ID AY548948; SV 1; circular; genomic DNA; STD; VRL; 2925 BP. XX AC AY548948; XX DT 12-APR-2004 (Rel. 79, Created) DT 30-APR-2014 (Rel. 120, Last updated, Version 2) XX DE Beet curly top virus isolate spinach 3, complete genome. XX KW . XX OS Beet curly top virus OC Viruses; Geminiviridae; Curtovirus. XX RN [1] RP 1-2925 RX PUBMED; 18943911. RA Baliji S., Black M.C., French R., Stenger D.C., Sunter G.; RT "Spinach curly top virus: A Newly Described Curtovirus Species from RT Southwest Texas with Incongruent Gene Phylogenies"; RL Phytopathology 94(7):772-779(2004). XX RN [2] RP 1-2925 RA Baliji S., Black M.C., French R., Stenger D.C., Sunter G.; RT ; RL Submitted (17-FEB-2004) to the INSDC. RL USDA-ARS, University of Nebraska, 344 Keim Hall, Lincoln, NE 68583, USA XX DR MD5; 9d61757423cadec52604a78ca9b47121. DR EuropePMC; PMC2902183; 17532021. DR EuropePMC; PMC3066396; 21193937. DR EuropePMC; PMC3818925; 19198754. XX FH Key Location/Qualifiers FH FT source 1..2925 FT /organism="Beet curly top virus" FT /isolate="spinach 3" FT /mol_type="genomic DNA" FT /country="USA" FT /db_xref="taxon:10840" FT gene 269..535 FT /gene="V3" FT CDS 269..535 FT /codon_start=1 FT /gene="V3" FT /product="V3" FT /note="movement protein" FT /db_xref="InterPro:IPR009997" FT /db_xref="UniProtKB/TrEMBL:Q6QBQ2" FT /protein_id="AAS86151.1" FT /translation="MMVCLPDWLFLLFIFSILLQSGTNFYGTFQSGSISRKLSCLASRF FT DELFLKVQQVVYTRYPSRDRTVDTRRRRGLSAIPEGSEEVTEA" FT gene 345..701 FT /gene="V2" FT CDS 345..701 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /note="ss-dsDNA regulator" FT /db_xref="InterPro:IPR009931" FT /db_xref="UniProtKB/TrEMBL:Q6QBQ1" FT /protein_id="AAS86152.1" FT /translation="MGPFRVDQFPGNYPALLAVSTSCFLRYNRWCILGIHHEIEPLTLE FT EGEVFLQFQKEVKKLLKRKCNFARKCALYEEIYKKYVSNVAEEKGTQVPDCMAEEEEDD FT DFQEVSMEETCAKE" FT gene 565..1329 FT /gene="V1" FT CDS 565..1329 FT /codon_start=1 FT /gene="V1" FT /product="capsid protein" FT /db_xref="GOA:Q6QBQ0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q6QBQ0" FT /protein_id="AAS86153.1" FT /translation="MRKYTRNTYQMSQKRKAPKFQTVWPKKRKTMTSKKYQWKRPVQKN FT RSLKLKMYDDMLGSGGIGSTISNNGMITMLNNYVQGIGDSQRSTNLTVTKHLKFDMALM FT GSSGFWETPNYMTQYHWIIVDKDVGSVFPDKLDTIFDIPPNGQAMPSTYRIRRDMNERF FT IVKRKWTTHLMSTGTAYGGRDTYKGPSMPNYKKAMNINIRNLNIRTVWKDTGGGKYEDV FT KENAIIYVVVNDNTDNTNMYATLFGNCRCYFY" FT gene complement(1344..1754) FT /gene="C3" FT CDS complement(1344..1754) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /note="replication enhancer protein" FT /db_xref="GOA:Q6QBP9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6QBP9" FT /protein_id="AAS86156.1" FT /translation="MNVIRDFRTGDPITLQQATRAVQVASVPNPLYIKLLWFQRYGPVY FT QTKVQIRFNHNLRRFLNLHKCWIDLTITGSHRTLTGDRFLRVLKRQLQLAITRRETISI FT NIVVNILEYILYDVFNFVNSVIQDTSIAMNLY" FT gene complement(1441..1884) FT /gene="C2" FT CDS complement(1441..1884) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /note="pathogenesis enhancement protein" FT /db_xref="GOA:Q6QBP8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6QBP8" FT /protein_id="AAS86155.1" FT /translation="MKRLSPGRYRIQPSQKSGVLSLIKLQKRPKKVILPCKCHFTIHHE FT CHQGFSHRGSYYSPTGDQSSPSGFSTESTIHQTPMVPEVWTSIPDEGPDQIQPQPPAIL FT ESSQVLDRFDDHWLTQDIDWRSFLESLETPTPVGYHKEGNDLY" FT gene complement(1775..2839) FT /gene="C1" FT CDS complement(1775..2839) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /note="replication initiator protein" FT /db_xref="GOA:Q6QBP7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6QBP7" FT /protein_id="AAS86154.1" FT /translation="MPFYRKAKNYFLTYPQCSISKEEALEQLLAISTPSNKKYIRISRE FT LHDNGEPHLHALIQFEGKVQIRNARYFDLQHRSSSKQFHCNIQGAKSSTDVKSYVAKDG FT DYIDWGEFQIDGRSARGGQQTANDAAAEALNAGTAAEAMQIIREKLPEKYIFQFHNLKP FT NLEAIFLPPPEIYKPPFPLSSFTRVPEVIQEWADSYFGVDAAARPFRYNSIIIEGDSRT FT GKTMWARSLGPHNYISGHLDFSLKTYSDDVLYNVIDDVDPNYLKMKHWKHLIGAQREWQ FT TNLKYGKPRVIKGGIPSIILCNPGEGSSYQDFLDKQENEALKSWTLQNSTFAKIWGPLF FT DKASETPQEGHSTM" FT gene complement(2437..2694) FT /gene="C4" FT CDS complement(2437..2694) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /note="cell cycle regulator" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6QBP6" FT /protein_id="AAS86157.1" FT /translation="MGNRICMPLFNSRAKSKSVMPVTSICNIEVPANNSTAIFRELNPV FT PTSSPTSQRTEITSTGVNFRSMEDLHAEVNRRLMMLQQRP" XX SQ Sequence 2925 BP; 844 A; 530 C; 635 G; 916 T; 0 other; accggatggc ccccgaaaaa aaaaacgtgg cccaataaaa aaatgccacg tggaaagcat 60 atgatgtcga tgtgatattt tttggcggga aacttcctga agaagttttc tttcccgctc 120 atttttttga cttagtcaaa aagtagccga catagttttg aaataaagtt aaaagtagat 180 gactgtggtc cccacaggaa acttgctcag caagtttcga ataatgtcgg tttatatacg 240 ttatttttac atgtatatgt acttataaat gatggtctgt ctaccagact ggttattttt 300 gttattcatc ttcagtatcc tcctacaatc gggtaccaat ttttatggga cctttcagag 360 tggatcaatt tcccggaaat tatcctgcct tgctagccgt ttcgacgagt tgtttcttaa 420 ggtacaacag gtggtgtata ctaggtatcc atcacgagat cgaaccgttg acactagaag 480 aaggcgaggt ctttctgcaa ttccagaagg aagtgaagaa gttactgaag cgtaagtgca 540 attttgcaag gaagtgtgct ttatatgagg aaatatacaa gaaatacgta tcaaatgtcg 600 cagaagagaa aggcacccaa gttccagact gtatggccga agaagaggaa gacgatgact 660 tccaagaagt atcaatggaa gagacctgtg caaaagaata ggtctctgaa attgaagatg 720 tatgacgaca tgcttggttc gggtggaatt ggttctacca ttagtaataa tggtatgatc 780 acaatgctga ataattatgt gcaaggtatt ggtgacagtc agaggtctac taatctgact 840 gttactaaac atttgaaatt tgatatggct cttatgggga gttctggttt ttgggaaact 900 cctaattata tgacccaata tcattggatt attgtggaca aggatgttgg ttctgttttc 960 ccagacaagt tggataccat atttgatatt ccgcccaatg gtcaggctat gccgtctacg 1020 taccggattc gaagagatat gaatgaaagg tttatcgtga agaggaagtg gactactcat 1080 ctgatgtcta ctggaacagc ttatggtggt cgtgacacgt ataagggtcc gtctatgccg 1140 aattacaaga aagcaatgaa tatcaatatt cgtaatctga atataaggac tgtttggaag 1200 gatactggtg gtggcaagta tgaagatgtg aaggagaatg caattattta tgttgtagtt 1260 aatgataata cagacaatac aaacatgtat gctactttgt ttggaaattg tagatgctat 1320 ttttattaat aaataagaag tttttaatac aagttcattg caatacttgt gtcttgtatg 1380 acactgttta caaagttgaa aacatcatac aatatatatt ctaatatatt aactacaata 1440 ttaatagaga tcgtttccct ccttgtgata gccaactgga gttggcgttt caagactctc 1500 aagaaacgat ctccagtcaa tgtcctgtgt gagccagtga tcgtcaaatc tatccagcac 1560 ttgtgaagat tcaagaatcg ccggaggttg tggttgaatc tgatctggac cttcgtctgg 1620 tatactggtc catacctctg gaaccatagg agtttgatgt atagtggatt cggtactgaa 1680 gccacttgga ctgctctggt cgcctgttgg agagtaatag gatcccctgt gcgaaaatcc 1740 ctgatgacat tcatgatgaa ttgtaaaatg gcacttacat ggtagaatga ccttcttggg 1800 gcgtttctga agctttatca aagagaggac cccagatttt tgcgaaggtt gaattctgta 1860 gcgtccagga cttaagcgct tcattctctt gtttatctaa gaagtcctgg tagctactcc 1920 cttcgcctgg gttgcataat ataatactag gaataccacc tttaatgaca cgtggttttc 1980 catactttaa atttgtctgc cactctcttt gagcgcctat tagatgcttc cagtgcttca 2040 tctttaagta attgggatcc acatcatcaa tgacgttata tagtacgtca tcactatatg 2100 tttttaaact aaaatctaaa tgcccactaa tataattatg tggacccaaa gacctggccc 2160 acattgtttt tcctgttcta gaatcaccct ctatgattat actattatat ctaaaaggcc 2220 gcgcagcggc atcaaccccg aaataagaat cggcccactc ttgaataact tctggaactc 2280 tagtgaatga agataaagga aaaggtggtt tatagatttc tggaggtgga agaaaaatag 2340 cttctaggtt aggttttaaa ttatgaaatt gaaaaatata tttctcaggg agcttttccc 2400 tgataatctg catagcttct gcagcagtac ctgcgtttaa ggcctctgct gcagcatcat 2460 tagccgtctg ttgacctccg cgtgcagatc ttccatcgat ctgaaattca ccccagtcga 2520 tgtaatctcc gtcctttgcg acgtaggact tgacgtcggt actggattta gctccctgaa 2580 tattgcagtg gaattgtttg ctggaacttc gatgttgcag atcgaagtaa cgggcattac 2640 ggatttggac tttgccctcg aattgaataa gggcatgcag atgcggttcc ccattgtcgt 2700 gtaactccct gcttattcta atatattttt tatttgacgg agtggagatt gctagaagct 2760 gttctaaagc ttcttcttta gaaatggaac attgaggata tgttaaaaaa taattctttg 2820 ctttcctata aaaaggcatt ttgtattggg ctctctccaa aacttgtttc aattgggtgc 2880 tttgggagct cttaaatacc atcgggggcc atccgcaata atatt 2925 //