ID AY596172; SV 1; linear; genomic RNA; STD; VRL; 6497 BP. XX AC AY596172; XX DT 03-MAY-2004 (Rel. 79, Created) DT 03-MAY-2004 (Rel. 79, Last updated, Version 1) XX DE Pear black necrotic leaf spot virus, complete sequence. XX KW . XX OS Pear black necrotic leaf spot virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6497 RA Yang J.-M., Min Y.-J.; RT "Nucleotide sequence of Korean isolate of apple stem grooving virus RT associated with pear black necrotic leaf spot disease on pear (Pyrus RT pyrifolia)"; RL Unpublished. XX RN [2] RP 1-6497 RA Yang J.-M., Min Y.-J.; RT ; RL Submitted (09-APR-2004) to the INSDC. RL Life Science, Seoul 121-742, Korea XX DR MD5; 9aee1042a635eeec4a9e4a2839504109. DR EuropePMC; PMC2943576; 20644968. DR EuropePMC; PMC5923438; 29570605. DR GOA; P0C1U3. DR InterPro; IPR001815; Trichovirus_mp. DR InterPro; IPR028919; Viral_movement. DR UniProtKB/Swiss-Prot; P0C1U3; MP_ASGVK. XX FH Key Location/Qualifiers FH FT source 1..6497 FT /organism="Pear black necrotic leaf spot virus" FT /isolate="South Korea" FT /mol_type="genomic RNA" FT /country="South Korea" FT /note="associated with pear black necrotic leaf spot FT disease" FT /db_xref="taxon:273525" FT CDS 37..6354 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q6PLS1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:Q6PLS1" FT /protein_id="AAT01925.1" FT /translation="MAFTYRNPLEIAINKLPSKQTDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKAHSHPVSKMIENHLLYICVPSLLSSFKSVAFFSLRE FT SKANSFLKMHSAFSHGKIKSMGMYNAIIDGKDKYRYGDVSFTSFRERVIGLRDQCLTRN FT KFPKIIFMHDELHFLSPFDIAYLFETIPEIDRVIATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCNGIQWANRRVRVTKLQSLFAHHVFSFDR FT GRACNDFNHFNKPGCLLSEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFISASFFE FT PTEFHLNMRKLLNDLATKGIEVPLPTIVLDKVNFIETRFHARMFEVASAIGVNLDLLGK FT RFDFENESEEYFSENGYLFMPSKHNTDRNWILNSCPVRVDYSKLVRARRFRLKRDFVEE FT ILKKRPPRTQLFLEFNKDFGGPVSFEKEEVEKKGEAATRVEDKAPHEPSCSNLSTEDGQ FT GFEGSLPLDLISCFEQEEIRLPKRKRKNDCVFKAIAAHLGIETQDLLNFLVNEDISDEL FT LDCIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGVNGKMYCTIKGNHCEL FT SSKECFIRLLKEGGNAQMSNENLNADSMFDLGKFVHNKERAVKLAKSMARGTTGLLNSF FT DPNFCKEVVGLSELFPDNFSSVVGLRLGFAGSGKTHKVLQWINYTPNVKRMFISPRRML FT AEEVEGRLKGTACQVHTWETALRKIDGTFMEVFVDEIGLYPPGYLTLLQMCAFRRTVKG FT QSERFLKSKLAELSKTCLSLRCFGDPLQMRYYSAEDTNLLDKTHELDLMIKTIKHKYLL FT QGYRFGEWFQSLINMPTRIDSSEISIKFFADMSSVKSEDYGLVLVARREDIGVFAGRIP FT VATVSESQGMTIDKRVLICLDQNLFAGGANAAIVAITRSRVGFDFVLKGNTLKEIQRMS FT QKTIWQFILEKKRIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDVFIMPFINLAEE FT EVDPEEICGDVIKPVEWFKCHVPVFDTDPMLAEIFDKVAAKEKREFQSILGMSNQFLDM FT EKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKTKFEEFEIQGREL FT LSEFLSMLPCEFKVNIKDIEEGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTKNAEVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLK FT RRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGSEWQLSMSTTSSKRLNQQISRLMPSRHLNFIKMQPFSSQMFSIASNDLNQMSKCLK FT VRVMDSCCPTSSCLMTQKLTPLERRATSTNTYIMELFLLASKQCCPTSGEWKGGSLYMT FT VPVWTQKEVIYVPTYSDLSLTAVTLDSDQNIAYLQLMLIWQKGSGSEWILTVHNTNRTQ FT SCLLLTLELHTGVSTQLDSWKPKQVIQDGLHRQSAAVKHLNTMKRSRWRSWITNHRCFW FT RKVHRMCILKKECSEGTRSGGRALSLPKGGQTQGQKKREDLGPSQRGLKDLGKMSLEDV FT LQLARRHRVGVYLWKTQIDPGKEILTVPPPESFKEGESFEGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQKKAREGSSGEKSKIWRIDLSN FT VVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNKLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" FT misc_feature 2377..2400 FT /note="Region: putative NTP binding helicase motif" FT misc_feature 4387..4395 FT /note="Region: putative RNA dependent RNA polymerase motif" FT CDS 5641..6354 FT /codon_start=1 FT /product="putative coat protein" FT /db_xref="GOA:Q6PLS1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:Q6PLS1" FT /protein_id="AAT01926.1" FT /translation="MSLEDVLQLARRHRVGVYLWKTQIDPGKEILTVPPPESFKEGESF FT EGRELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTTTPKEGETEEQK FT KAREGSSGEKSKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHE FT RWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNKLTPDEKQVIDRMTKRLFRTEGQK FT GVFEAGSESNLELEG" XX SQ Sequence 6497 BP; 1972 A; 1219 C; 1530 G; 1776 T; 0 other; aaatttaaca gcgcttaatt tccgcgcttt acgtccatgg ctttcactta cagaaacccc 60 ttagaaatcg caatcaataa actcccaagt aagcagactg accaactgct ttccttgacc 120 acagacgaga tagaaaagac attagaggtg accaatcgct tcttctcttt ttctatcacc 180 ccagaggatc aagaattgtt gaccaaacat ggtttaacac ttgcaccaat tggcttcaag 240 gcacactccc atccagtatc caaaatgatt gaaaatcatc tgttgtatat ctgtgttcca 300 agtttgttgt cttctttcaa gtctgttgcc tttttttccc ttagagagtc aaaagctaat 360 agttttctta aaatgcactc agccttttca catggaaaga ttaaatccat gggtatgtac 420 aatgccatta ttgatgggaa agacaaatat agatatgggg atgtctcttt tacatctttt 480 agagaacgag tgattggttt gagagatcaa tgccttacac gtaacaaatt tccaaagatt 540 attttcatgc atgatgaact acactttctg agccctttcg acatagctta cctgttcgaa 600 actatccctg agatcgatag ggtcatcgca accacagttt tcccaattga gctgcttttt 660 ggtgacaaag tttcaaagga gccaagagtt tacacctaca aagtacatgg gagttctttt 720 tctttttatc cagatggtgt ggcatctgaa tgttatgaac agaacctcgc caattcaaaa 780 tggcctttca catgtaatgg aatccaatgg gccaacagac gggtgagagt cacaaagctg 840 cagagtttgt ttgcccacca cgttttctca tttgatagag gcagggcttg caatgacttt 900 aatcatttta acaaaccagg ctgcttgctt tctgaagaga tgaggttgct cactaaaaga 960 tttgacaaag ctgtcataaa caggagcact gtttcctctt taagtacata catggcctgt 1020 ctaaagacag ctaatgccgc ttcagctgtg gcgaaactga gacaactcga aaaaagagac 1080 ctgtacccag atgaattgaa cttcgtttac tcttttggtg agcactttaa gaattttggg 1140 atgagggatg actttgatgt ctcagtgtta cagtgggtta aggacaagtt ctgtcaggtt 1200 atgcctcatt tcatctcagc cagtttcttt gaacccacag agtttcactt aaacatgcgg 1260 aaactcttaa atgatttggc cacaaagggc attgaggttc ctctccctac aattgtcctg 1320 gataaagtca acttcattga aactagattc catgcaagaa tgtttgaggt tgccagtgcc 1380 attggcgtca atctggatct actgggaaaa aggtttgact tcgagaatga aagcgaggag 1440 tacttttctg agaatggtta cctttttatg ccaagcaaac acaacacaga caggaattgg 1500 atcctaaact cctgcccggt cagggtcgat tattccaaat tagtgagggc acgaaggttt 1560 cgactaaaga gggattttgt tgaggagatc ctaaagaaaa gaccacccag gacgcagcta 1620 tttctggaat tcaacaagga ctttggaggg ccagtttcat ttgaaaaaga agaagttgaa 1680 aagaaaggag aggctgcaac gagggttgaa gacaaagccc cccatgagcc ttcttgctcg 1740 aatttgtcca ctgaagatgg ccagggcttt gaaggaagtc tccctctaga tctaattagt 1800 tgtttcgaac aggaggaaat ccgactacca aagaggaaga ggaaaaatga ttgtgttttc 1860 aaggctatcg cggctcatct gggcattgaa actcaggacc tgttaaactt tttagttaat 1920 gaagacatct ccgatgagtt attggattgt atagaggagg acaaagggtt gtctcatgaa 1980 atgattgagg aagtgcttgt aacaaaagga ctctcgatgg tttatacatc tgacttcaag 2040 gaaatggcag ttctaaatag aaagtatgga gtcaatggaa agatgtattg cacgattaaa 2100 ggtaatcatt gtgaacttag ttcaaaagag tgctttatca gacttctcaa agaagggggg 2160 aatgcccaaa tgtcgaacga aaatttgaat gccgactcaa tgtttgactt gggaaagttt 2220 gtgcacaaca aagaaagggc agtaaagctt gccaagtcca tggccagggg aaccacaggt 2280 cttctaaatt cattcgatcc aaatttttgt aaggaggtgg tgggcctgtc agagttgttc 2340 cctgacaact tttcttctgt tgttggtttg agacttggtt ttgcaggttc aggcaaaacc 2400 cacaaggtgc tgcagtggat caactacaca ccgaatgtta aaaggatgtt cattagtccc 2460 agaagaatgt tggcagaaga agtcgaaggt cgtttgaaag ggaccgcctg ccaagtccat 2520 acgtgggaga cagctttgag gaagattgat ggaactttta tggaggtttt tgtcgacgaa 2580 atagggttgt atccacctgg ctacttgacc ttgctgcaaa tgtgtgcatt caggagaact 2640 gtcaaagggc agagtgaaag atttctgaaa tcaaagcttg ctgagctctc caagacttgc 2700 ttgagcttaa ggtgttttgg cgaccccctt cagatgagat actactcagc agaggacaca 2760 aatctactgg acaagacaca tgagttggac cttatgatca aaaccatcaa acacaagtac 2820 ttgttacaag ggtacagatt tggtgagtgg tttcaaagtt taataaatat gccaaccagg 2880 attgacagct cagaaatcag tataaaattc ttcgcagaca tgtcaagtgt caagtccgaa 2940 gattacggac tggttctggt ggcaaggaga gaggacatag gtgtgtttgc tggcagaata 3000 cctgtggcga ccgtcagtga atctcaagga atgaccattg ataaaagagt gttgatatgt 3060 ttggatcaaa acttatttgc aggcggggca aatgctgcaa ttgttgcgat aactagatca 3120 agagtggggt tcgacttcgt tctcaaagga aataccttga aagagattca aagaatgtca 3180 caaaaaacta tatggcaatt catattggaa aagaagagga tccctatgga aagaatcgtc 3240 aacatgaatc ctggagcgag cttttacgag agtccacttg acgttggaaa ttcctcaatc 3300 caagataaag cgtcacatga tgtgttcata atgccattca tcaatctggc agaggaagaa 3360 gttgaccctg aggaaatctg tggagatgta atcaagccag ttgagtggtt caagtgccat 3420 gtgccagtct ttgacacaga tccaatgtta gctgaaatat ttgacaaagt tgctgccaag 3480 gaaaaaagag aatttcagtc aatactcggc atgtccaatc agttcctaga catggagaag 3540 aacgggtgca agattgacat tctacctttt gcaagacaga atgtttttcc acatcatcaa 3600 gcttctgacg acgttacttt ctgggccgga gtgcaaaaga ggattagaaa gtcaaactgg 3660 aggcgagaga agacaaagtt tgaagagttt gagattcaag gaagagaact tttgtctgaa 3720 ttcctatcca tgctgccatg tgaattcaaa gtcaacatta aagacataga agaaggggaa 3780 aaaagctttc tggaaaagag aaagctaaag tctgaaaaaa tgtgggcaaa tcattcggaa 3840 aggtctgata ttgactggaa actcgaccat gttttcctct tcatgaagtc acaatactgt 3900 acaaaagagg ggaaaatgtt cacagaggcc aaggctggac aaactctagc ttgcttccag 3960 cacattgttc tgttccggtt tggaccgatg ctcagagcca ttgagagtgc ctttttaagg 4020 agctgtgggg actcatacta tatacactca ggaaagaact tcttctgtct ggacagtttt 4080 gtaacgaaga acgccgaggt atttgacggg ttctctatag agtcagacta cactgctttc 4140 gattcgtccc aggaccacgt cattctggcc ttcgagatgg cgctattgca atatttgggt 4200 gtgtccaaag aatttcagct tgactatctg aggttaaagt tgactcttgg ttgtaggctt 4260 gggtcattgg caataatgag atttactgga gaattttgca cctttctgtt taatacattt 4320 gctaacatgc ttttcactca gctgaagtac aaaatagacc cacgaaaaca tagaatctta 4380 ttcgcagggg atgacatgtg ttccttgagc tctctcaaga ggagaagagg agagagagca 4440 acaaggttga tgaagagctt ttctttaact gcggtggagg aagtaaggaa attccctatg 4500 ttctgtggat ggtatttgag tccatatgga attatcaaat ccccaaaatt gttatgggct 4560 agaattaaaa tgatgagtga aaggcaactt ctgaaagagt gtgtggacaa ctatttgttt 4620 gaggcaatat tcgcctacag attaggtgag aggctctaca caatcttgaa agaagaagat 4680 tttgaatatc actacttagt gataaggttt ttcgtcaaaa attcaaaact gctgactgga 4740 ttaagcaaaa gcttaatatt tgaaattgga gaaggaatag ggtcagaatg gcaattgtca 4800 atgtcaacca cttcctcaaa gaggttgaat caacagatct caagattgat gccatcgcgt 4860 catctgaact ttataaagat gcaacctttt tcaagccaga tgttctcaat tgcatcaaac 4920 gatttgaatc aaatgtcaaa gtgtctcaag gtcagggtga tggactcgtg ctgtccgact 4980 tcaagctgct tgatgacaca gaaattgact ccattagaaa gaagagcaac aagtacaaat 5040 acttacatta tggagttatt cttgttggca tcaaagcaat gctgcccaac ttcaggggaa 5100 tggaagggag ggtcattgta tatgacggtg cctgtttgga cccagaaaga ggtcatatat 5160 gttcctacct attcagattt gagtctgact gctgttactt tggactcaga ccagaacatt 5220 gcctatctac aactgatgtt aatctggcaa aaaggttcag gttccgagtg gattttgact 5280 gtccacaata cgaacaggac acagagctgt ttgctcttga cattggagtt gcatacaggt 5340 gtgtcaactc agctagattc ttggaaacca aaacaggtga ttcaggatgg gcttcacagg 5400 caatcagcgg ctgtgaagca cttaaataca atgaagagat caagatggcg atcctggatc 5460 acaaatcacc gctgtttttg gaggaaggtg caccgaatgt gcatattgaa aaaagaatgt 5520 tcagagggga caagatcagg aggtcgcgct ctatctctgc caaaaggggg ccaaactcaa 5580 ggtcaaaaga aacgagagga tttaggtccc tctcagcgag gattgaaaga tttgggaaag 5640 atgagtttgg aagacgtgct tcaactagcg aggcgccacc gggtaggagt gtatctgtgg 5700 aagacacaga tagacccggg aaaggaaatt ctgacggttc ctccccctga aagcttcaaa 5760 gaaggtgaaa gcttcgaagg cagagagctt taccttcttc tctgcaacca ttactgtaaa 5820 tatcttttcg gtaatattgc tgttttcggg tcatctgata agacccagtt tcctgctgtt 5880 ggatttgata cccctccggt tcattacaat ttgacaacga ccccgaagga aggggaaact 5940 gaagagcaaa agaaggccag agagggttcg tctggcgaaa aaagcaaaat ttggagaatc 6000 gacttgtcaa atgttgtacc tgaattgaaa acctttgctg ccacttctag gcagaactct 6060 ttgaatgaat gtacattcag aaagctttgt gagccattcg ctgatttggc tcgtgagttt 6120 cttcatgaaa ggtggtcgaa aggattggcc accaacatct ataagaaatg gcccaaagct 6180 tttgaaaaaa gcccctgggt ggcatttgat tttgccaccg gtctaaaaat gaacaaattg 6240 acacctgatg aaaaacaggt gattgataga atgaccaaac ggctttttcg tactgaagga 6300 cagaaagggg ttttcgaggc aggctcggag agtaacttgg aactggaggg ttagaagtcg 6360 tatcaaattc cgcaaacttg gtcgcggtct tgcaggttga catgcctgcc tttatacgta 6420 aataaagggt tcacccggtt ttctgagcat ttccgggtta gtgtggtttt ttctagagtc 6480 tagagtttgt ccattct 6497 //