ID AY561500; SV 1; linear; genomic RNA; STD; VRL; 5310 BP. XX AC AY561500; XX DT 23-MAR-2004 (Rel. 79, Created) DT 24-MAR-2005 (Rel. 83, Last updated, Version 2) XX DE Thielaviopsis basicola dsRNA virus 1, complete sequence. XX KW . XX OS Chalara elegans RNA Virus 1 OC Viruses; Riboviria; Totiviridae; Victorivirus. XX RN [1] RP 1-5310 RX DOI; 10.1016/j.virusres.2004.10.011. RX PUBMED; 15826915. RA Park y., James D., Punja Z.K.; RT "Co-infection by two distinct totivirus-like double-stranded RNA elements RT in Chalara elegans (Thielaviopsis basicola)"; RL Virus Res. 109(1):71-85(2005). XX RN [2] RP 1-5310 RA Park Y., James D., Punja Z.K.; RT ; RL Submitted (27-FEB-2004) to the INSDC. RL Biology, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A RL 1S6, Canada XX DR MD5; 43eea957d130e4d7b3d7fd38b2fc8419. DR EuropePMC; PMC3597494; 23516364. DR EuropePMC; PMC3659425; 20976609. DR EuropePMC; PMC3668124; 23385326. XX FH Key Location/Qualifiers FH FT source 1..5310 FT /organism="Chalara elegans RNA Virus 1" FT /host="Thielaviopsis basicola" FT /mol_type="genomic RNA" FT /isolation_source="strain CKP" FT /db_xref="taxon:267285" FT CDS 329..2641 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6Q425" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q6Q425" FT /protein_id="AAS68035.1" FT /translation="MEATSLNHFLSGVIAAPKGGRLAEDSAFRRYRAHVRTTATIGGNT FT DARNAFIRYEVGRSSGKRGQLLAAPPDDSRRIEASYPTNAVLAEDFLGLAKKYSNFSAQ FT FQFSSLAAVAERLAKGLAVHATVADVDSVALRGGAPLIVAGLGTYDGPINSLISSVFIP FT RLVNNVLTGDVFSVLANAIAGEGASIATDIAEIDPSTRQPVIPEVDGDGFAKAATEALR FT IVGANMAQSDQGLLFSLAVTRGIHSVVSWLPTAMKAALLGICCVWTFQCPFVGFITGSK FT LHGPPSLLSTVSRSVLLCRCHCTDPAAAVAPSDPGENYNGEWFPTFYSGTKGGDPTVRP FT GGDCPGNSETSGRIRSQLLADCEKFFRNYIPALGRIFGLTGSPNLAVTVAVGMSRFLHA FT DPRHLRYASVAPWYWIEPTSLLPSDFLGSVAEMNGSGSFGGKDSTKTKLAWEDIELAGD FT RDTTFSAYRAKFLSPRRAWFMAHWNGHPDNGLGCIRLRQADPNGFIHPGRGTSGADLRD FT RLEDDAPISDYLWDRGQSPFCAPGELLNLGSTIGFLVRHVTFDDDGIPTTEHVPTSREF FT LDTTVTIEVGRPLSISIGKSNCPDSKARRARTRATIELGAASRRARAFGSAAVAEMPTL FT STAPRALTFAPSRLMVKDTGGGAGSSRHGADSGGSGADDAARKADGVPVRATAHNQPVR FT FPTLANPTGPTRSSAAPAAAARDQSAGGPSVDIVRSGGDAASEVGSDVAPAPAPGVESG FT VVSSSVAAPTNEGRNDV" FT CDS 2619..4067 FT /codon_start=1 FT /product="truncated RNA-dependent RNA polymerase" FT /protein_id="AAS68036.1" FT /translation="MRAETMSRYEEFGHLGKYLSDLLTEFNECLPPLPGTDLMEHLSAL FT TWAAPALMDRHVALPAAVSLLLLEFPLQMDYKPEFAVHLALHSFDFSFVGQPFDFNVFN FT NDCRRCSQNAPASCKGNKDPAKGCEHRRTAAYRSKRKLGLQSKGYYSWLGHRAASDSIF FT RDTLFPKKNFGAASVKVNVHLGPLLRAVMFELGSARLGELLSLLEAGMYADVVCSYILY FT ALTLEHHIGSRGVHIAAAMVRQPANAKGLSNACKALGLNATFPGAMLVEGISLQGRGCK FT PVDLADELYKRTDPVGVQEQVLPLSDDLRRAIDATIEHELPVGELPDMEEWWSSRWLWC FT VNGSQNRSSDAALGLDHVPSDLLGSQRYRRMAAEEVSLNPIYAWDGYTEVSFSEKLECG FT KNRAIFACDTRSYFGFSYLLGEVQKRWRNSRVLLDPGKSGYLGLARRLLRGSVRGGVNL FT MLDYDDFNSHHSIETMKYVFLKTA" FT misc_feature 4071..5246 FT /note="putative RNA-dependent RNA polymerase open reading FT frame" XX SQ Sequence 5310 BP; 1076 A; 1328 C; 1465 G; 1441 T; 0 other; cgaaaaacaa gcgatgaaca gaacgtgccc cagctcttac cgtccctgtt tttctgggtt 60 gcgcacctcc atccgggtgc gtgcttccgt agacatctaa ttttaaccga attaggcaag 120 tccggtccac gtggaagtgg gaaatgttat gctactctgt gtcttccaaa cactaggttg 180 tccgcggctc cgaaagaagc tactcgggac cgaaaaggcg ttagcagtat gtggtaggag 240 ggaggcggga gaccgctccg ttgatcatca cattctgttc tcgacggcat aactttacac 300 ttttaaaaca ctttaaaccg ctgcttccat ggaggctact tctcttaacc attttttgtc 360 tggtgtcatc gccgccccta aaggtggacg tttggccgaa gactctgctt tccgcaggta 420 ccgtgcccac gtccgcacca ccgccactat tggcggtaac acggacgccc gtaacgcgtt 480 catccgctac gaggttggac gctctagcgg taaacgcggc cagctacttg ctgccccccc 540 ggacgactct cgtcgtattg aggcgtccta cccgaccaat gccgtgctgg ccgaggactt 600 tctgggactc gcaaagaagt attcgaactt ctctgcccag ttccagtttt cgtctctggc 660 cgcagtcgct gagcgtctag ctaaaggcct cgctgtccat gcaaccgttg ccgacgtgga 720 ttctgttgcg ctgcgtggtg gtgcccccct gattgtggca ggtcttggca cttacgacgg 780 accgatcaat agcttgatca gttcggtttt tatccccaga ctggtcaaca acgtgttgac 840 tggtgatgtc ttttccgtgc tagccaacgc gattgccggg gaaggtgcct ccattgcaac 900 cgacattgcc gagatcgacc cctccacccg ccagcctgtc atacctgagg ttgatggaga 960 cggtttcgct aaggcggcta ctgaggcact ccgcatcgtt ggagctaaca tggctcagag 1020 tgaccaaggt ttgctgttct cgctcgctgt aacccgtggc atccactcgg ttgtgtcgtg 1080 gttgcccaca gcgatgaagg cggcattact agggatctgt tgcgtgtgga cgtttcagtg 1140 tccatttgtg ggattcatta ctggctcgaa gttacacggg cctccgagtc tcttgtccac 1200 agtatcccgc agtgtgctgc tttgtagatg ccattgcacc gaccccgctg ccgcagttgc 1260 tccttctgac ccgggtgaaa actacaacgg tgaatggttc cccaccttct actctggtac 1320 gaagggcggt gatcctactg tgcgtccggg tggggattgt cctgggaact ccgagacttc 1380 tggccggatt cgctctcagc tacttgctga ttgcgagaag ttctttagga actatattcc 1440 agccctcggt cgtatctttg gactgactgg ttcgcccaac ctggcagtca ctgtcgctgt 1500 tggaatgagt cggtttcttc acgccgatcc gagacacctc cgctacgctt ccgtagctcc 1560 ttggtactgg atagagccaa cttctttgct gccgtctgat tttcttggat ctgtggccga 1620 gatgaatggc tctggtagtt ttggtggtaa ggatagtacc aagacgaagt tagcctggga 1680 ggatatagag ttggcgggtg accgtgacac tactttctcc gcctacaggg ccaagtttct 1740 gtcgccgcgc cgtgcttggt tcatggctca ttggaatggc caccccgaca acggccttgg 1800 ttgcatccgc ctccgtcaag ctgatcctaa cggatttatt catccggggc gtggcacgag 1860 tggcgctgat ttgcgcgacc gcttggagga tgacgctcct atctccgact atctgtggga 1920 tcgtggtcag agtccgtttt gcgctcctgg tgagctgcta aatctcggct cgactattgg 1980 tttcctcgtc cgtcatgtaa cttttgatga tgatgggatt cccactactg agcatgtccc 2040 aacgtcccgc gagttcctgg acactactgt tacgattgag gttggcagac ctttgtccat 2100 ttcaatcggc aagagtaact gtccagactc aaaggccagg cgcgctagaa ctcgcgccac 2160 gatcgagttg ggcgctgcgt cgcgccgtgc tagggctttt ggttcggccg ctgttgccga 2220 gatgcctacg ctgtctacgg cacctcgcgc attgactttt gctccgtcgc gtctgatggt 2280 caaagacact ggcggcggtg ctggtagctc cagacatggc gctgattctg gcggcagtgg 2340 ggccgatgat gctgctagga aagcagatgg agtgccggtt cgggcaacag cgcacaacca 2400 acctgtacgc ttcccgacac tcgccaaccc cactggccct acgcgttcct cggctgcgcc 2460 tgctgctgcc gcccgcgacc agtcggctgg tggtccgtct gtcgatattg tgcgcagtgg 2520 tggtgatgcc gcgtctgaag tcggcagtga tgtcgccccg gcgcccgccc ctggtgtaga 2580 gtctggtgta gtatcttctt ctgtggctgc ccccactaat gagggccgaa acgatgtcta 2640 gatacgagga attcggccat cttggcaagt acttgagcga cttgctgact gaattcaatg 2700 aatgcttgcc ccccctacct ggtactgact taatggaaca cctctctgcc ctgacttggg 2760 ctgcgcctgc tctaatggat agacatgtgg ctttgcccgc cgccgtgtca ctacttctgt 2820 tagagttccc attgcagatg gactacaaac ctgaatttgc tgtccacctt gctttacact 2880 cttttgattt ttctttcgtt gggcaacctt ttgattttaa tgtttttaat aatgattgtc 2940 ggcgttgctc gcaaaatgca ccagcgtctt gcaaaggcaa caaggatcct gctaagggat 3000 gtgagcatag acggactgcg gcctatcgta gtaagaggaa actaggcctc caaagcaagg 3060 gttactactc ttggctgggg caccgtgctg cgtctgactc gatttttagg gataccctgt 3120 tccccaagaa aaacttcggc gccgccagtg taaaggttaa cgtacacctg ggccccttac 3180 tccgcgcggt tatgtttgaa ctaggttccg cccgtttagg tgaattattg tctttgttag 3240 aagccgggat gtatgcagac gttgtatgtt cttacatact atacgcactg acgttagagc 3300 accacatcgg tagtcgtgga gttcatatag ccgccgctat ggtcagacaa cctgccaatg 3360 caaagggttt aagtaacgcc tgtaaggctc tgggccttaa tgctactttt cctggcgcga 3420 tgttggtaga aggcatatcc ttacaaggac gtggctgtaa accagttgac ctggcagatg 3480 agctatacaa gcggactgat ccagtgggtg ttcaggagca agtgctcccg ttgagtgatg 3540 atttgcggcg agcgattgat gcgacgatag agcatgaact gcctgtgggc gagttgcctg 3600 atatggagga gtggtggtca tcgaggtggt tgtggtgtgt taatggtagc cagaacaggt 3660 ccagtgatgc tgcattagga cttgatcacg tccccagtga tttgcttggt tctcagagat 3720 accggcgaat ggctgctgaa gaggtcagtc ttaatcctat ttacgcctgg gatggataca 3780 ccgaggtttc gttcagtgag aaactcgagt gtgggaagaa tcgtgctatt tttgcttgtg 3840 atacgcgttc gtattttggt ttttcgtatt tgctagggga ggtacagaag agatggagaa 3900 actctcgagt tttgttggat ccagggaaaa gtggttacct cggtttggca aggcgtctgt 3960 tgcgcggttc ggtacgtggg ggtgttaact taatgttgga ctatgatgat ttcaactctc 4020 atcactctat agagacgatg aagtatgttt ttctgaagac ggcctaacgt atgaatgccc 4080 cttcctggta tacggagaaa attgttagtt cttttgacaa gatgtggatc gtcagaggta 4140 gtgaaaggtt acacgtcctc ggcactttga tgagtgggca tcgcggtact acacacatta 4200 attcagtact gaatgctgct tacataagga tggccttggg taacgcgtat tacgacaaaa 4260 tactatcact ccacacaggt gatgacgttt acatgcgcct tgacacttta ggtgactgtg 4320 tccgtgtgtt gcgtgcttgt catggcgctg gctgcaggat gaatccatct aagcaatcaa 4380 tcggttatca ccgggctgag tttttaagaa tgggtgtcaa ctctcagtat gctgtgggat 4440 acttgtgccg tgcgctgccg tcactcgttt gtggtaattg ggttggagcg gggagtgacg 4500 atcagctgga actggcgagg tcactggttg gttctgtgcg gggtgtgatt aaccgtggta 4560 ttccacgtat atgtgttcgt ttgcttgcac gctctttaag cgctttccat cgctttaaac 4620 tgggactcgc gatcgacctc ttggagggat ctgtatccat agagggatca ccatgttggg 4680 cgcgtgataa taagatccgt aatgtctgtc cgagacttat agaaccacct gataaaatag 4740 gtatcggaat agattggggt aggtacgcta cgcgtgactt cttgaccaac cacctctcac 4800 ccgtagaggt tatggcgatc aaggcgtctg gagttaaccc tgagttgatc atgttgcagt 4860 ctagttattc taaaggcgtg caacggagag ctcatgacaa aaacgtcagt ttgggaacac 4920 tactggatac taagaacgtc aaaactaggg ttgttcacgg ggttgcgctt gctggagact 4980 tggtgtctag acaaactgaa aagggcgtct tttcaatgca ccctgttctc cacctgctta 5040 aaaatgcctt gagtgacagc gacttacgct cgctcctggc ttctgtggga atcgatgctg 5100 gtcgtcgtga cccccgagtc gtctgcttcg gtccggatag caaatctgtc aatattgttg 5160 gtactttgcc ttactcggat gctgcttcgc tcgctaagag gacaaacagt gatactatag 5220 gagtgtcgct gccagtgtat ctttagatac tgcctctaaa ataccaccct taattgggtg 5280 cgacttattg gtcccctcgg ggacccatgc 5310 //