ID AY571290; SV 1; linear; genomic RNA; STD; VRL; 6612 BP. XX AC AY571290; XX DT 14-APR-2004 (Rel. 79, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Odontoglossum ringspot virus strain Taiwan, complete genome. XX KW . XX OS Odontoglossum ringspot virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6612 RA Wang H.L., Wang J.N.; RT "Molecular sequencing and analysis of the viral genome of Odontoglossum RT ringspot virus Taiwan strain"; RL Zhi Wu Bing Li Xue Hui Kan 13:0(2004). XX RN [2] RP 1-6612 RA Wang H.L., Wang J.N.; RT ; RL Submitted (11-MAR-2004) to the INSDC. RL Graduate Institute of Biology Science, National Kaohsiung Normal RL University, 116, Ho Ping 1 Rd, Kaohsiung 802, Taiwan XX DR MD5; 7f56cb2ee64160b869d581111c72d4bb. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01083; UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6612 FT /organism="Odontoglossum ringspot virus" FT /strain="Taiwan" FT /mol_type="genomic RNA" FT /db_xref="taxon:12238" FT gene 64..4902 FT /gene="RdRp" FT CDS 64..4902 FT /codon_start=1 FT /transl_except=(pos:3400..3402,aa:OTHER) FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase readthrough protein" FT /db_xref="GOA:Q6PY89" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6PY89" FT /protein_id="AAS87224.1" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSV FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVALHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQALSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKECDEFDITQF FT KNLCEEKDIDPDVVAKVIVAIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFDLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKNMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDG FT EPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTSDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGILXQLQVGSIFKGENLFVPCPKSGYISDMQFYYDTLLPGNSTILNEYDAVTMNLRE FT NNLNVKDCTIDFSKSVSVPRQQQEFFTPVIRTAAERPRSAGLLENLVAMIKRNFNSPDL FT TGILDIEDTAELVVNKFWDAYIIDELSGGNVTPMTSDAFHRWMAKQEKSTIGQLADFDF FT VDLPAIDQYKHMIKAQPKQKLDLSPQDEYAALQTIVYHSKQINAIFGPLFSELTRQLLE FT RIDSSKFLFYTRKTPEQIEEFFSDLDSTVPMEVLELDISKYDKSQNEFHCAVEYLIWEK FT LGLNGFLEEVWKQGHRKTSLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACLASMIP FT MDKVIKAAFCGDDSILYIPKGLDLPDIQSGANLMWNFEAKLYRKRYGYFCGRYIIHHDR FT GAIVYYDPLKLISKLGCKHIKSLDHLEEFRISLCDVSSSLNNCAYFGQLNDAIAEVHKT FT AVNGSFAFCSIVKYLSDKNLFRTLFYNGSSTKG" FT CDS 64..3402 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase/replicase" FT /db_xref="GOA:Q6PY88" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6PY88" FT /protein_id="AAS87223.1" FT /translation="MAHFQQTMNNKVIEAGMGRNSLINDLAQRRVYDNAVEELNHRSRR FT PKVNFSKVISQEQIIQATNAYPEFEITFYNTQLAVHSMAGGLRALELEYLMMQIPFGSV FT TYDIGGNFSAHLYKGRDYVHCCMPNLDIRDVARHINQQDTVSTYLARLERSKRGLPVFQ FT QSAFNKYMNDPDAVCCDKRFQDCSYSVDLPGKTYAVALHSIYDIPADEFGAALLRKDVH FT ICYAAFHFSENLLLETTSAPLDEIGATFYKSGDRLSFFFQNESTLNYEHSYKNVIKYVC FT KTFFPASNRFVYHKEFMCTRVNTWFCKFTKVDTYFLFRGVYTRGEDSEQFYTAMDEAWE FT YKKTLAMLNSERTIFRDRAAVNFWFPKVKDMVIVPLFDGSVTSGKMKRSEVMVNKDFVY FT TVLNHIRTYQDKALTYKNVLSFVESIRSRVIINGVTARSEWDVDKSVLQALSMTFLLQT FT KLAEAKDQVVLKKFQKFDDTVTNLFWKQISDAVGDLFPSIKERLISGGFVKVAEQSLQI FT KTPDEYITFADKLVMEYKATEELQHLDISKPLERAEKYYNALSELSVLKECDEFDITQF FT KNLCEEKDIDPDVVAKVIVAIMKNELTLPFKNPTPEALSDALSPLPKDLDMRFDLLKLS FT TCAPFPSVKTLDSGLLPKQSYGDERQFESQSVVSVSDFHLKSVESVKMKNMSSAVYTGP FT LKVQQMKNYMDYLSASISATVSNLCKVLKDVYGADPESAEKSGVYDVVKGKWLLKPKDK FT CHAWGVAELNNGEKVIVLLEWADGFPICGDWRRVAVSSDSLIYSDMGKLQTLLSCLKDG FT EPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRAT FT KDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFI FT NRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTSDVIRSVDAEV FT VRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDVSV FT VRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSKVSDFILDMYKV FT DAGIL" FT gene 4808..5719 FT /gene="MP" FT CDS 4808..5719 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:Q6PY87" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q6PY87" FT /protein_id="AAS87225.1" FT /translation="MGRLRFVVLLSIFPIKTFSEPCSTMALVLRDSIKISEFINLSASE FT KLLPSALTAVKSVRISKVDKIISYENDTLSDIDLLKGVKLVENGYVCLAGLVVTGEWNL FT PDNCKGGVSICLVDKRMKRANEATLGSYHTSACKKRFTFKIIPNYSVTTADALKGIWQV FT MTNIRGVEMEKGFCPLSLEFVSICIVYLNNIKLGLREKILNVTEGGPTELTEAVVDEFV FT EKVPMAARLKSFRSVNKKKPSNSSKFVNGKSRLNSRNKLNYENGDSDVGTSVVDDIVVS FT NGVSDIRIDDDCESFDAQSDSY" FT gene 5722..6198 FT /gene="CP" FT CDS 5722..6198 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:O12854" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:O12854" FT /protein_id="AAS87226.1" FT /translation="MSYTITDPSKLAYLSSAWADPNSLINLCTNSLGNQFQTQQARTTV FT QQQFADVWQPVPTLTSRFPAGAGYFRVYRYDPILDPLITFLMGTFDTRNRIIEVENPQN FT PTTTETLDATRRVDDATVAIRSAINNLLNELVRGTGMYNQVSFETMSGLTWTSS" XX SQ Sequence 6612 BP; 1971 A; 1176 C; 1431 G; 2034 T; 0 other; ggtattgttc gattactaca atcacaacaa acaattacaa caaaattcac aattcacatt 60 aacatggcac acttccaaca aacaatgaac aacaaagtta ttgaggctgg tatgggcaga 120 aacagcctca ttaacgattt ggctcagaga cgtgtttacg ataacgctgt cgaagagtta 180 aaccaccgtt ctagacgccc aaaggttaac ttttccaagg tcatttctca ggaacagatt 240 attcaagcta ctaatgcgta ccctgagttt gaaatcacct tttacaacac tcaactcgct 300 gtccactcga tggcgggagg tcttcgagca ctcgagctcg agtatcttat gatgcaaatc 360 ccatttggtt ctgttacgta tgacatcggg ggaaactttt cagcgcactt atataaagga 420 cgagattacg tccattgctg tatgcctaat cttgacattc gcgatgtggc tcgtcacatc 480 aatcaacaag atactgtttc tacttatctg gctaggctcg agagaagcaa gaggggtctt 540 ccggtttttc agcaatcagc ttttaataaa tatatgaatg accctgatgc tgtgtgctgc 600 gataaaaggt ttcaagactg ttcttactcc gttgatcttc cgggaaaaac atacgctgtg 660 gcgcttcata gtatctatga tattccagcg gatgagttcg gagctgcctt attacgaaag 720 gatgttcaca tatgttatgc tgcttttcat tttagtgaga atctgcttct tgagactacg 780 tctgctccgc tcgatgagat tggagcgacg ttttacaagt caggggatag attatccttt 840 ttctttcaaa atgagagcac attgaattat gaacattctt ataaaaacgt aattaaatat 900 gtttgcaaga cttttttccc agcttcaaat aggtttgtct accataagga atttatgtgc 960 accagagtta acacatggtt ttgtaagttc accaaggtag atacttattt ccttttccga 1020 ggggtgtata ctaggggaga agattctgaa caattttaca ctgctatgga tgaagcatgg 1080 gagtataaga aaactttggc aatgcttaat agcgaaagga cgatctttcg cgatcgcgct 1140 gcggttaact tttggtttcc taaagttaag gatatggtta ttgtgccgct ttttgatggt 1200 tccgtcactt caggaaagat gaaaagaagt gaagtcatgg ttaacaagga ttttgtttac 1260 accgttttaa atcacatccg tacctatcaa gacaaagcct tgacgtataa aaacgttctt 1320 tcctttgtcg agtcaattag gtctcgtgtg attattaatg gtgtgactgc aagatctgag 1380 tgggatgtag acaagtctgt gttacaggcg ttatctatga cttttctttt acagacgaag 1440 ttggctgaag caaaagatca agtcgtactt aaaaaatttc aaaaatttga cgatacagtt 1500 actaatcttt tctggaaaca gattagtgat gctgtaggcg atctcttccc gtcgattaag 1560 gaaaggctca ttagcggtgg gtttgtaaaa gttgctgagc aatctttaca aattaaaacg 1620 cctgatgagt atatcacctt tgcagataaa ctggttatgg aatataaagc aactgaagag 1680 cttcaacatc tagacattag taagcctctt gagagagccg agaaatatta taacgcttta 1740 tcggaactat cggttctcaa ggaatgtgac gagtttgata taacgcaatt caagaattta 1800 tgtgaagaaa aggacattga tccagacgtc gtggcgaaag tgatcgtcgc catcatgaag 1860 aacgaactca cactgccttt taaaaatcca acgcctgaag cattatcgga tgctctttca 1920 ccgttaccca aagacttgga tatgagattt gatctgctta aattaagtac gtgtgcaccc 1980 tttccaagcg ttaaaacttt agatagtggt ttattaccaa agcaaagcta cggtgacgaa 2040 agacaatttg agagtcaatc tgtcgtgtct gtatctgatt ttcatcttaa gagcgtcgag 2100 tcagtaaaaa tgaaaaacat gtcgtcagcg gtctacacag gtcccctcaa agttcaacag 2160 atgaagaact atatggatta cctgtccgca tcgatttcgg ctactgtttc aaatttatgc 2220 aaggtgctaa aggatgtcta tggtgccgac ccagagtctg cagaaaagtc tggagtctac 2280 gatgtagtga aaggcaaatg gttattaaaa ccaaaggata aatgtcacgc ttggggtgtt 2340 gccgaactta acaatggcga gaaagtcatc gtattactcg aatgggctga tggattccct 2400 atttgtggtg attggcgacg agtggccgtc tcttcagatt cccttattta ttcagatatg 2460 ggaaaacttc agacgttgtt aagctgctta aaggacggtg agcccgtacc ttcggatgcg 2520 aaagtcacgt tggtagatgg cgttcctggt tgtggaaaaa caaaggaaat tcttgaaact 2580 gtgaattttg atgaggactt aatacttgtt cctggtaaag aagcttgtaa aatgattatc 2640 aagagagcca ataagtctgg acatgtaaga gcgacaaagg ataatgtaag aactgtggat 2700 tcgttcttaa tgcatctgaa gcctaagact tataacaaac tgtttatcga tgaaggtttg 2760 atgttacata ctggttgtgt caactttctg atagcattgt cccattgtcg tgaggcgatg 2820 gtttttggtg atactgaaca aattcccttt ataaacagag tggcaaattt cccttatccg 2880 aaacattttg ctacacttgt ttatgatcat agggaggtta ggaggttatc acttagatgc 2940 ccggcagatg ttacgcattt tatgaactcc aaatatgacg ggaaagtttt atgtacgagt 3000 gatgtgattc gctcagttga tgctgaagtg gttagaggga aaggggtttt taacccgaaa 3060 agcaaaccgc ttaaagggaa aattatcacc ttcactcaaa gtgacaaagc cgaactgaag 3120 gagcgtggtt atgaagaagt ttcaactttt ggtgaagtta acaccgtaca cgaaatccaa 3180 ggtgagacct ttgaagacgt atcggttgtt cgtttgacac caactccatt ggagcttata 3240 tcaaagagtt caccgcacgt tcttgttgca ttgacaagac atactaaaag cttcaaatat 3300 tactctgtgg ttctcgatcc tctcgtcaaa gtttgctctg atttaagcaa ggtgtcagac 3360 tttatactgg atatgtataa ggtcgatgcc gggatcttat agcaattaca ggtagggagt 3420 atcttcaaag gcgaaaatct attcgtacca tgtcctaaat ctggttatat ttctgatatg 3480 caattttatt atgacacttt gttacctgga aacagcacta ttttaaacga gtatgatgca 3540 gtgactatga atcttcgtga aaataatctt aatgtcaagg attgcacgat agatttttct 3600 aaatctgtta gtgtcccgag acaacaacaa gagtttttca caccagtcat tcgaactgct 3660 gctgaacgtc cacgtagtgc tggtctcctt gaaaaccttg tggcaatgat aaaaagaaat 3720 tttaactctc cagatttaac gggtatatta gatattgaag atactgccga acttgtagtt 3780 aataagtttt gggatgctta cattattgac gaactttctg gtggaaatgt tacaccgatg 3840 acttcagatg cctttcacag gtggatggct aagcaggaga aaagtactat tggtcaatta 3900 gctgattttg actttgttga tttacccgct attgatcaat acaaacatat gattaaggcg 3960 caacctaaac agaagcttga tctcagtcct caagatgagt atgctgcact tcagactatt 4020 gtttatcact caaagcagat aaatgcaatt ttcggtcctc ttttttccga attaactaga 4080 cagcttttag agaggataga cagtagcaaa tttttgtttt acacccggaa aacgcccgaa 4140 cagattgaag agtttttctc agatttggat tcgacggtgc caatggaagt tctagagtta 4200 gacatttcaa agtatgacaa atcccagaac gaattccatt gtgctgttga gtacttgatt 4260 tgggagaaac ttggtcttaa tggctttctc gaagaagttt ggaaacaggg acataggaag 4320 acatccttga aggattacac cgcaggaata aagacttgtt tatggtatca aaggaaaagc 4380 ggagatgtaa ctacatttat tggcaataca gttattatag ctgcttgtct tgcgtcgatg 4440 atacctatgg ataaggtaat taaagctgcg ttttgtggag atgatagtat tctatacatt 4500 ccaaagggac ttgatcttcc tgatatccaa tctggagcga atttgatgtg gaacttcgag 4560 gcaaaattat atcgtaagcg ttacggatat ttttgcggaa ggtatattat tcatcatgac 4620 agaggtgcca ttgtgtatta cgaccctctt aaattaattt ctaagttagg ttgtaaacac 4680 atcaaatctt tggatcattt ggaagaattt agaatctcgc tgtgtgacgt aagctcttct 4740 ttaaataatt gtgcgtattt tggtcaattg aatgatgcaa ttgctgaggt ccacaagacc 4800 gcagtaaatg ggtcgtttgc gttttgtagt attgttaagt atctttccga taaaaacctt 4860 ttcagaacct tgttctacaa tggctctagt actaagggat agcatcaaaa tctctgaatt 4920 tattaattta tcagcctctg aaaaactact accgtcagct ctaacggctg tcaagtcggt 4980 acgtatttca aaggttgata aaattataag ttacgagaat gatactttgt ctgatattga 5040 tttgcttaaa ggtgtgaagt tagtagagaa tgggtatgtg tgccttgccg gcctcgtcgt 5100 cactggtgaa tggaatttgc cggacaattg caaaggtggt gtgagtatct gtcttgtaga 5160 caaacgcatg aaaagagcta atgaagcaac acttggctct tatcatacat ctgcttgcaa 5220 gaagagattc acctttaaaa ttatcccgaa ctacagtgtc accactgccg acgctcttaa 5280 aggaatatgg caagttatga caaatattag aggtgtggaa atggaaaagg gtttttgccc 5340 attatctttg gagtttgttt ctatttgcat agtgtattta aataatataa aactcggact 5400 gagagagaag attttgaacg taacagaagg agggcccacc gaacttactg aagcagttgt 5460 tgatgagttc gtggagaaag ttcctatggc tgctaggctc aagtcttttc gctctgtcaa 5520 caaaaagaaa cctagtaaca gttctaagtt tgttaatgga aaatctagac ttaatagtcg 5580 taataaatta aattatgaaa atggtgatag tgatgttggt actagtgttg tagatgatat 5640 tgtggttagt aatggtgtta gtgatattcg tattgatgat gattgtgagt catttgacgc 5700 acaatctgat tcgtattgaa tatgtcttac actattacag acccgtctaa gctggcttat 5760 ttaagctcgg cttgggctga ccccaattca ctaatcaacc tttgtaccaa ttctctgggt 5820 aatcagttcc aaacacaaca agctcgaaca actgttcaac agcagtttgc tgatgtttgg 5880 cagccggttc ctactttgac cagtaggttc cctgcaggcg ctggttactt cagagtttat 5940 cgctatgatc ctatattaga tcctttaata actttcttaa tgggtacttt tgatactcgt 6000 aatagaataa tcgaggtaga aaatccgcag aatccgacaa ctacggaaac attagatgca 6060 actcgtagag ttgatgatgc aactgtagca ataagatctg caataaataa tctattaaat 6120 gagttagtta ggggaactgg tatgtacaat caagtctcat ttgagacgat gtctggactt 6180 acttggacct cttcctaatc atatttagga aaataacgtt gatagtgttg aactatccgt 6240 ggtgcatacg ataatgcata gtggttatcc ctccacttaa atcgaagggt ttttcactgc 6300 ggatatgtag gtttcctacg gtgaatataa aacttatatc ccgttgtgta cacgatagta 6360 catagtgttt atccctccac ttaaatcgaa gggttttgtg tcacacgcgt gtaaggagtg 6420 gtcaacctta cgacacattt aaaataatgc gtccgtggtg catacgataa tgcatagtgt 6480 ttgtccctcc acttaaatcg aagggttgtg tatatggatc atgcggataa agttatactg 6540 gtgcagtata acccgttata cacgtaaaat tatgagggat tcgaattccc ccttacctcg 6600 ggtagaggcc ca 6612 //