLKAYMA FT ANRALAQVFQEPSSQDIGETCTSRVYVSCNNPPPTYSGRVVKITAINPWDASLANSMLS FT MFETTSHIPASTQREIMYRVWDPLVHLQTREPNTQMLPYINRVVPVSSAFDFIRGLRHH FT LGLCSVKGMWRAYQGWNSSSSILEFLSKHMADVTFPHNPECTVFRAPDGDVIFYTFGSY FT ACFVSPARVPFVGDPPKTVHSNITRNMTWAETLRLLAETITESLVHFGPFLLMMHNVSY FT LATRSGREEEAKGKTKHGRGAKHARRGGVSLSDDEYDEWRDLVRDWRQDMTVGEFVELR FT ERYALGMDSEDVQRYRAWLELRAMRMGAGAYQHATIIGRGGIQDTIVRTQPMRAPRAPR FT NQGYDEEAPTPIVTFTSGGDHIGYGCHMGNGVVVTVTHVASASDQVEGQEFTIRKTEGE FT TTWVNTNLGHLPHYQIGDGAPVYYSARLHPVTTLAEGTYETPNITVQGYHLRILNGYPT FT KRGDCGTPYFDSCRRLVGLHAATSTNGETKLAQRVTKTSKVENAFAWKGLAVVRGPDCG FT GMPTGTRYHRSPAWPNPVEGETHAPAPFGSGDERYKFSQVEMLVNGLKPYSEPTPGVPP FT ALLQRAATHTRTYLETIIGTHRSPNLSFNEACSLLEKSTSCGPFVAGQKGDYWDEDKQC FT YTGVLAEHLAKAWDAANRGVAPQNAYKLALKDELRPIEKNAQGKRRLLWGCDAGATLVA FT TAAFKGVATRLQAVAPMTPVGVGINMDSYQVEVLNESLKGGVLYCLDYSKWDSTQHPAV FT TAASLGILERLSEATPITTSAVELLSSPARGHLNDIVFITKSGLPSGMPFTSVINSLNH FT MTYFAAAVLKAYEQHGAPYTGNVFQVETVHTYGDDCLYSVCPATASIFQTVLANLTSFG FT LKPTAADKSETIAPTHTPVFLKRTLTCTPRGVRGLLDITSIKRQFLWIKANRTVDINSP FT PAYDRDARSIQLENALAYASQHGHTVFEEVAELARHTAKAEGLVLTNVNYDQALATYES FT WFIGGTGLVQGSPSEETTKLVFEMEGVPRPEGPKANSNENVPLASPQDTIGPNAALLLP FT TQIETPNGAAQRVEMAAATGAVSNNVPMCVRECFASVTTLPWTTRQASNTFLGAIHLGP FT RINPYTAHLSAMFAGWGGSFQIRVTLSGSGLYAGRAVVAVLPPGVNPANVQNPGVFPHA FT FIDARTVDPILINLPDIRAVDYHRVDGDEQTATVGLWVAQPLINPFQTGSISTCWLTFE FT TRPGPDFDFCLLKAPEQEMDNGISPANLLPRRLGRSRGNRLGGRVVGLVVVAVAEQVNH FT HFAANSTTLGWSTLPIEPIAGAISWYQNTTPGISTRGLLSAEGKGIIFPNIVNHWTDVA FT LSSKTSGRTTVPTDQANLNQCPGASGPVVMFQNNGDVNETSANNCVLTAASHDFVNLSS FT NFDAAGMWVWLPWTTTKPDATINRNVYITPTWINGDPSRPIHGKCTNMVGTNFQFGGTG FT TNNIMLWQEQHFTSFPGAAEVYCSQLESTAEMFQNNVVNIPANQMAVFNVETAGNTFQI FT AIMPNGYCVTNAAVGTHQLLDYETSFRFVGLFPQSTSLQGPNGNAGRAVRFLE" FT CDS 5173..6858 FT /codon_start=1 FT /product="VP1" FT /note="capsid protein" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q64HX1" FT /protein_id="AAT99464.1" FT /translation="MEGVPRPEGPKANSNENVPLASPQDTIGPNAALLLPTQIETPNGA FT AQRVEMAAATGAVSNNVPMCVRECFASVTTLPWTTRQASNTFLGAIHLGPRINPYTAHL FT SAMFAGWGGSFQIRVTLSGSGLYAGRAVVAVLPPGVNPANVQNPGVFPHAFIDARTVDP FT ILINLPDIRAVDYHRVDGDEQTATVGLWVAQPLINPFQTGSISTCWLTFETRPGPDFDF FT CLLKAPEQEMDNGISPANLLPRRLGRSRGNRLGGRVVGLVVVAVAEQVNHHFAANSTTL FT GWSTLPIEPIAGAISWYQNTTPGISTRGLLSAEGKGIIFPNIVNHWTDVALSSKTSGRT FT TVPTDQANLNQCPGASGPVVMFQNNGDVNETSANNCVLTAASHDFVNLSSNFDAAGMWV FT WLPWTTTKPDATINRNVYITPTWINGDPSRPIHGKCTNMVGTNFQFGGTGTNNIMLWQE FT QHFTSFPGAAEVYCSQLESTAEMFQNNVVNIPANQMAVFNVETAGNTFQIAIMPNGYCV FT TNAAVGTHQLLDYETSFRFVGLFPQSTSLQGPNGNAGRAVRFLE" FT CDS 6858..7358 FT /codon_start=1 FT /product="ORF2 protein" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/TrEMBL:Q64HX0" FT /protein_id="AAT99465.1" FT /translation="MSWFTGAALAAGSLVDMAGTVSSIVAQHRQIDLMAQANQIQRDWV FT NKQEALMRRGQDISRDLAVNGTAQRVESLVGAGFTPVDARRLAGSTETVQYGLLDRPIL FT QREVLAGISETHHLQSMQASLSAFKKGSSYGAPPAPVGFANPNFQPAPPRVNLGFRPPS FT TNV" XX SQ Sequence 7476 BP; 1854 A; 2006 C; 1861 G; 1754 T; 1 other; gtgattggtt ggatggcttc caagccattc tacccaatag agttcaaccc aagggttgag 60 cttcaagtgc tccgatcggc ccacctcagg gtgggtggtc gtgagcaaat gtttgaaacc 120 atcaatgatc ttaacgatca tgttaggggt gtggtggccg gactgtggtg taagcatttg 180 caccgtagtt tggctaccgc ccccacattc acagaggagg gcttactgga ctctttcctc 240 tcaaagccac ctgttgatat caatcctgac acaacgttcc gtgagctgtt tggtgttgac 300 ccccacgaac aattcccgtt gtccattcac gatttggcaa agttacaggg tgagcttgtg 360 gatgcggcac gtaacccagg ccatgtgttg cgtcgtcatt actccaccga ttcgctcacc 420 gccctaatta ataaaatcac aaaatatgtc cctgtgcatg ccacacttca agaaatgcaa 480 gcacgcagag ctttcgagcg agagcgtgcg gagctgttta aggagctgcc acatgctgac 540 ttggacgtga gccgtcaaca gaagtcgtac ttttatgcca tgtggcgtca ggtggttaag 600 aaaggcaagg agtttttcat acctttagtc aagtgtacat cttggcggaa gaagttcaca 660 gagcctgcag agattgttag acaggttttg gtccacttct gtgaagggat gaggtcacag 720 ttttccacca atgtaaacta catcaacttg tcccttatcg ccaaactccg accaacagtc 780 cttacaatga ttctccagca acacaagaat acctacagag ggtggttggc aacagtcact 840 gctctggttg aagtgtactc caatctgttc caagacatgc gtgacaccgc ggtttcggca 900 gtgtcagcca ttacgctggt gtttgaaacc atcaaggact ttatagtcaa tgtgatagac 960 ctagtcaaga gcacgtttca gtcgcaggga ccaacacctt gcggctgggc cgccattgtt 1020 gctggcgcag tgctcatctt gatgaaattg tcaggatgct ccaataccac gagctattgg 1080 caccgactcc tcaaagtgtg tggaggcgtc accaccattg ctgcagcagc ccgtgctgtc 1140 gtgtgggtgc gagacatcat agcagaagct gatggtaaag caagattgaa gaagtacatg 1200 gcccgcacgg cagccctact tgagctcgcg gcatcccgag atgtgacggg cactgatgaa 1260 ctcaaaygcc tgttggattg tttcacacag cttattgagg agggcacaga gctgatacag 1320 gagtttggta catcaccact tgctggtttg actaggtcat atgtgagtga acttgagtcc 1380 accgcaaaca gcatcaggag caccatcctc ctggacacac ctcggaaggc tccagttgca 1440 attatcctca ctggacctcc tggcataggc aaaacaaggc ttgcacagca ccttgctgca 1500 ggttttggta aggtgtcaaa tttttccgtc acgttagacc accatgactc ttataccggg 1560 aatgaggttg caatttggga cgagtttgac gttgacacac agggcaaatt tgtggagacc 1620 atgatcggca tagtcaacac cgccccttac cctcttaatt gtgaccgggt ggaaaacaaa 1680 ggcaaggtgt ttacatctga ttacattata tgcaccagca attacccgac ctctgtactt 1740 cctgacaacc cacgagcagg agctttctac cgccgggtca caacaataga tgtgtcatcc 1800 ccaaccattg aagattggaa gaagaaaaac ccaggcaaga aaccccctcc cgacttgtac 1860 aaaaatgatt tcacacacct tcgcctatct attaggccat tcttagggta caacccagag 1920 ggggacacct tagacggtgt ccgggtaaag cctgtgctta ccagtgtgga tggactgtca 1980 cgcctgatgg aaaccaagtt caaggaacag ggcaatgaac accggaacct gtggataaca 2040 tgcccgcgag atctggtggc ccccgccacg tctggtttga aagcgtacat ggccgccaat 2100 cgagcgcttg cgcaggtatt ccaggaaccg tcttcccagg acattggtga aacctgcacg 2160 tctcgtgtat acgtgtcgtg caacaaccca ccccccacgt acagcggacg agtggtgaaa 2220 attacggcca ttaacccatg ggacgcatca ctcgccaatt ccatgctgtc aatgtttgag 2280 accaccagtc acatccccgc ctcgacccag cgtgaaatca tgtacagagt ttgggaccca 2340 ctggtccacc tgcaaacacg tgaaccaaac acgcagatgc ttccctacat caacagggtg 2400 gttccagtat cttctgcgtt cgacttcatc cgaggcctca ggcatcatct tggactgtgc 2460 tcagttaagg gcatgtggag ggcttaccaa ggttggaata gttccagctc aattttggaa 2520 tttctgtcaa agcacatggc cgatgttacc ttcccacaca accctgagtg caccgttttc 2580 cgggccccgg acggtgacgt tatcttttac acatttgggt catacgcctg ctttgtatcc 2640 ccagcccgtg ttccatttgt tggagacccc ccaaagaccg tgcattcaaa cataacacgt 2700 aatatgacat gggccgagac actccgactg ttagcagaga ccataactga aagcttggtg 2760 cactttggcc cctttctact catgatgcac aatgtttcat acctcgccac ccgatccggt 2820 cgggaggaag aggctaaggg aaaaaccaaa catggccgtg gcgccaagca cgccaggagg 2880 ggaggcgtca gcttgtcaga tgatgaatat gatgagtggc gtgacctggt gcgggactgg 2940 cgacaagaca tgacagtcgg ggagttcgtg gaacttcgcg agcgttacgc gctcggaatg 3000 gactctgagg atgtgcaacg ttatcgtgct tggcttgagc tacgagcgat gcgcatgggt 3060 gcaggtgcct accaacacgc caccatcatt ggtaggggag ggattcaaga caccattgtc 3120 cgaacccaac caatgcgcgc ccctcgcgcg ccccggaacc aaggttatga tgaagaggcg 3180 cccacaccta ttgtcacatt cacgtctggg ggtgatcaca ttggatatgg atgtcatatg 3240 ggtaatgggg tggttgtgac agtcacacac gtcgcctccg catctgacca agtggagggg 3300 caggaattca cgattagaaa gactgagggt gagaccacct gggtgaacac caatcttgga 3360 catttacccc attaccagat cggtgatggt gctcctgtct attactcggc gcgcctgcat 3420 cctgtgacca cgcttgcaga ggggacgtac gaaacaccca acatcacagt ccaggggtat 3480 cacctgcgca tcctaaatgg atatccaaca aagcgtggag attgtggcac accctatttt 3540 gactcatgcc gtcggttggt tggtttacat gcagccacat caacaaatgg ggaaaccaag 3600 cttgcccaac gtgtgactaa gacatccaag gtggaaaatg cctttgcctg gaagggcttg 3660 gcagtcgtcc ggggccctga ctgtggaggc atgcctacag ggactcgtta ccaccgctca 3720 cccgcatggc ccaaccctgt ggagggagag acacacgccc cagcgccatt tggttccggc 3780 gatgaacggt ataaattctc ccaagtagag atgttggtca atggcttgaa accttattca 3840 gagcccactc ccggtgtacc ccccgccttg ttacaacgtg cagccactca cactcgaact 3900 tatctggaga caataatcgg cactcaccga tcaccaaact tgtcattcaa tgaggcatgt 3960 tcactcctgg aaaagtcaac atcgtgtggc ccgttcgtgg ccggccaaaa gggtgattac 4020 tgggatgagg acaaacagtg ttacacaggt gtgttggcgg aacaccttgc caaggcttgg 4080 gatgcagcca acaggggtgt tgcaccccag aatgcctaca aattggcttt aaaagatgaa 4140 ctgagaccaa ttgaaaagaa tgcacagggg aaaaggcgcc tcctgtgggg gtgtgatgca 4200 ggtgctacat tggtggccac tgcagccttt aagggtgtag ccacccgtct tcaggcggtc 4260 gccccaatga ctccagttgg tgtaggtata aacatggaca gttaccaagt agaggtgctg 4320 aatgagtcac tcaaaggtgg ggtactttac tgccttgatt acagcaagtg ggattcaaca 4380 caacaccccg ctgttacagc cgcctcactt gggattttgg agagattgtc tgaagccacc 4440 cccatcacaa catcagctgt tgagttgcta tcctcccccg ctagaggcca tttaaatgac 4500 attgtgttca tcacaaaatc tggccttcca tcaggcatgc cgtttaccag tgtcatcaac 4560 tcgctcaacc acatgaccta ctttgcagct gcagtgctga aggcatatga acaacatgga 4620 gcaccataca cgggtaacgt gtttcaggtt gagactgttc acacctacgg ggatgactgt 4680 ttgtactcag tgtgccctgc aacagcttcc attttccaaa cagttttagc caatttaacc 4740 tcttttggtc tcaagccaac tgctgcagat aaaagtgaga caatagcccc aacccacacc 4800 cccgtcttcc ttaagagaac gttgacctgc acaccacgtg gtgtgcgtgg cctactagat 4860 atcacatcca taaagagaca attcttgtgg atcaaggcca ataggacggt tgacatcaat 4920 tcaccaccag catacgatcg cgacgcgcgt agcatccagc tagaaaatgc ccttgcgtac 4980 gcatcgcagc atggtcatac agtctttgag gaagttgctg agttggcccg acacacagcc 5040 aaggctgagg ggctggtgct aaccaacgtc aactatgacc aggctctcgc tacctacgaa 5100 tcttggttca taggcggtac aggcctggta caaggcagcc ccagtgaaga gaccaccaaa 5160 ttagtgtttg aaatggaggg tgtaccccgc ccagagggcc ccaaggccaa ctccaatgaa 5220 aatgtgcctc ttgcgtcacc acaagacaca attggtccaa acgcggcact tctccttccc 5280 acgcagattg agacacccaa cggagctgca caaagggtgg agatggctgc agcgacaggg 5340 gccgttagca acaacgtccc catgtgtgtg agggagtgct ttgctagtgt gaccacgcta 5400 ccttggacaa cacgccaagc gtccaacacc tttcttggcg ccatccatct tggtccacgc 5460 attaaccctt acactgcaca tctgagtgcc atgtttgctg gttggggcgg cagtttccaa 5520 atacgggtca ccctgtctgg ttccgggctg tacgcaggcc gagcagttgt tgcagtgcta 5580 cctccaggtg tcaatccagc caatgtccaa aaccctggag tttttccaca tgctttcatt 5640 gatgcccgca ccgtggaccc catcctcatc aacctccccg acatccgtgc agtggactat 5700 caccgcgtgg atggtgatga gcaaactgca accgttgggc tctgggttgc tcaacctctc 5760 atcaacccgt ttcaaactgg atccatctcc acgtgttggt tgacatttga gactagacct 5820 ggacctgatt ttgacttttg ccttctcaag gccccagagc aagaaatgga caatggcata 5880 tcacctgcca acttactccc tcgtcgcctc gggcgatctc gaggcaacag gcttggtggc 5940 cgggtggtgg gtctcgtggt ggtggccgtt gcggaacaag ttaaccacca ctttgccgct 6000 aattccacca cgctcggttg gtcgacactc ccaattgagc ccattgctgg tgccatttcc 6060 tggtatcaga acaccacacc aggcattagc acacgcggcc tgctcagtgc tgaaggtaaa 6120 ggcatcatct ttccaaacat agtcaaccac tggactgacg ttgccctctc cagcaaaact 6180 tccgggagaa ccactgtacc aactgaccag gccaacctta accagtgtcc tggggcctct 6240 ggtcccgtcg tgatgttcca aaacaatggg gatgtgaatg agacaagtgc caacaactgt 6300 gtgttaacag ctgcctcaca tgattttgtc aacctgtcta gtaattttga tgcggctggc 6360 atgtgggttt ggctcccttg gacaactacc aagcctgatg ccacaataaa ccgcaacgtt 6420 tacatcaccc caacctggat caatggtgac ccctctcgac caatccatgg caagtgtacc 6480 aatatggttg gaactaactt tcagtttggt ggcactggta ctaacaacat tatgctttgg 6540 caggaacagc acttcacatc ttttcctgga gcagcagaag tctactgttc acagcttgag 6600 agcactgctg agatgttcca gaacaatgtt gttaatatac cagctaatca gatggcagtc 6660 ttcaatgtgg aaactgcggg caacacattt caaattgcta tcatgccaaa tggttattgt 6720 gttaccaatg cagctgttgg tactcaccag ctcctggatt acgagacaag ttttaggttt 6780 gttggacttt tcccccaaag cactagtctt caagggccca atgggaacgc tggacgggcc 6840 gtcagattcc ttgaataatg tcttggttca caggagcagc tcttgcagcc gggtccctcg 6900 tggacatggc tggtactgta tcatccattg tggcacaaca ccgccaaatt gacttgatgg 6960 cacaagcaaa ccagattcaa agagactggg tcaacaagca agaggcactc atgcggcgag 7020 gtcaggacat ctcacgcgac cttgcggtca acggcactgc ccaacgggtg gagtcgctgg 7080 taggtgcagg tttcacccct gttgatgctc gacggctggc cgggagcaca gaaacagtcc 7140 agtatggcct gctggatcgc ccaattctac aacgggaagt cctagcgggc atcagtgaaa 7200 cacatcacct acaatctatg caagcttctt tgagtgcatt caagaaaggg tccagttatg 7260 gtgccccacc tgcccctgtt gggtttgcta acccaaactt ccaaccggcc cctcctaggg 7320 tgaatttagg gtttaggcct ccatcaacca atgtttagga caccaaattc ttctcctctt 7380 ctattagtaa gttcctattt tcttttcttt ccaagtggtt cctcacgcgt tcgggtggat 7440 aattgtgatt aagcgatcac agccacatat tctagg 7476 //