ID AY571289; SV 1; linear; genomic RNA; STD; VRL; 6227 BP. XX AC AY571289; XX DT 14-APR-2004 (Rel. 79, Created) DT 14-APR-2004 (Rel. 79, Last updated, Version 1) XX DE Cymbidium mosaic virus strain Taiwan, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6227 RA Wang H.L., Lin W.C.; RT "Molecular sequencing and analysis of the viral genome of Cymbidium mosaic RT virus Taiwan strain"; RL Zhi Wu Bing Li Xue Hui Kan 13:0(2004). XX RN [2] RP 1-6227 RA Wang H.L., Lin W.C.; RT ; RL Submitted (11-MAR-2004) to the INSDC. RL Graduate Institute of Biology Science, National Kaohsiung Normal RL University, 116, Ho Ping 1 Rd, Kaohsiung 802, Taiwan XX DR MD5; 674739eebc828e33d5f58784cb6b1b17. XX FH Key Location/Qualifiers FH FT source 1..6227 FT /organism="Cymbidium mosaic virus" FT /strain="Taiwan" FT /mol_type="genomic RNA" FT /db_xref="taxon:12178" FT gene 74..4327 FT /gene="RdRp" FT CDS 74..4327 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q6PY94" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6PY94" FT /protein_id="AAS87218.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHKEGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFVSHLSSVSSYDDILSSNIFQHFTIPIKNKIRELVQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSPEAEDSEDDTDSVDFNLPPTHDLPPNFDPLDKGKAIIVDTGNPSTSTAPAVTFAA FT GINSSASTNISFGSFTPEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVQDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNCRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTA FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEPEVREPAAPKTHIPVENTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIHEVLNADEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDIKDLWLRAL FT SFPDWTDRAQLLKRG" FT gene 4334..5023 FT /gene="TGB 1" FT CDS 4334..5023 FT /codon_start=1 FT /gene="TGB 1" FT /product="triple-gene-block protein 1" FT /db_xref="GOA:Q6PY93" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6PY93" FT /protein_id="AAS87219.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAYPIFSHSPTLLDPSNRIFQQCITTDSVPDGAIVDEYNYKPLNYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTALLNNLFHLFITSLAPVDSLEYADPFAGDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSSLHRSHPRQGQPHH FT LRFQCQV" FT gene 5011..5349 FT /gene="TGB 3" FT CDS 5011..5349 FT /codon_start=1 FT /gene="TGB 3" FT /product="triple-gene-block protein 3" FT /db_xref="GOA:Q76SQ1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q76SQ1" FT /protein_id="AAS87220.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT gene 5204..5479 FT /gene="TGB 2" FT CDS 5204..5479 FT /codon_start=1 FT /gene="TGB 2" FT /product="triple-gene-block protein 2" FT /db_xref="GOA:O10690" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:O10690" FT /protein_id="AAS87221.1" FT /translation="MLGTRNILTTSGLPLPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILNKVAIGPWRGLSYHNNLK" FT gene 5482..6153 FT /gene="CP" FT CDS 5482..6153 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q6PY90" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q6PY90" FT /protein_id="AAS87222.1" FT /translation="MGEPTPTPAATYSTADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6227 BP; 1647 A; 1819 C; 1224 G; 1537 T; 0 other; ggaaaaccaa acctcacgtc tactccgcta tccgagcgaa atagcagccc cagcataggc 60 aatatcgcgc tccatggccc gagtacgtga tacccttgac aggctccgtg atccgtcggt 120 ccttacctca attaacgagg aagcccaccg acatatccgc cctgtccttg cctcggcact 180 cgtaaactgc ccttacgcgt tgaccgagga agaggccgac tgtctcgaaa atctcggcgt 240 gacagtcaat cccttcgcca tccaaacgca tacacatgct gcagctaaaa ctgttgaaaa 300 ccgcatgttg gaaattgttg gcacccacct tcctaaagaa ccctccacct tcatattcct 360 taagcggagc aagcttcgtt acctacgacg cgccgccaac aacaaagaca tatttcaaaa 420 ccaacacatt gagcctaaag acttattgcg ttacgatgac gagtcttgtg aagtaatgcc 480 agaatgctcc acaagcacag cctacatcag cgatgctctc catttcttga gctacgctca 540 gcttgggaaa atattccagg attctcccaa gctgaaaatt ctgctggcaa ccctggtcct 600 ccccgtggaa gccctccata ggcacccatc tctttaccct gccatctata ctttgaacta 660 ccataaagag ggctttgaat atatacccgg caatcacgcc ggaggtgcct acttccacga 720 gtactccact ctgcagtggt tgactctcgg gaaactaatt atcaacgatc ctttgaaagt 780 aaagaagccc cttactctta ctgtacagct aatagaaagt ctaggggcca accatctttt 840 acttatcacc cgaggggatc ttcgcacacc caaactgcgg acattcgcta aagataccca 900 tgttctacta ccacaaatat tccatcctaa gggtatgaat gcgaacaaac cattgtccaa 960 acgtagagct atgcagttgt ggctctacgc caaatctgtt aaagaggtga gcgaacggga 1020 tctttatgct aaggtgaggc aattgatccc gacttctgag ttagaccttt ttgaccctgt 1080 ggaggtgacc cacttggtca attacttact atttgtcagt cacctttcct ccgtatcttc 1140 gtatgacgac atcttgtcgt ctaatatatt ccaacatttt accattccaa tcaagaacaa 1200 gatacgggaa ttggtccagc tattcaccgg agcggaccaa tttaatcaac tgctcaaagc 1260 tctcgactgg caaacatttt cgtactctat gccagtagag accatccata cacgtgcggc 1320 caattatcaa gtcgctaaaa cgcttcgcat gtgcagagac ctaccatgcg atgaatatga 1380 tcgtgtaaag gatgtcctca gacagctccc tgacggagtg acgttgtttg aggaaaacga 1440 caagcaagat ccctcaagcc ctgaagccga ggactctgag gatgacactg actccgtcga 1500 ctttaacctt ccccccactc atgacttgcc cccaaacttt gatcctctag acaagggtaa 1560 ggccattatc gttgacactg gcaacccctc aacttctacg gcacctgccg tcacttttgc 1620 tgccggtatc aactcctcag cctccacaaa tatttcattt ggaagcttca cacctgaggc 1680 tgaggccacc ccccctcctc ccatggaaaa gttaccatgg gatctttgga ttcccctact 1740 ggaacaacat ggctttaaag gaaagagcaa gctgtacaag cccacgggtg aactaatctg 1800 ccccataact gaaatcaaaa cagttcccca ctgccccttt cccgataaag tccaggatgg 1860 ctgtgtgctt gcgcttaaat ctattaagcg tttcgccaca aaaatgacta tgctcagttc 1920 tcgagcttct gcctacactt ctgacattaa gaattgtagg actgggaaac tcctacccgc 1980 catgaacatg ccctggaaag cctctctcgc ctatgtcact caacatggtg acagagaaat 2040 tcctggcgtc gtgatccatg gtgccggtgg ctgtggcaaa tcttatgcta tccaaaaatg 2100 gttgagaagc tgctctgatc cttgtgcagc tactgtggta tgcccaactc tagaactacg 2160 taatgactgg ctcaacaaga tcggaagcta cgaacaaacg aatatcaaaa ctttcgagaa 2220 agctttaatt cagccagtca acaacgtagt tatctttgat gactacacca agctaccccc 2280 tgggtacatc gagaccatgg tgtaccatca ccacaacctc gacctgatca tactaactgg 2340 ggatcctatg cagagtgcct accatgaaac taacagggat gcctatatct ctttaatacc 2400 tgatgcctct gccattttta gtgagtactg tgagttcaac atcaacgcca cccaccgtaa 2460 tgtggctgaa ctcgcttgcc tcctcggcgt ctattccgaa cgccaaggca aactcactgt 2520 ttccttcagc acagccccac tttctaaagg taaagtaccc attctggtac cctccagaat 2580 gaaacaagag gcttttgctg atgtcggcaa ccgttgcatg acttatgccg gttgccaggg 2640 tctcactgcc cctaaaatcc aaattttgat agacaaccac actgcgttct gctctgaaca 2700 aacattatac acttgtctat cacgagctgt ggaccaaatc cacttcatta acactggtcc 2760 caactcgcag gctttctgga ctaaattgga atcaacgcca tacctaaaag ctttcctcga 2820 taattaccgc gaggaacaaa ctgaacggct aacatctacc gccccagagc ctgaagtccg 2880 tgagccagcg gccccaaaaa cgcatatccc tgtcgaaaat acatctggct tacgtatttc 2940 tgcacttgat ctgccggaaa agcactctcg cgagattttt aacaaggcgc atggcttttc 3000 caatgctatt cagggagatg gcgtagctcc catgttccag catcaacagg caaaggacga 3060 aacccttttc aaggctacca tagacgctag actctctata acacatcccg atgaaaataa 3120 aagagagttt gccatgaaga aagacactgg ggacgtcctt tttgtcaatt acaaagctat 3180 aatgaatcta cctcatgagc ctgttccttt tgaacctcgt ctctggaaca tctgcaaagc 3240 tgaagtgcag aacacatacc tagccaaacc cattgcaaat cttatcaatg gtaccttaag 3300 gcaatcacct gattttccag ccaataaaat agccttattc ctgaaatcgc aatgggtaaa 3360 gaaaattgag aaaattggag ccataccagt taaacccgga cagactattg catcatttat 3420 gcaagagact gttatgctgt atggcaccat ggcacgctac ctccgtaaga tgcggcaaag 3480 atatcaaccc gcacatatat ttatcaattg tgaaaagact ccggaggact tcaataaatt 3540 catacttgaa cactggtcac acaagcaagt tgctcacact aacgatttta ctgcttttga 3600 ccagtcacaa gatgctgcca tgctccaatt tgaagtcatc aaagctaggt acttcaatat 3660 ccccgaggat gttatagaag gatacatcca aattaagctc actgctgaaa tcttcctcgg 3720 gacactttcc atcatgcgcc tatctggtga agggccgacc ttcgacgcca atactgaatg 3780 ctctattgcc tacaacgcca ccagatacca tattaatgaa gacgtcaccc aagtatacgc 3840 cggtgacgac atggctatgg accatgtgtg ccctgagaag aagagcttca aagctttgga 3900 aaagaaactg aaattgacct caaaacctct ctatccaaag caaaaacctg gagactgggc 3960 cgatttctgc ggctggacta taacgcctta tggcatcatt aagaatccta agaaacttga 4020 tgcatgccta caattgcaca cccaactggg cgatgccgat aaagtcgcta ggtcatacgc 4080 actcgatgcc aaatatgctt atgatctggg cgatcgcatt catgaggttc tgaatgctga 4140 tgaaatgacc agccacttca atgttataag acagttgcac aaactgcatc aacaagatgt 4200 gctggtccca cccgagacta ccgtagccac agcggtaaag tctcaacctg acattaaaga 4260 cctgtggctc cgtgcgctta gcttcccaga ttggacggac cgcgcccaac ttttaaaacg 4320 gggttaattt ctgatggagc tagcgtactt agttagacta ttagagcata ataagttcga 4380 gcgcactaac ttgcctcttt cctcacctct cgttgtccac ggaatcgccg gcagtggtaa 4440 atccaccatt ctgaccacct tccaccatca ctacccagct taccccatat tctcacatag 4500 ccctaccttg cttgacccta gcaaccgcat cttccaacag tgcatcacca ccgattctgt 4560 gccagacggc gctatagtcg acgagtataa ttacaaacct ctaaactact cccgctgcct 4620 agctctcttc ggtgaccctc ttcagcttcc gcattcactc cagccccatt actactccag 4680 ccgcacgcac cgctacgggc ctaaactaac cgccctactc aacaacctct ttcacctttt 4740 catcacctct ctcgctcctg tcgacagcct agaatacgct gacccctttg ctggcgatcc 4800 ctctggattt accattgctg acgaggaggt gtacaacttt gtctctcagc aggttcccgg 4860 cactttgttg ccgctcgata ctgtaggttt agaatattct agtgttagct tttactgcag 4920 tgatctccga cgctgtgtcg tactaaggcc actcagcagc cttcatcgct ctcacccgcg 4980 ccaagggcaa cctcaccatc ttcgatttca atgccaggtt tagttccacc acctgaccac 5040 tccaagtcac tcttcgtcct tgctattggt ataactgtgg tctccgcatt atttgtgctg 5100 aagtcccaca cttttccgat tgcaggcgac aatattcacc gcttcccctc cggcggccaa 5160 tataaagacg gtactaagca gataaactac tgtccaccta ctcatgctag gtacccgaaa 5220 tatcctgact acaagtggct tgccgctacc gccgccatcg tcatccctct ctgcctatat 5280 atttcctacc atcctggcaa taatattcgc cgtatttgcc cttgttgcaa tacatatcac 5340 cacccctgag cccttctgta ccatacacat agacggggcg tctattacta tcactaactg 5400 ccccgatcct gcagctatat taaataaagt agccataggc ccctggcgag ggttaagtta 5460 ccacaataat ttgaaataat catgggagag cccactccaa ctccagctgc cacttactcc 5520 actgccgacc ccacttctgc acccaagttg gccgacctgg ctgccattaa gtactcacct 5580 gtcacctcct ccatcgccac ccccgaagaa atcaaggcca taacccaatt gtgggttaac 5640 aaccttggcc tccccgccga cacagtaggt accgcggcca tcgacctggc ccgcgcctac 5700 gctgacgtcg gggcgtccaa gagtgctacc ctgctcggtt tctgccctac gaaacctgat 5760 gtccgtcgcg ccgctcttgc cgcgcagatc ttcgtggcca acgtcacccc ccgccagttt 5820 tgcgcttact acgcgaaagt ggtgtggaat ctgatgctgg ccactaacga tccgcccgcc 5880 aactgggcca aggctggttt ccaggaggat actcggtttg ccgcctttga cttcttcgat 5940 gccgtcgatt ccactgccgc gctggaacct gctgaatggc agcgccgccc tactgaccgt 6000 gaacgtgctg cgcactcgat cgggaagtac ggcgctcttg cccgtcagcg tatccaaaac 6060 ggcaacctca tcaccaacat tgccgaggtc accaagggcc atcttggctc caccaacact 6120 ctctatgctc tgcctgcacc ccctactgaa taacgccaaa cttaataagg cgtgtggttt 6180 tctaaagttt gtttccacta ctggcatata tatttagcca gattatt 6227 //