Dbfetch
ID AY547317; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC AY547317; XX DT 11-MAR-2004 (Rel. 79, Created) DT 20-OCT-2006 (Rel. 89, Last updated, Version 4) XX DE Mungbean yellow mosaic India virus - [India:Varanasi:Dolichos:2005] segment DE DNA-A, complete sequence. XX KW . XX OS Mungbean yellow mosaic India virus - [India:Varanasi:Dolichos:2005] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2736 RX DOI; 10.1016/j.biortech.2005.09.004. RX PUBMED; 16242317. RA Singh S.K., Chakraborty S., Singh A.K., Pandey P.K.; RT "Cloning, restriction mapping and phylogenetic relationship of genomic RT components of MYMIV from Lablab purpureus"; RL Bioresour. Technol 97(15):1807-1814(2006). XX RN [2] RP 1-2736 RA Singh S.K., Chakraborty S., Singh A.K., Pandey P.K.; RT "Molecular characterization of begomoviruses causing yellow mosaic disease RT on cowpea (Vigna unguiculata) and hyacinth bean (Lablab purpureus)"; RL Unpublished. XX RN [3] RP 1-2736 RA Chakraborty S., Singh S.K., Singh A.K., Pandey P.K.; RT ; RL Submitted (12-FEB-2004) to the INSDC. RL Plant Virology Laboratory, Indian Institute of Vegetable Research, PB. No. RL 5002, Varanasi, Uttar Pradesh 221 005, India XX DR MD5; 5fd9d3184c10e096286763d076c69c52. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Mungbean yellow mosaic India virus - FT [India:Varanasi:Dolichos:2005]" FT /segment="DNA-A" FT /host="Dolichos" FT /strain="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:407833" FT gene 146..487 FT /gene="AV2" FT CDS 146..487 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:Q6QDB0" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:Q6QDB0" FT /protein_id="AAS55087.1" FT /translation="MWDPLLNDFSESLHGFRCMLAIKYLQQVQENYPSNSLGFLYLTGL FT IQVLRIRNHAQADLRYGLLYPDIECTEKIKLRYPARAACVCGRCPYQHEEKTLDQPPHV FT EETSVLPTV" FT gene 306..1079 FT /gene="AV1" FT CDS 306..1079 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="responsible for encapsidation of viral DNA and FT insect transmission" FT /db_xref="GOA:Q6QDA9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6QDA9" FT /protein_id="AAS55086.1" FT /translation="MPKRTYDTAFSTPISNARRRLNFDTPLVLPASVGGVPTNMKRRRW FT TNRPMWRKPRFYRLYRSPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITH FT RIGKRFCIKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGTPMDFGQVFNMYDNE FT PSTATVKNDLRDRYQVLRKFSATVTGGQYACKEQAMVNRFFKVNNYVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSILN" FT gene complement(1076..1480) FT /gene="AC3" FT CDS complement(1076..1480) FT /codon_start=1 FT /gene="AC3" FT /product="replicational enhancer protein" FT /note="enhances replication of geminiviruses" FT /db_xref="GOA:Q6QDA8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6QDA8" FT /protein_id="AAS55090.1" FT /translation="MDFRTGEYITAAQLKSGVYIWEVQNPLSFKIMHHSPILAGSRMMV FT TKLRIMFNHGLKKALRMHKCFLDLKLYHYLTATSGMILSIFRRPIFKFLNNLGVISLAN FT ILYFASDFLYVKLHLVEDVSFTHNVQYKLY" FT gene complement(1218..1670) FT /gene="AC2" FT CDS complement(1218..1670) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="aids in transcription of viral sense ORFs" FT /db_xref="GOA:Q6QDA7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6QDA7" FT /protein_id="AAS55089.1" FT /translation="MKRTMLRLNSGLQRMRNSTPSKNHCSPPSIKVQHRVAKKRAIRRS FT RIDLTCGCSYYIHINCRNYGFSHRGVHHCSSTQEWRLYLGGAKSPLFQDHAPQSNSSRV FT QNDGDQAAHNVQPRVEESTKDAQVLPGLEALPLFDGDFWDDLIDLP" FT gene complement(1528..2616) FT /gene="AC1" FT CDS complement(1528..2616) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /note="DNA polymerase; responsible for viral replication" FT /db_xref="GOA:Q6QDA6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6QDA6" FT /protein_id="AAS55088.1" FT /translation="MPREGRFAINARNYFLTYPRCPLTKEDALEQLLALSTPVNKKFIR FT ICRELHEDGQPHLHVLLQFEGKQQTRNQRFFDLYSRCRSTHYHPNIQAAKSCSDVKTYM FT EKDGDILDHGTFQIDGRSARGGKQSANDAYAEALNSGSKLEALLILKEKAPKDFILQFH FT NLNCNLSRIFTEPIQAYKSPFTLESFNKVPSYISSWAERNVRDPAARPDRPISIVIEGD FT SRTGKTMWARAIGPHNYLCGHLDLNDKTYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTKIKGGIPTIFLCNPGPKSSYKEYLDEENNAALKQWASKNAEFYTLKEPL FT FSTVNQGSTQGRQEESNSTISN" FT gene complement(2166..2465) FT /gene="AC4" FT CDS complement(2166..2465) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator protein" FT /note="may be involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6QDA5" FT /protein_id="AAS55091.1" FT /translation="MKMDSLISMFCFSSKGSNKRGTKGSSTSIPDAGQHITIRTFRQLR FT AAQMLKHTWRKTETFLIMEPSKSMADQLEEVNNLPTTHTPRHSTLDQSWRPSLY" XX SQ Sequence 2736 BP; 730 A; 574 C; 612 G; 820 T; 0 other; accgcgaccg gtgtattggg gtaactctaa cttttctgct tttgtggtac ccttatcttt 60 agtcgttcat tcagaagcgc tcctcagcgc tatgttaatt caaatttgaa ttataaagca 120 agtggacact ttgaacccac taacaatgtg ggatccattg ttgaacgact tttccgaatc 180 actgcatgga ttccggtgca tgttggcaat aaagtatttg cagcaagttc aagagaatta 240 tccatctaat tctcttggtt ttttgtacct tacagggtta attcaggtat tgcgcatccg 300 gaatcatgcc caagcggacc tacgatacgg ccttctctac cccgatatcg aatgcacgga 360 gaagattaaa cttcgatacc ccgctcgtgc tgcctgcgtc tgtgggaggt gtccctacca 420 acatgaagag aagacgttgg accaaccgcc ccatgtggag gaaacctcgg ttttaccgac 480 tgtataggtc ccctgatgtc cctcgtggtt gtgagggacc atgtaaagtt caatcatttg 540 agcaaaggca tgatattgcc cacacaggca aagtgatttg catatctgac gtgactagag 600 gtaatggaat tacacatcgt attggcaaac gattttgcat caagtccgtg tacattactg 660 gtaaggtttg gatggacgaa aatattaagt ccaaaaatca cacgaacact gtgatgttca 720 agttatgtcg tgacagacga ccttttggta cacccatgga ttttggtcaa gtgttcaaca 780 tgtatgacaa tgagcccagt acagctactg tgaagaacga tctgcgtgat cgttatcaag 840 tcctgcgaaa gtttagtgcc actgttactg gtggccaata tgcttgtaag gaacaagcca 900 tggtgaatcg tttcttcaaa gttaataatt atgttgttta caaccaccag gaggcagcga 960 agtatgagaa ccatactgag aacgcattat tattgtatat ggcatgtact catgcctcaa 1020 atcctgtgta tgcaacactt aaaattcgga tctattttta tgattcgata ttgaattaat 1080 aaagtttgta ttgaacatta tgcgtaaagc ttacatcctc caccaagtgg agttttacat 1140 acaggaaatc cgacgcgaaa tataaaatat ttgctaagct aatgactcct aaattattta 1200 gaaacttaaa tattggtcta cggaagatcg ataagatcat cccagaagtc gccgtcaaat 1260 aatggtagag cttcaagtcc aggaagcact tgtgcatcct tagtgctttc ttcaacccgt 1320 ggttgaacat tatgcgcagc ttggtcacca tcattctgga ccctgctaga attggactgt 1380 ggtgcatgat cttgaaagag aggggatttt gcacctccca gatatagacg ccactcttga 1440 gttgagctgc agtgatgtac tcccctgtgc gaaaatccat agttgcggca gttgatatgg 1500 atgtaatagc tacacccaca ggttagatca attcgagatc gtcgaattgc tctcttcttg 1560 gcgaccctgt gttgaacctt gattgacggt ggagaacagt ggttctttga gggtgtagaa 1620 ttccgcattc tttgaagccc actgtttaag cgcagcattg ttctcttcat ccaagtactc 1680 tttataggag gacttgggac cagggttaca cagaaagatg gtggggatac cacctttaat 1740 tttagtgggc ttcccgtact tgacgttaga ctgccagtct ctttgcgcgc ccatgaattc 1800 tttgaaatgt ttcaaataat gtggatcaac gtcatcgatg acgttgtacc atgcctcgtt 1860 agagtatgtt ttgtcgttta gatccaaatg gccgcaaaga taattatgag gacctatggc 1920 acgtgcccac atggttttac ccgtgcgact atctccttca ataacaatac taataggtct 1980 atctggccgc gcagcgggat ctctcacatt tctttcagcc catgaagaaa tgtagctggg 2040 aaccttgttg aatgactcta atgtaaaagg cgacttatat gcctgaatag gctctgtgaa 2100 tatccgagac aaattacaat ttaagttatg aaattgtaaa ataaaatcct tgggagcctt 2160 ttcttttaat ataaggaggg cctccaactt tgatccagag ttgagtgcct cggcgtatgc 2220 gtcgttggca gattgtttac ctcctcgagc tgatctgcca tcgatttgga aggttccatg 2280 atcaagaatg tctccgtctt tctccatgta tgttttaaca tctgagcagc tcttagctgc 2340 ctgaatgttc ggatggtaat gtgttgaccg gcatctggaa tagaggtcga agaacctttg 2400 gttcctcgtt tgttgcttcc cttcgaactg aagcagaaca tggagatgag gctgtccatc 2460 ttcatggagt tcacgacaga tgcggatgaa cttcttgtta accggtgttg acaacgcgag 2520 aagttgttca agagcgtcct cctttgtaag aggacatctg ggatatgtca agaaatagtt 2580 tcttgcgttt atagcaaaac gaccttccct tggcatattt gaagtcgttt ttgtatcggt 2640 gtacaccgat tacttctcta tccccctatc ggtgtatcgg tgtactatat atactagagc 2700 tactaaaagc ccataggggc actcagctat aatatt 2736 //