Dbfetch
ID AY574055; SV 2; linear; genomic RNA; STD; VRL; 3817 BP. XX AC AY574055; XX DT 06-SEP-2004 (Rel. 81, Created) DT 23-MAY-2006 (Rel. 87, Last updated, Version 5) XX DE Groundnut ringspot virus segment M glycoprotein precursor (GP) gene, DE complete cds. XX KW . XX OS Groundnut ringspot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3817 RX DOI; 10.1007/s11262-004-7435-y. RX PUBMED; 15550772. RA Lovato F.A., Nagata T., de Oliveira Resende R., de Avila A.C., RA Inoue-Nagata A.K.; RT "Sequence analysis of the glycoproteins of Tomato chlorotic spot virus and RT Groundnut ringspot virus and comparison with other tospoviruses"; RL Virus Genes 29(3):321-328(2004). XX RN [2] RP 1-3817 RA Lovato F.A., Nagata T., Resende R.O., de Avila A.C., Inoue-Nagata A.K.; RT ; RL Submitted (16-MAR-2004) to the INSDC. RL Laboratory of Virology, Embrapa CNPH, Km 09 BR060 Rod. Brasilia Anapolis, RL Brasilia, DF 70359-970, Brazil XX RN [3] RC Sequence update by submitter RP 1-3817 RA Lovato F.A., Nagata T., Resende R.O., de Avila A.C., Inoue-Nagata A.K.; RT ; RL Submitted (16-MAY-2006) to the INSDC. RL Laboratory of Virology, Embrapa CNPH, Km 09 BR060 Rod. Brasilia Anapolis, RL Brasilia, DF 70359-970, Brazil XX DR MD5; e018718ad48d850970416f25d028e1eb. DR EuropePMC; PMC3371012; 22715400. XX CC On May 16, 2006 this sequence version replaced gi:51848025. XX FH Key Location/Qualifiers FH FT source 1..3817 FT /organism="Groundnut ringspot virus" FT /segment="M" FT /isolate="SA-05" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:12675" FT misc_feature <1..330 FT /note="intergenic region" FT gene complement(331..3732) FT /gene="GP" FT CDS complement(331..3732) FT /codon_start=1 FT /gene="GP" FT /product="glycoprotein precursor" FT /db_xref="GOA:Q672G3" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q672G3" FT /protein_id="AAU10600.2" FT /translation="MRLIKLLELMIKLSLFAIALSSVLLSILLFRATDAKVEIIRGDHP FT EIYDDSSENEVSTTSLMLRRTVPEVLPGNLKAHSDRSRTERAEKQAPTLQVESSSEKAV FT SIQDIPNNCLNISLKCEVKGISTYNVYYQVENNGVIYSCVSDSADNLGRCDNSQNLPKK FT FPEIPVIPITKLDNKRHFSVGTKFFITESLASGNYPISYNSHQTEGIVSLQTVKLSGDC FT KITKSNFANPYTVSITSPEKIMGYIIKRLGEDGEHKVMAFSGSVSITFSEEMLDGNHNL FT LCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVNKT FT TKPLFLWYDLIGLITYPLLLILNYLWKYFPFKCANCGNLCIVTHECTKKCICNKSKASR FT EHSSECPILSKESDHEYNKYKWTSMEWFHLIINTKLSLSLLKFITEVLIGLIILSQMPM FT SMAQTAQCLNGCFYIPGCNQMVTSKFEKCPEANQCFCSIREEKIIESIFGTNIVIEGPN FT NCIANQDCLESSPMDTFIKCRLGCEYLELSRNKPLFNSFLDYTGSSLGLTSSSLYMTKR FT LRNGIIDSYNVTDKISGIVAGDSLKQNETSIPENILPRQSLIFDSIVDGKYRYMVEQSL FT LGGGGTVFMLNDKTSGTAKKFTIYIRSTGVHYEVSEKYTTAPIMSTHTDYYSTCTGNCD FT TCRKNQASTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNVYDMDKSYRIYSVLKS FT TIIADVCISGILGDQCTKITEEVPYENSVFQADIQADLHNDGITVGELIAHGPDSHIYA FT GNIANLNDPVKMFGHPQLSHDGVPIFTKKPLSGEDMSWDCAAIGKKSVTIKSCGYDTYR FT FKSGLEQISDIPVTFKDLSSFFLEKTFSLGKLKMVIDLPSDLFKVTPKKPSITSTRLEC FT NGCLLCGKGLSCNFEFFSDLVFSTSISIESCSLSSYQLAVKKGSNKYNITMYCSVNPDK FT KKIKMYPEGNPELTVEVPINTVVVKDPENIIDQNDEYAHEEQQYNSDSSAWGFWDYIKS FT PFNFVASYFGSFFDTIRVILLLAFIFLVIYLCSMLTSMCRGYVKNGSYKIRSKIEDDDD FT LEIKEPMMVRDTMTRRRPPMDFSHLV" FT misc_feature 3733..3817 FT /note="3' nontranslated region" XX SQ Sequence 3817 BP; 1171 A; 705 C; 668 G; 1273 T; 0 other; ttgccttaac aggtaattaa agcatttcat tctgcatgca gcaagttcgc gagtatctat 60 aaaaatcaat tttaaagtca agcataatta taattaaaca gaaatctaaa aatccagaaa 120 aatcaaaatt aaaaatccaa aaaaatctaa aaccagaaaa tcaaaaaaca aaaacaaata 180 aggctgaaaa gccaaatctg gcccgaaggc tctttttttg gttttttggt tttatatata 240 tatatacata catatgtatc tatatgttta ttttatttgt tttatttatt ttatgtggtt 300 ttaaccaaca cttaacttga acatgcaatt ctaaactaga tgagagaagt ccataggggg 360 ccttcttctc gtcatggtat ctctgaccat cataggttcc ttaatttcta aatcatcatc 420 atcttctatc ttagatcgaa ttttataaga accattttta acatatcctc gacacataga 480 agtcagcata gaacataaat agattaccaa aaagataaaa gctagaagca atataactct 540 gatagtgtca aagaaagatc caaagtaact ggcaacaaaa ttgaaaggac ttttgatata 600 atcccaaaaa ccccatgcag aagagtctga attgtactgt tgctcttcgt gagcatactc 660 atcattctga tcgatgatgt tttcaggatc tttaactact actgtgttaa ttggaacttc 720 tacagtaagt tctggatttc cttctggata cattttgatt tttttcttat ctggattgac 780 tgagcaatac attgttatgt tgtatttatt tgatcctttt tttacagcta attggtagct 840 agatagagaa caggattcta tagaaataga ggttgaaaat accaggtccg aaaagaactc 900 gaaattgcaa gacaagcctt tcccacacaa gagacaacca ttgcattcta atctagttga 960 agttatagaa ggcttttttg gagtcacttt aaagagatca gaaggaagat ctattaccat 1020 ttttaacttt cctaagctga atgttttctc taggaagaag ctggaaagat ctttgaaggt 1080 aactggaatg tctgatatct gttccaatcc agatttgaac ctatatgtat cataaccaca 1140 agattttatg gtaactgatt ttttgcctat tgctgcacag tcccaagaca tatcttcccc 1200 tgaaaggggt ttcttggtga agataggtac accatcatgg cttagctgtg gatgtccaaa 1260 cattttcaca gggtcattta agttagcaat gtttcctgca tatatatgac tatcaggtcc 1320 gtgagctatt agttcgccga cggttattcc atcattgtgc aaatctgcct gtatatcagc 1380 ctggaaaaca gagttttcat aaggtacttc ttcagtgatt ttggtacatt gatctcctaa 1440 aattccagaa atgcacacgt cagctattat agtggatttc aagacagaat agatcctgta 1500 ggatttatcc atgtcataaa catttctgca gaaaccacat gttgcacctt cattaatggc 1560 aaagcaccat gcttcctcac agccccagta agatgttggt gtaatgcaaa agtcttggaa 1620 accagtcgaa gcttgatttt ttctgcatgt atcacaattg ccagtgcaag tcgagtaata 1680 atctgtgtga gtgctcataa taggagctgt tgtgtacttt tcagaaactt cataatgtac 1740 tcctgtgctc cttatataaa tcgtgaactt ttttgctgtt ccggatgttt tatcatttaa 1800 catgaacaca gttccacctc ctccaagaag agattgttct accatgtatc tgtatttacc 1860 gtctacgatg gaatcaaaga tcaaagattg gcgaggcaat atattctcag gtatacttgt 1920 ctcattctgt tttaaagaat ctccagctac tattcctgaa attttatctg tcacattata 1980 cgaatcaatt atgccatttc tcaatctttt tgtcatatat aaactcgaag aagttagccc 2040 taaagagctt cctgtataat ccaagaaact attaaataaa ggtttgttcc gagatagctc 2100 taaatattca caacctaacc tgcactttat gaaagtgtcc atagggctgc tttccaagca 2160 atcttgatta gcaatacaat tattgggtcc ttcgataaca atgtttgttc caaaaatact 2220 ttctattatt ttctcctccc taatactgca gaagcattga tttgcttctg gacacttttc 2280 aaacttgctg gtcaccattt gattacaccc tggaatataa aaacaaccgt ttaggcattg 2340 ggctgtttga gccattgaca taggcatttg ggacaatata atcaacccta taagaacttc 2400 tgtgataaat ttgagtaagc tcaggctaag ttttgtgttt attatcagat gaaaccactc 2460 catgctagtc catttgtatt tgttatattc gtggtctgat tcctttgaaa gtatagggca 2520 ttctgaagaa tgttcccttg aagctttgct tttgttgcaa atgcattttt ttgtgcattc 2580 atgtgtaaca atgcataaat tgccacaatt ggcacatttg aatgggaaat atttccacag 2640 ataatttaaa atcaatagca gagggtaagt tatcaagcct ataagatcat accacaagaa 2700 cagaggctta gtagtcttat tcactaacca acgtataggg aaatatatca acaatgcgat 2760 caaaatcaga cgtatccagg aaaaattgat gcaagctgtt tgtttgtaga tgcttttaga 2820 atacttaatt atgcaatccc tgactctttt gtttgtttta ggaattttag ccgatttgtc 2880 accacacaag agattgtgat ttccatccaa catctcctca ctaaacgtta tactaactga 2940 tccagaaaaa gccataactt tgtgctctcc atcttctccc agcctcttaa tgatataacc 3000 catgattttc tctgggctgg taatgctcac ggtgtatgga ttggcaaagt tagatttagt 3060 tatcttgcaa tcaccagaaa gcttaacagt ctgcaatgaa acaatacctt ctgtttgatg 3120 tgaattatag gaaatcggat aattgccaga ggctaagctc tcagtgataa agaactttgt 3180 tccaacagaa aaatgccttt tgttgtccag tttagttata gggatcactg ggatttctgg 3240 aaacttcttt gggagattct gagaattgtc acatcgcccc agattatctg cagaatctga 3300 aacacaggaa taaatgacac cattattttc gacttggtag tacacattgt aagtcgatat 3360 ccctttgacc tcgcatttta gggatatatt tagacaattg ttagggatgt cttggataga 3420 cacagctttt tctgagctag attcaacttg gagagtggga gcctgctttt cagctcgttc 3480 tgttctggat ctatcagagt gtgctttgag gtttccggga agaacctctg gcactgttct 3540 gcgcaacatc aaagaagttg tggatacctc attctcagaa gaatcatcat aaatttctgg 3600 atgatcccct cgaattattt caacttttgc atcagtagct ctgaacaaca gaatgctcag 3660 taaaactgag cttagtgcta ttgcaaaaag actcagtttt atcattagtt ctagtagttt 3720 tattagtctc atcctaaacg tttgcctgga ttgtgatggt tgtctgttta attgtactat 3780 gtccgggtta agatttttgt ttgcactgat tgctctt 3817 //