ID AY579432; SV 1; linear; genomic RNA; STD; VRL; 4766 BP. XX AC AY579432; XX DT 31-DEC-2004 (Rel. 82, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Tomato bushy stunt virus, complete genome. XX KW . XX OS Tomato bushy stunt virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4766 RX AGRICOLA; IND604391732. RA Ohki T., Uematsu S., Lesemann D.-E., Honda Y., Tsuda S., Fujisawa I.; RT "Characterization of Tomato bushy stunt virus newly isolated from RT nipplefruit (Solanum mammosum) in Japan"; RL J. Gen. Plant Pathol. 71(1):74-79(2005). XX RN [2] RP 1-4766 RA Ohki T.; RT ; RL Submitted (22-MAR-2004) to the INSDC. RL Department of Plant Disease Protection, National Agricultural Research RL Center, 3-1-1 Kannondai, Tsukuba, Ibakaki 305-8666, Japan XX DR MD5; 14d609b415517fd8ec8b9a65acb2a29f. DR EuropePMC; PMC3234231; 22174683. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4766 FT /organism="Tomato bushy stunt virus" FT /host="nipplefruit" FT /mol_type="genomic RNA" FT /country="Japan" FT /db_xref="taxon:12145" FT CDS 164..2620 FT /codon_start=1 FT /transl_except=(pos:1052..1054,aa:OTHER) FT /product="92k protein" FT /note="RNA-dependent RNA polymerase; readthrough stop codon FT of 33k protein" FT /db_xref="GOA:Q5IZF4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q5IZF4" FT /protein_id="AAT67237.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFLVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATKV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTAK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFRAK FT WDRFDKPVAIGLDASRFDQHCSVEALQYEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVYGYMRHLGINEFSLANCGDDCVLIVER FT RNLKQIQRTLPEYFLNLGYTMKVEAPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVERFYSRFTLYDTPRKHQRIDTVTN FT VHKWRGSGGSYVVTPEARASFWAAFGLTGDEQLALEDRLDRWEMDLFGIEGVDAHEPSI FT LDSAVA" FT CDS 164..1054 FT /codon_start=1 FT /product="33k protein" FT /note="ORF1" FT /db_xref="GOA:Q5IZF3" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q5IZF3" FT /protein_id="AAT67235.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSMTKFLVELLKTDCAAKWEWFMKRRQRGDYIVPLSIASIPIIPLLSYATKV FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVIASTGRPRRRPYAAK FT IAQVARAKVGYLKNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2644..3810 FT /codon_start=1 FT /product="41k protein" FT /note="capsid protein" FT /db_xref="GOA:Q5IZF2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5IZF2" FT /protein_id="AAT67236.1" FT /translation="MAMTTRNNNNVLAVSKKQLGVLAASAAAGALRNYISESGPALLQS FT AVGLGKKALNKVRNRRKQGNQQIITHVGGVGGSIMAPVAVSRQLVGSKPKFTGRTSGSV FT TVTHREYLTQVNNSSGFVVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYSFNNVVLH FT YVPLCGTTEVGRVALYFDKDSQDLEPADRVELANFGVLKETAPWAEAMLRIPTDKVKRY FT CNDSSTVDQKLIDLGQLGIATYGGAGTNAVGDVFISYSVTLYFPQPTNTLLSTRRLDLT FT GTLAGAAGPGYLVLTRTPTVLTHTFRATGTFNLSGGLRCLTSLTLGATGAVVINDILAI FT DNVGTASAYFLNCTVSSLPATVTFTTTGISSATVNVVRSTRANVINLL" FT CDS 3846..4415 FT /codon_start=1 FT /product="22k protein" FT /note="movement protein" FT /db_xref="GOA:Q5IZF1" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q5IZF1" FT /protein_id="AAT67234.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLMVNVGMEDQEVPLLPSNFLT FT KVRVGLSGGYITMRRFRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVKWQFGLSKNCYSLPQSKW FT KVMYQEDALKVLKPSKKKASKTDSSA" FT CDS 3878..4396 FT /codon_start=1 FT /product="19k protein" FT /db_xref="GOA:Q5IZF0" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:Q5IZF0" FT /protein_id="AAT67233.1" FT /translation="MERAIQGNDAREQAYGERWNGGSGGSTSPFKLPDESPSWTEWRLH FT NDETIPNQDNPLGFKESWGFGKVVFKRYLRYDGTETSLHRVLGSWTGDSVNYAASRFFG FT FDQIGCTYSIRFRGVSVTISGGSRTLQHLSEMAIRSKQELLQLTPVKVESDVSRGCPEG FT AETFKEESE" XX SQ Sequence 4766 BP; 1251 A; 1016 C; 1300 G; 1199 T; 0 other; agaaattctc caggatttct cgacctagtt cggtatctgg tgatttgcgc tatctgttgc 60 tttgcgtaga gaatttctct cctttatcac ttgtgatttg ggggtttgaa ggctgggtct 120 acctttcgag gggataaatt gtaacttcca gcaaataagc gacatggaga ccatcaagag 180 aatgatttgg cctaagaaag aaatttttgt gggtgatttc gcgatcggag ttaataggac 240 ggcaccggtg gacatcttcc agttggtgtg tcgtgtggtt ctgagataca tgaggacagg 300 gaaaatagag tgtgattccg acagcatgac gaagtttttg gttgaattgc tcaaaactga 360 ttgtgctgcc aaatgggagt ggtttatgaa gagacggcag aggggtgatt acattgtccc 420 tctatctata gcctctatcc cgatcatacc gctgttgagt tatgccacga aggtacgcgc 480 agtctcagtc aaggcgtttg gtaatgaact ttcgttcaac gttagagtgc ccagaccatc 540 tgtacctaag aaaggattgc tcctcagact ggcggcaggc ttagcactcg cacctatatg 600 cgcgctagct gtgtacgcta ccctacccag ggaaaaactg tcggtattta agctgagaac 660 tgaggcacgt gcacacatgg aggatgagag agaagcgaca gattgtttgg tggttgagcc 720 ggcacgggaa ctcaagggta aagatggtga ggatctcctc actggtagta gaatgactaa 780 ggtaattgcg tccacggggc gccctcgcag acggccttat gcagcgaaaa tcgcacaggt 840 cgcgagagct aaggtgggtt accttaagaa cactcctgaa aacaggttga tctaccagcg 900 agtcatgata gagatcatgg acaaagactg cgtcaggtat gttgacaggg atgtcatatt 960 gcccttggcc attggatgct gttttgtcta tccggatgga gtggaggagt cggcggcact 1020 ttggggttcc caggaatccc ttggtgtcaa atagggaggc ctagtacgtc tacctggggt 1080 tgtaacacag atcaatcgag atatcccatc tgatgtgttg cttccccagg aggtgctaga 1140 ggttcgtaca ggacctccca atgctaagga ccgtaatata tttatggttg caggttgccc 1200 atcacaggca cggttcttag tgcataatca ctgcctgaaa aaccttaaaa ggggtcttgt 1260 ggagagagtc ttctgcgtag agagaaacgg gaagctcgct cgcactccac aacctaccaa 1320 aggagccttt ggacgtcttt ccccgttcag gaaagcagtt tgtgagaagg ttggagtagc 1380 ccaccgactt gggtatgatg gattcctgtc atactacaac ggcgcgaaac tccgtactta 1440 cacacgagct gtggagagtc tgcatatcac tcctgtttct gagagggaca gtcatttgac 1500 taccttcgtg aaagcagaga agatatcgac ggccaagggt gacccagcac ctagggtgat 1560 acagcctcga aaccctaggt acaatgtgga acttgggaga tatctacggc atatggaatc 1620 caagctgatg aaagctgttg atggcgtgtt cggagaaaca acatgcatca agggatatac 1680 cgctgatgag gtgggtgcta tctttcgagc gaaatgggac aggtttgata aacctgtagc 1740 catagggctc gatgcatcca ggttcgatca acactgttcc gtggaagcac tgcaatatga 1800 acatagcttc tacagggcca tgtaccctgg caacaaactg ttaagtaagt tgttggaatg 1860 gcaactccat aataaaggta aaggttacgt cccggacgga accattacgt atcggaagga 1920 gggttgccga atgagtgggg atataaacac ctcgttgggg aattatctat tgatgtgtgc 1980 gatggtatat ggatacatgc gtcatctggg gataaatgag tttagtctgg cgaactgcgg 2040 agatgactgt gttctaattg tggaacgcag gaatctcaag cagatacaga ggacactacc 2100 tgagtacttc ttaaatttag ggtacacaat gaaggtagaa gcccctgtat ttcaattgga 2160 agaggttgaa ttctgccagg cacacccagt acagtttcag ggcggttgga agatggttcg 2220 caatgtccgt actgctatga gcaaagatgt gcactgtgta aataatatac gcgatttggc 2280 gacgaggagg gcctggagta acgcccaaca tcatggaggc ctggcactca gtgccggcat 2340 acctgttgtg gagcgatttt actccaggtt tacactctat gacactcctc gtaaacatca 2400 acgtattgac actgtcacaa atgttcacaa gtggcgcggc tctggtggaa gttatgttgt 2460 gacacctgaa gcgagggcta gcttttgggc agccttcggt ttgacggggg atgagcaact 2520 ggctctggag gatcgtctgg atagatggga gatggattta tttggaattg aaggtgttga 2580 cgctcacgag cccagcatcc ttgattccgc cgtagcttga ccaagtatac actaacacaa 2640 gagatggcga tgacaacgag aaataacaac aatgtgctcg ctgtgagcaa gaaacagttg 2700 ggggtcctag cagcatctgc tgctgcaggg gctctgcgta attatattag tgagagtggc 2760 ccagcactgc tacaatcagc agtgggtttg ggaaagaagg ccttaaataa ggtgaggaat 2820 cgaaggaaac agggaaatca gcagatcatt actcatgttg gtggcgttgg gggctcaatc 2880 atggctcctg tggcggtgtc caggcaacta gtaggtagta agccgaaatt taccggaagg 2940 acatctggat ctgtcacagt tacgcaccgt gagtacctta ctcaagtaaa caattcttca 3000 ggattcgtgg taaatggggg tattgtcggc aatttgttac aactcaatcc gttgaatgga 3060 acactgttct cgtggctgcc tgccatagca tccaattttg atcagtactc atttaacaac 3120 gttgtgttac attacgtccc cctgtgcggc accactgaag tagggcgtgt agcgctatac 3180 tttgataagg actcacaaga tcttgagcct gctgatagag tggagttggc gaactttggt 3240 gttctaaaag agacagcccc atgggctgag gcgatgctgc gcatacccac tgacaaagtt 3300 aagagatact gtaatgacag ttccacagtt gatcagaaac ttatagattt gggacagctt 3360 ggtatcgcta cttatggagg agcaggtaca aatgctgtag gggatgtgtt catctcctac 3420 agtgtcacac tgtactttcc tcaacccacc aacaccctgt tgagtacacg acggcttgac 3480 cttaccggaa ctttggccgg tgctgctgga cctgggtatc ttgtcctgac aagaactccc 3540 acagtcttga cgcacacttt tagggcaact ggtaccttca acctctctgg aggtttgagg 3600 tgtttgacca gtctcactct cggagcaacg ggggcggtgg ttatcaatga catacttgct 3660 attgacaatg tgggcacggc tagcgcctac tttctcaatt gcacggtatc ctctctacct 3720 gccaccgtaa cattcacaac aactggaata tcttccgcca ccgtcaacgt ggtgcgtagt 3780 acacgagcca atgttattaa cttactgtaa tctcttgtga ggggcctctt gaacaagacc 3840 agttcatgga tactgaatac gaacaagtca ataaaccatg gaacgagcta tacaaggaaa 3900 cgacgctagg gaacaagctt atggtgaacg ttggaatgga ggatcaggag gttccacttc 3960 tcccttcaaa cttcctgacg aaagtccgag ttggactgag tggcggctac ataacgatga 4020 gacgattccg aatcaagata atccccttgg tttcaaggaa agctggggtt tcgggaaagt 4080 tgtatttaag agatatctca gatacgacgg gacggaaact tcattgcaca gagtccttgg 4140 atcttggacg ggagattcgg ttaactatgc agcatctcga tttttcggtt tcgaccagat 4200 cggatgtacc tatagtattc ggtttcgagg agttagtgtc accatttctg gagggtcgcg 4260 aactcttcag catctcagtg aaatggcaat tcggtctaag caagaactgt tacagcttac 4320 cccagtcaaa gtggaaagtg atgtatcaag aggatgccct gaaggtgctg aaaccttcaa 4380 agaagaaagc gagtaagaca gactcttctg cctgagttcg cggatacaag tgtgaatcta 4440 acaacgcata caggttactc ttgttgggtt ctggatgtta tgatgacgag tcggtcgggc 4500 tccgcactgg gtttggtcgc ccaggggatg gagatatgga aagggtctcg tgtgctatca 4560 gtcggtcgaa agacgcgctt gcaacatggg cctataaccg gataagtcat agcaatacca 4620 gccaacatga attggatgcc tgtttacggg acttaggtgt cactagtgga aacgcaccca 4680 ggcgcggttg atctcaccct tcgggggggc tatagagatc gctggaagca ctaccggaca 4740 accggaacat tgcagaaatg cagccc 4766 //