ID AY574054; SV 2; linear; genomic RNA; STD; VRL; 3822 BP. XX AC AY574054; XX DT 06-SEP-2004 (Rel. 81, Created) DT 29-JUN-2006 (Rel. 88, Last updated, Version 3) XX DE Tomato chlorotic spot virus segment M glycoprotein precursor (GP) gene, DE complete cds. XX KW . XX OS Tomato chlorotic spot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-3822 RX DOI; 10.1007/s11262-004-7435-y. RX PUBMED; 15550772. RA Lovato F.A., Nagata T., de Oliveira Resende R., de Avila A.C., RA Inoue-Nagata A.K.; RT "Sequence analysis of the glycoproteins of Tomato chlorotic spot virus and RT Groundnut ringspot virus and comparison with other tospoviruses"; RL Virus Genes 29(3):321-328(2004). XX RN [2] RP 1-3822 RA Lovato F.A., Nagata T., Resende R.O., de Avila A.C., Inoue-Nagata A.K.; RT ; RL Submitted (16-MAR-2004) to the INSDC. RL Laboratory of Virology, Embrapa CNPH, Km 09 BR060 Rod. Brasilia Anapolis, RL Brasilia, DF 70359-970, Brazil XX RN [3] RC Sequence update by submitter RP 1-3822 RA Lovato F.A., Nagata T., Resende R.O., de Avila A.C., Inoue-Nagata A.K.; RT ; RL Submitted (28-JUN-2006) to the INSDC. RL Laboratory of Virology, Embrapa CNPH, Km 09 BR060 Rod. Brasilia Anapolis, RL Brasilia, DF 70359-970, Brazil XX DR MD5; 3d14e57e8b5679140294a04f6a866922. DR EuropePMC; PMC3371012; 22715400. XX CC On Jun 28, 2006 this sequence version replaced gi:51848023. XX FH Key Location/Qualifiers FH FT source 1..3822 FT /organism="Tomato chlorotic spot virus" FT /segment="M" FT /mol_type="genomic RNA" FT /country="Brazil" FT /db_xref="taxon:12851" FT 3'UTR complement(1..333) FT gene complement(334..3738) FT /gene="GP" FT CDS complement(334..3738) FT /codon_start=1 FT /gene="GP" FT /product="glycoprotein precursor" FT /db_xref="GOA:Q672G6" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q672G6" FT /protein_id="AAU10599.2" FT /translation="MRLIKLLELMIKLSLFAIALSSVLLSILLFRATDAKVEIIRGDHL FT EIYDDSSENEVSTTSLMLRRTVPEVLPNGNFKAHSDKSRTERAEKQAPILQDETSSEKA FT VSIQEVPNNCLNASLKCEIKGVSTYNVYYQVESNGVIYSCVSDSADNLGRCDNSQNLPK FT KFPEIPVIPITKLDNKRHFSVGTKFFITENLASGNYPVSYNLHQTEGIVSLQTVKLSGD FT CKITKSNFANPYTVSITSPEKIMGYIIKRPGEDGEHKVMAFSGSVSITFSEEMLDGNHN FT LLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVNK FT TTKPLFLWYDLIGLITYPLLLILNYLWKYFPFKCANCGNLCIVTHECTKKCICNKSKAS FT REHFSECPILSKEPDHEYNKYKWTSMEWFHLIINTKLSLSLLKFITEILIGLIILSQMP FT MSMAQTAQCLNGCFYVPGCNQMVTSKFEKCPEANQCFCSVRKEKIVESIFGTNIVIEGP FT NDCIANQDCLESSPMDTFIKCRLGCEYLELFRNKPLFNSFLDYTGSSLGLTSASLYMTK FT RLRNGIIDSYNVTDKISGIVAGDSLKQNETSIPENILPRQSLIFDSIVEGKYRYMIEQS FT LLGGGGTVFMLNDKTSGAAKKFTIYIRSTGIHYEVSEKYTTAPIMSTHTDYYSTCTGNC FT DTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNVYDMDKSYRIYSVLK FT STIIADVCISGILGDQCTKITEEVPYENSVFQADIQADLHNDGITVGELIAHGPDSHIY FT AGNIANLNDPVKMFGHPQLSHDGVPIFTKKTLSGEDMSWDCAAIGKKSVTIKSCGYDTY FT RFKSGLEQISDIPVTFKDLSSFFLEKTFSLGKLKMVIDLPSDLFKVAPKKPSITSTRLE FT CNGCLLCGKGLSCNFEFFSDLVFSTSISMESCSLSSYQLAVKKGSNKYNITMYCSVNPD FT KKKIKMYPEGNPELSVEVPINTVVVKDPENIIDQNDEYAHEEQQYNSDSSAWGFWDYIK FT SPFNFVASYFGSFFDTIRVILLIAFIFLVIYLCSMLVSMCRGYVKNGSYKIRSKIEDDD FT DLEIKEPMMVRDTMTRRRPPMDFSHLV" FT 5'UTR complement(3739..3822) XX SQ Sequence 3822 BP; 1177 A; 710 C; 664 G; 1271 T; 0 other; tgatcctaat agataattaa aagtatttta ttctgaacgt agcaagttca caagtatcta 60 taaaaatcaa tttcgaagtc aagtataatt acaattaaac aaaaaatcca aaaaaatctg 120 agaaccaaaa atcaaaaatc caaaaaatct gaaaaccagg aaacaaaaca aaaaacaaaa 180 acaaataagg ctgaaaagcc aaatttggcc cgaaggctct tttttggttt ttcagatata 240 tacatatata tatatgcatc tatatattca ttttattagt ttttatttta ttttatgtag 300 tttttgatca gcaattaatt tgaacatgca attttaaact agatgagaga agtccatagg 360 tggtcttctt ctcgtcattg tgtctctaac catcataggt tccttaattt ctagatcatc 420 atcatcttca atcttagatc gaattttata agaaccattt ttaacatatc ctcgacacat 480 ggaaaccagc atagaacata aatagattac caggaagata aaggctataa gcagtataac 540 tctgatagtg tcgaagaaag atccgaaata actggcaaca aaattgaaag gactcttgat 600 ataatcccaa aaaccccatg cagaagaatc tgaattatac tgttgttctt cgtgagcgta 660 ctcatcattc tgatctatga tgttttcagg atctttaact actactgtgt taattgggac 720 ttccacagaa agttctggat ttccttctgg atacattttg atcttcttct tatctggatt 780 aaccgagcaa tacattgtta tgttatattt atttgatcct ttcttcacag ctaattgata 840 gctggataga gagcaagatt ccatagagat tgaggtagaa aacaccaagt ctgaaaagaa 900 ctcaaaattg caagacaagc ctttcccaca caaaagacag ccattgcatt ctaatctagt 960 tgaagttata gatggcttct ttggagctac tttaaagaga tcagaaggaa gatctattac 1020 cattttcagt ttccctaagc tgaatgtttt ctctaaaaag aagctggaaa gatctttgaa 1080 ggtaacagga atatctgata tctgttccaa tccagatttg aacctatatg tatcataacc 1140 acaagatttt atggtgactg acttcttacc tattgctgca caatcccaag acatatcttc 1200 ccctgaaagg gttttcttag tgaagatagg tacaccatca tgacttaact gtggatgccc 1260 aaacattttc acaggatcat ttaagttggc aatgttccct gcatatatgt gactatcagg 1320 tccatgagct attagttcac ctacagttat tccatcattg tgcaaatctg cctgtatatc 1380 ggcttggaaa acagagtttt cgtaaggtac ttcttcagtg attttggtac attgatctcc 1440 taaaatgcca gaaatgcaca catcggctat tatagtggat tttaagacag aatagatcct 1500 gtaggattta tccatgtcat aaacatttct gcaaaagcca caagttgctc cttcgttaat 1560 ggcaaagcac catgcttcct cacagcccca gtaagatgtt ggtgtaatgc aaaagtcttg 1620 gaaaccggtc aaagcttgat tttttctaca tgtatcacaa ttgccagtgc aagtcgagta 1680 ataatctgtg tgagtgctca tgataggagc tgttgtgtac ttttcagaaa cttcgtaatg 1740 aattcctgtg ctccttatgt aaattgtaaa cttctttgct gctccagagg ttttatcatt 1800 caacatgaac acagttccgc ctcctccaag tagagattgt tctatcatgt atctgtattt 1860 accttctaca atggaatcaa agattaatga ttggcgaggt aatatattct caggtatact 1920 tgtctcattt tgcttcagag agtctccagc tactattcct gaaattttat ctgtcacatt 1980 atatgagtct attatgccat ttctcaatct ttttgtcatg tataagcttg cagaggttag 2040 ccctaaagag cttcctgtgt aatccaaaaa actattgaat aagggtttat tccgaaatag 2100 ctccaaatat tcacaaccta atctgcactt tatgaaagtg tccatagggc tgctttccag 2160 gcaatcttga ttagctatac aatcattagg tccttcaatt acaatgttag tcccgaaaat 2220 gctttctact attttctcct tcctaacact gcagaagcat tgatttgctt ctgggcactt 2280 ttcaaacttg ctagtaacca tttgattaca ccctggaaca taaaaacagc cgtttagaca 2340 ttgagctgtt tgagccattg acataggcat ttgagacaat ataatcaacc ctatgagaat 2400 ttctgtgata aatttgagta agctcaggct aagttttgtg tttattatca gatgaaacca 2460 ttccatgcta gtccatttgt atttgttata ttcgtgatct ggttcctttg aaagtatagg 2520 gcattctgaa aaatgctctc ttgaagcttt gcttttgttg caaatgcatt tttttgtgca 2580 ttcatgtgta acaatgcata agttgccaca gttggcacac ttgaacggaa aatatttcca 2640 cagataattt aaaatcaata gcaaagggta agtgatcaag cctataagat cataccacaa 2700 aaacagaggc ttggtggtct tattcaccaa ccagcgtatg gggaaatata tcaacaaggc 2760 gatcaaaatt agacgtatcc aagagaaatt gatgcaagcc gtttgtttgt agatgctttt 2820 agaatactta attatgcaat ctctgactct tttgtttgtt ttaggaattt ttgctgattt 2880 atcaccgcac aagagattgt gattgccatc taacatttcc tcactaaacg ttatactgac 2940 tgatccagaa aaagccatga ctttgtgctc tccgtcttct cccggtctct tgatgatata 3000 tcccataatt ttctctgggc tagtaatgct cacggtgtac ggattggcaa aattagattt 3060 agttatcttg caatcaccag agagcttaac agtctgcaat gaaacaatac cttctgtttg 3120 atgtagatta taggaaaccg ggtaattgcc agaggctagg ttctcagtga taaagaactt 3180 tgttccaaca gaaaaatgcc ttttgttgtc taatttagtt atagggatca caggaatttc 3240 tggaaatttc ttcggtagat tctgggaatt gtcacatcgc cccagattat ctgcagaatc 3300 tgaaacacaa gaataaataa caccattact ttcaacttga tagtacacat tgtaagttga 3360 tactcctttg atttcacatt ttagggatgc attcaggcaa ttgttaggga cttcttgtat 3420 agatacagct ttttctgagc tagtttcatc ttgaagaata ggagcctgct tctcagctcg 3480 ttctgttctg gatttatcag agtgtgcttt gaagtttcca ttgggaagaa cctctgggac 3540 tgttctgcgc aacatcaaag aagttgtaga tacctcattc tcagaagaat catcataaat 3600 ttctaggtga tctccccgaa ttatttccac ttttgcatca gtagccctga acaacagaat 3660 gctcagtaaa actgagctta gtgctattgc aaaaagactc agttttatca ttaattctag 3720 tagttttatt agtctcattc taaacgtttg cctggattgt gatggttgtc tgtttaattg 3780 tactatgtcc gggttaagat ttttgtttgc actgattgct ct 3822 //