ID AY563040; SV 2; linear; mRNA; STD; VRL; 7040 BP. XX AC AY563040; XX DT 28-MAR-2004 (Rel. 79, Created) DT 28-MAR-2007 (Rel. 91, Last updated, Version 5) XX DE European mountain ash ringspot-associated virus RNA-dependent RNA DE polymerase (RdRP) mRNA, complete cds. XX KW . XX OS European mountain ash ringspot-associated emaravirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RP 1-7040 RX DOI; 10.1007/s00705-004-0397-5. RX PUBMED; 15449143. RA Benthack W., Mielke N., Buttner C., Muhlbach H.P.; RT "Double-stranded RNA pattern and partial sequence data indicate plant virus RT infection associated with the ringspot disease of European mountain ash RT (Sorbus aucuparia L.)"; RL Arch. Virol. 150(1):37-52(2005). XX RN [2] RP 1-7040 RX DOI; 10.1099/vir.0.82715-0. RX PUBMED; 17374780. RA Mielke N., Muehlbach H.P.; RT "A novel, multipartite, negative-strand RNA virus is associated with the RT ringspot disease of European mountain ash (Sorbus aucuparia L.)"; RL J. Gen. Virol. 88(Pt 4):1337-1346(2007). XX RN [3] RP 1-7040 RA Benthack W., Mielke N., Buettner C., Muehlbach H.-P.; RT ; RL Submitted (02-MAR-2004) to the INSDC. RL Genetics, Institute of General Botany and Botanical Garden, Ohnhorststrasse RL 18, Hamburg 22609, Germany XX RN [4] RC Sequence update by submitter RP 1-7040 RA Mielke N., Muehlbach H.-P.; RT ; RL Submitted (01-AUG-2006) to the INSDC. RL Genetics, Institute of General Botany and Botanical Garden, Ohnhorststrasse RL 18, Hamburg 22609, Germany XX DR MD5; dc4b68153e75d46c0d163e02c8dab7d4. DR EuropePMC; PMC5552725; 28848524. XX CC On Aug 1, 2006 this sequence version replaced gi:45645337. XX FH Key Location/Qualifiers FH FT source 1..7040 FT /organism="European mountain ash ringspot-associated FT emaravirus" FT /segment="RNA1" FT /host="Sorbus aucuparia L." FT /mol_type="mRNA" FT /db_xref="taxon:1980426" FT gene 1..7040 FT /gene="RdRP" FT CDS 45..6926 FT /codon_start=1 FT /gene="RdRP" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q6Q305" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/Swiss-Prot:Q6Q305" FT /protein_id="AAS73287.2" FT /translation="MENIRKLEAQRRKEYLRAETEIRNNNVFEKDILQKFLHIVGKKQR FT HYTISSKKKEVQDIFNKCSTNPGFTKDVIDLAERILYAPPNLNQIDFAMTIVSLIEMQR FT HDDLIHKLNELLVRSGMKVISFEFKLCDHFPFTNSILTPDILFEDPYGSRYILEVKVRN FT KHTDLEHYYMRYKKVVGVHAKVGVFNLSQSGYMQHGDYKLSEKINLESDDFDDILLCVE FT LAGKIREKYIQYPQYFLYTLQSEVTNPDSFLDGFKTRLSDLSMFEEIKSGFGDYWNDIT FT YHMDNYSLIDNHDEVTEDLLNSTDDLTQYCNDLYDEFLDHSQSYSRQGKYGKTILRNSG FT LDNIIDKKNRSKYTITSKLKPSVYIPITKTIKLDTYGGSRLKFYKDAFINIKCTGDSYS FT RSAYNLVDNVFNTSSIDLLMTKDDKIDPSLYYEVLDPGFIAHLHDDQVKYKKIAKVTNI FT TSDMTILANNSFSIHCHTDQRLKDNICGYDKKHYDSTQKAKECLDFSNSSLLLPSLGVH FT LSAIFKSEHHAGVYWNDLVTLGTDNLNHMTSDIPEEAQTKFLEHLYNSHIIFKAIISLN FT TINSHKFRLLQSPDPGTIIILLPNSDGLKGAPLRYFVVSILQKQDNDSIEANKLLGIYH FT SHTESKKYKIMLSKVISLDITRLKLLSNSFVKYSLLISYYSQFKKSLKFDTHMLSWMLS FT QVTTIASLSITDVYKNFIMAIYSDYSNIDDLINDKLECRPRTLGHVFVMKHLFQGITSA FT VEQLGKINKNKLIADVNDEGELISTGFDPNLRLKLPISQLSTNNPKEIIHESFILFYLG FT NKGLHGSPQELLNLYYTPMQFESEYTKMMTDCGLYCQELGNNGNLSFSFQAMFLTSKVA FT YAKLLNNTDEIRRSLVKEMKMDEPIMSIKQFSSTKSMVSNSVPDMSIKDCNLNKNIDVI FT QLERYIDTSLISDPMKYITLMNNSIESINQERLLIYKDKLNKGIVLLPKLILTTFKGKS FT FIGLENHYYTKLVSGDYIKQTNTKVFDEFYRLTDEIQEEKLRGFYKGYITEGDLLVRIF FT NKDQRTTDDREIYTGNAQVRLCLYPLEMTFKSICKKIPEEAITISGDQKQRKLLEQRLA FT LIKTKRQFNKSGYKTEIYSVSSDASKWSARDLLPKFIISIATNPYLTSDEKYFLVYLLV FT RYYDKKIVLTDSAFSNALRFSREDINGKYEEMTNNFTQNWFNVRSNWLQGNLNMTSSFV FT HHCSTIMTDTLLSISAKHNGFEAVMTSMVHSDDSTYDFLIAKNSKTSSYINNEANMGRF FT IISLITYSNKKHCITLNEKKTYISTFYKEFLSTTIVSNELFFFYMADLMPISSDTSYKS FT PLEDLASYTGYINNSFSHACPIQILKCAITLLNHLTLSTYNMQYTSEKNPRCNIPNSTD FT LPIQIYPRYKLPLSLAGCIPYYSSDAYNILDDIIKTLEKNKVIKNSLLEDVIDDETLDE FT YITLVNKQKPEYAKYIQACLLTMDYTQYERDDEDPYNIVDYDLSQKSIINVASINKGSR FT IKKTYTYKKYLENETDIRLTSCVNPMWCISKPKDEVLIKNPILANYMNPNFKDSLIFSK FT SALDYGRRIIGSNKSMDTLSSHAFEKEKKQGIKTIYKKLDDKISTVEISKQSLQRFLEC FT IYSVIKKSLVALQVYYSKVQVLVKTRPEFTKVIMPRSVYAEEYGKNSNTSMVENLLVEQ FT YCEIEQVDSKVEKFISFCKHVLQRCGDIKIYRDPEDIDDDFRKYIEFKYTLKDATMGLI FT QPHQHLAEYAFDVYNNKLIFQGLMVRYYIDICETISNPSYNIPSYTSPNSIIMTLDSLM FT KRDEISSKIYISHIRTNRFDEYWLSRFGMYVYENYFVKYKLGYRIKIAANEKLMPTMKK FT VRNLREPFKFICSLVANDPSLFIQMTESPDFQISGWKYSDIIAEMKSTTDFSYNLFLYM FT MNEINFQTLMRVMNLNRRVWNHWLMKTDSEPSDPNASIALYMYQSTVVKVQTKTIGGGV FT TFSMLLLRHGMQHRQAFDEISKKIASDYAPQLRIANITPQTSFGRLQFCVNEYGRTVKP FT GSYRSSCICNVNIAALTDLKPDIAYKENTINQIVTIISPTFEGEFVFKLNTYCDSEYYT FT CVMLENLDLNRVMILDHLCRGKYLIENPEYFTEISDQITPGACLALFSNNVNNKLWSNT FT IDTSKFAKLVHIGNYLKTEHEASIVTKLCDSLVAICALNGIDHTLSLKPDNFIKSLRQY FT KLSYGFHEEFYNNYKKNEREPYTELIMAIASTAGDPFQKVILAIITIFKAYTDLFISYK FT TDEVEF" XX SQ Sequence 7040 BP; 2587 A; 1101 C; 1165 G; 2187 T; 0 other; agtagtgaac tcccttaata tacaaaaact caaactcaac tctcatggaa aacataagga 60 aacttgaggc acagcgaagg aaggaatatt tgagagctga aacagagata agaaacaaca 120 atgttttcga aaaggacata ttgcagaagt ttctacatat tgttggcaag aaacagaggc 180 attacactat ttcttcaaaa aagaaggaag ttcaggatat ttttaataaa tgttcaacaa 240 atcctgggtt tactaaagat gtgattgatc tagctgagag gatactgtat gcaccaccca 300 atttgaatca gattgatttt gcaatgacaa ttgtttccct tatagagatg cagaggcatg 360 atgacttgat tcacaagctg aatgaacttt tggtgaggtc tggcatgaaa gtgatatcat 420 ttgaatttaa gttatgtgat cacttcccat tcacaaacag tattctgact cctgatatac 480 tgtttgaaga tccatatggt tctcgctata tacttgaagt taaagtgagg aataaacata 540 cagatttgga gcattattac atgagatata agaaagttgt gggtgttcat gccaaagttg 600 gtgtattcaa tttgtcacag tctggttaca tgcaacacgg cgattataaa ctttctgaaa 660 aaatcaatct tgaatcagat gattttgatg atattttgct ttgtgttgaa ttggctggta 720 aaatcaggga gaaatatata caatatccac agtatttcct ttacacgcta caatctgaag 780 tcacaaatcc agatagtttc cttgatggct tcaaaactag attatctgat ctttcaatgt 840 ttgaagaaat taagagtggt tttggtgatt attggaatga tataacatat cacatggata 900 attacagttt gattgacaat catgatgaag ttactgaaga tcttctaaat tccactgatg 960 acctaacaca gtattgcaac gatttgtatg atgagttcct ggatcatagt caatcttact 1020 ccagacaagg taagtatggt aagacaatac tgaggaattc aggtcttgat aacataattg 1080 acaaaaaaaa cagatcgaag tacaccataa cttcaaagct gaaacctagt gtttatatac 1140 caataacaaa aaccataaaa ctggacactt atggtggttc aaggttgaaa ttttacaaag 1200 atgccttcat taatataaag tgcactggtg attcttattc aaggtctgca tacaatctgg 1260 ttgataatgt ttttaacact agtagcatag acctgcttat gaccaaagat gataaaattg 1320 atcctagttt atactatgag gtgctagatc caggctttat tgctcatttg catgatgatc 1380 aagtcaaata taagaagatt gcaaaggtga caaatatcac aagtgacatg actattcttg 1440 caaataattc attctcaatc cattgtcata ctgatcaacg gttgaaagac aacatttgcg 1500 gttacgataa aaaacattat gactccacac aaaaagctaa ggagtgctta gatttttcca 1560 acagctctct tctgttacca tcactgggcg tacacctttc tgcaatattt aaatctgaac 1620 accatgcagg agtttattgg aatgaccttg ttacattggg aactgataat cttaatcaca 1680 tgacatcaga catcccagaa gaagcacaaa caaaattttt ggagcatctg tataattcac 1740 acataatatt taaagcgatt atttcactga atacaataaa ctcacacaaa tttcgtttat 1800 tacaatcacc agatccagga accataataa tactacttcc aaattctgat gggttgaaag 1860 gtgccccatt aaggtatttt gttgtttcca tattacaaaa acaggacaat gattcaattg 1920 aagctaacaa gctacttggg atctatcatt ctcatacaga gtcaaaaaaa tacaagatta 1980 tgttgtccaa agttatttca ttagatataa ccaggttaaa gttgctttca aattcatttg 2040 taaaatactc acttttgata tcatattatt cacagtttaa aaaaagtcta aaatttgaca 2100 ctcatatgct atcatggatg ctttcacaag ttacaactat agcttcactt tcaataactg 2160 atgtgtacaa aaatttcatc atggccatat attcagatta ttcaaacata gatgacctaa 2220 ttaatgacaa gcttgaatgt cgaccaagaa cattgggtca tgtgtttgtt atgaagcatc 2280 tgtttcaggg aataactagt gcagttgaac agttaggtaa aataaacaag aacaagctga 2340 tagcagatgt taatgatgaa ggtgaactga tatctactgg ttttgatcca aatcttagac 2400 tgaagttgcc aataagtcaa cttagcacga ataatcccaa agagatcata catgagtcct 2460 tcatattgtt ttatcttgga aataaaggtt tacatggttc accacaagag ctgttaaatc 2520 tgtattacac accaatgcaa tttgagtctg agtacacaaa aatgatgact gactgtggac 2580 tctattgtca ggaattagga aataatggta atctatcatt ctcatttcaa gcaatgtttt 2640 taacttccaa agtggcatat gcaaagttat tgaacaacac tgatgaaata aggaggtcac 2700 tagttaaaga gatgaaaatg gatgaaccaa taatgtcaat aaaacagttt tcatcaacaa 2760 aatctatggt ttcaaatagt gttcctgata tgtctattaa agattgcaat ctgaacaaaa 2820 acattgatgt tattcagctt gaaaggtata ttgacaccag tttaatctca gacccaatga 2880 agtatatcac tttaatgaac aattctattg agtcaataaa tcaagaaaga ttattgatat 2940 ataaagacaa attgaacaaa ggtattgttt tattgcctaa actgatatta acaactttca 3000 aaggaaagag ttttattggt ctggaaaacc attattacac caagttagtt tcgggcgatt 3060 acattaaaca aaccaatact aaggtattcg atgagtttta tagattgaca gatgaaattc 3120 aagaagaaaa attaagaggg ttttataaag gatatataac agaaggggat cttttggtaa 3180 gaatctttaa taaagatcaa aggaccacag atgatcgtga aatctacaca ggtaatgcac 3240 aagttagact ctgtttatac ccacttgaaa tgacattcaa atcgatatgc aaaaagatac 3300 ctgaggaagc tataactatt tctggtgatc agaagcagag gaaattactt gaacaacgtc 3360 ttgcattgat aaaaactaaa agacaattta acaagtcagg ttataaaact gagatttatt 3420 cagtttcatc agatgcatca aaatggtctg ctcgagattt gttaccaaaa ttcataataa 3480 gcattgcaac taatccatac ctcacatcag atgagaaata tttccttgtg tatttattgg 3540 ttaggtatta tgataaaaag atagtgttaa cagattctgc ctttagtaat gctttaagat 3600 ttagtagaga agatatcaat ggtaaatatg aagagatgac taacaatttt acacaaaact 3660 ggtttaatgt tagatctaat tggctacagg gcaatctcaa catgacctca tcatttgttc 3720 atcattgtag tacaattatg actgatacgc ttttatcaat tagtgctaaa cacaatggat 3780 ttgaggctgt catgacatct atggtacact ctgatgattc cacttatgat ttcctaattg 3840 ctaaaaattc aaaaacaagt tcatatataa acaatgaagc caatatgggt agatttataa 3900 tttcgctgat aacatactca aacaagaaac actgtataac tttaaatgaa aagaaaacct 3960 atataagcac attttataaa gaattcttat caacaaccat agttagtaat gagctatttt 4020 tcttttacat ggctgatctt atgcccatat ctagcgacac tagttacaag tctccattag 4080 aagatttggc atcttacaca ggatacataa acaactcatt ctcacatgca tgtcctattc 4140 aaattttgaa atgtgcaatc actctcctaa atcatctaac attatcaaca tataacatgc 4200 aatatacttc tgagaagaat cctagatgta atataccaaa ttctactgat ttgcctatac 4260 agatttatcc aagatataaa ttaccattat cattagctgg ttgtattcca tattattcat 4320 cagacgcata taacatatta gatgatatca tcaaaacttt agaaaaaaac aaggttatta 4380 aaaattcatt gcttgaagat gttatagacg atgaaaccct tgatgaatat ataacacttg 4440 tgaataagca aaagcctgaa tatgccaaat atattcaagc ttgcctattg actatggatt 4500 atactcagta tgagagagat gacgaagacc catataatat agttgattat gacctaagcc 4560 aaaaaagtat aataaatgta gcatcaatta ataagggttc tagaattaaa aagacttata 4620 cttataaaaa atatttagaa aatgaaacag atattagatt gactagctgt gtaaatccca 4680 tgtggtgcat atcaaagccc aaagatgaag tcttgataaa aaatccgatt ttggcaaatt 4740 acatgaatcc aaactttaaa gattcactaa tattttcgaa atctgcactt gattatggca 4800 gaagaataat tggatcaaat aaatcaatgg atacactaag ttcacatgca tttgaaaaag 4860 aaaagaaaca gggtataaaa actatctata agaagcttga tgataaaata tctactgttg 4920 aaattagtaa acaatcccta caaagattct tagagtgtat ttattcagtg ataaaaaaat 4980 ctctggtcgc acttcaagta tactatagca aagtacaggt attagttaaa actcgacctg 5040 aatttacaaa ggttattatg ccaagaagtg tatatgctga agaatatggt aaaaattcca 5100 acacatctat ggttgaaaat ttattggtgg aacagtactg tgagatagag caagttgatt 5160 caaaggttga aaaattcata tcattctgca aacatgttct gcagcggtgt ggtgatatta 5220 agatctatag agatcctgaa gatattgatg atgatttcag gaaatatatt gaatttaaat 5280 acacattaaa agatgcaacc atgggtctaa ttcaacctca tcaacatttg gcagaatatg 5340 catttgatgt gtacaataac aagctaatat tccaaggatt aatggtcagg tattatattg 5400 acatctgtga aacaatatca aatccaagtt ataacatacc tagctatact tctccaaatt 5460 ccatcataat gacattagat tctttaatga agagagatga aatatcatca aaaatataca 5520 tatcacatat aagaaccaac aggtttgatg aatattggtt gtcaagattt ggtatgtatg 5580 tgtatgaaaa ctattttgta aagtacaagt tgggatatag aattaaaata gccgcaaatg 5640 aaaaactaat gccaacaatg aagaaagtaa ggaatttacg tgaaccattt aaattcattt 5700 gttctctagt tgcaaatgat cctagtttat tcatccaaat gactgaatca cctgatttcc 5760 agatttcagg ttggaaatac tctgatataa ttgctgaaat gaagagcaca acagatttca 5820 gctacaatct atttctttac atgatgaatg aaataaattt ccaaacatta atgagagtca 5880 tgaatctgaa caggcgtgtc tggaatcatt ggttgatgaa aactgacagt gaaccttcag 5940 atccaaatgc ttcaattgca ctttatatgt atcaatcaac agttgttaaa gtccagacca 6000 aaacgattgg tggtggtgtc actttttcga tgctattatt gagacatggc atgcaacata 6060 gacaggcatt tgatgagatc tctaaaaaaa tagcttctga ttatgcccca cagttgagga 6120 ttgcaaacat cactcctcaa acttcttttg gtcgtttaca attttgcgtg aatgagtatg 6180 gaagaacagt taaaccagga tcttatagat cttcgtgtat ttgtaatgtt aatatagcag 6240 ctttaactga tcttaaacca gacattgcct ataaagaaaa caccataaat cagatcgtaa 6300 ctataatcag tcccacattt gaaggagaat ttgtattcaa gttgaataca tattgtgata 6360 gcgaatacta tacctgtgtt atgttagaga acttagattt aaacagggta atgatattgg 6420 accatctgtg cagagggaag tatttgatcg aaaacccaga atatttcact gagatatcag 6480 atcaaataac acctggagca tgcttagcac tattttcaaa caatgtaaat aacaaattgt 6540 ggtcaaacac aatagataca tctaaatttg caaagcttgt tcatattggc aattatctca 6600 aaactgaaca tgaagccagt attgtgacga agttatgtga ttcattggtt gctatctgtg 6660 ctctgaatgg tatagatcac actctcagtc tgaaacctga caatttcatt aaatcattaa 6720 gacaatacaa gcttagctat ggctttcatg aagaatttta taataattac aagaagaacg 6780 aacgtgaacc atatactgaa ctaattatgg ctattgcatc aacagctggt gacccatttc 6840 agaaagtcat tttagcaatt ataacaatct ttaaagcata tacagattta ttcatttcat 6900 ataaaactga cgaggttgaa ttttaaactc atgtgattta tttgattcta attaagaacg 6960 cacttaatgg tgtgactatc cttatatttt gaaatttaaa gtattttgct gatttgattt 7020 aattaaggga gaacactact 7040 //