ID AY546104; SV 1; linear; genomic RNA; STD; VRL; 3682 BP. XX AC AY546104; XX DT 02-MAR-2005 (Rel. 83, Created) DT 27-FEB-2008 (Rel. 94, Last updated, Version 3) XX DE Tobacco necrosis virus A, complete genome. XX KW . XX OS Tobacco necrosis virus A OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphanecrovirus. XX RN [1] RP 1-3682 RX DOI; 10.1007/s11262-007-0185-x. RX PUBMED; 18071890. RA Xi D., Li J., Han C., Li D., Yu J., Zhou X.; RT "Complete nucleotide sequence of a new strain of Tobacco necrosis virus A RT infecting soybean in China and infectivity of its full-length cDNA clone"; RL Virus Genes 36(1):259-266(2008). XX RN [2] RP 1-3682 RA Xi D., Li D., Zhou X., Yu J., Yuan X., Cao Y., Li J.; RT "Functional analysis of tobacco necrosis virus strain A-C"; RL Unpublished. XX RN [3] RP 1-3682 RA Xi D., Li D., Zhou X., Yu J., Yuan X., Cao Y., Li J.; RT ; RL Submitted (11-FEB-2004) to the INSDC. RL State Key Laboratory of Agrobiotechnology, China Agricultural University, RL #2 Yuanmingyuan West Rd., Beijing, Beijing 100094, China XX DR MD5; d222f58e5a1a5f01b7b1a66113071ec1. DR EuropePMC; PMC6475782; 30814279. XX FH Key Location/Qualifiers FH FT source 1..3682 FT /organism="Tobacco necrosis virus A" FT /strain="A" FT /isolate="Tobacco necrosis virus A-C" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12055" FT 5'UTR 1..59 FT gene 60..2234 FT /gene="RdRp" FT CDS 60..2234 FT /codon_start=1 FT /transl_except=(pos:666..668,aa:OTHER) FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="putative readthrough stop codon" FT /db_xref="GOA:Q5DQE6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q5DQE6" FT /protein_id="AAT69238.1" FT /translation="MELPNQHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVAFQADLALI FT EDTEHLDDINECFEESAGAQSQRTKVVAEGAYAPAKSNRTRRVRKQKKHKFVKYLVNEA FT RAEFGLPKPTEANRLMVQHFLLRVCKDWGVVTAHVHGNVALALPLVFIPTEDDLLSRAL FT MNTYATRAAVRGMEHTQGEGWWNNRLGIGGQVGLAFRSKXGCLERRPGFSTSVSRGEHP FT DLVVIPSGRPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPSGLQDAP FT KPVKGAFRTLDKFRDLYTKNSWRHTPVTSEQFLMNYSGRKLTIYREAVDSLSHQPLSSR FT DAKLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHALKTIAKCFGEI FT TVFKGFTLEQQGEIMRSKWNKYVNPVAVGLDASRFDQHVSVEALEYEHEFYLRDYPNDK FT QLKWLLKQQLCNIGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVYGLKEHLGI FT KLSLANNGDDCVIVCEKADLSKLTSSIEPYFKQFGFKMEVEKPVDIFERIEFCQTQPVF FT DGNQYIMVRKPSVVTSKDVTSLIPCQNQAQYAEWLQAVGECGMSINGGIPVMQNFYQML FT QTGVSRTKFTKTGEFQANGLGYHSRFMNRVARSPSPETRLSFYLAFGITPDLQEALEIF FT YDTTKLELDDVVPTDTYQVSGEHLINGLSN" FT gene 2218..2436 FT /gene="P7" FT CDS 2218..2436 FT /codon_start=1 FT /gene="P7" FT /product="P7" FT /note="possibly related to cell-to-cell movement of the FT virus" FT /db_xref="GOA:Q5DQE5" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q5DQE5" FT /protein_id="AAT69239.1" FT /translation="MDYQTDVSEDNVQVRGRARSSEGKKHNGSGLTGVKRHAVSETSQK FT SQQGTGNGTMTNIAEEQTITVTYNFNF" FT gene 2439..2609 FT /gene="P5" FT CDS 2439..2609 FT /codon_start=1 FT /gene="P5" FT /product="P5" FT /note="possibly related to cell-to-cell movement of the FT virus" FT /db_xref="GOA:Q5DQE4" FT /db_xref="UniProtKB/TrEMBL:Q5DQE4" FT /protein_id="AAT69240.1" FT /translation="MAYCRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT gene 2612..3442 FT /gene="CP" FT CDS 2612..3442 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q5DQE3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5DQE3" FT /protein_id="AAT69241.1" FT /translation="MAGKKNNNNGQYIVLRTPEQQVEIDQRDARRLARGRMKKMRQPVQ FT RYINEHGLQNGLSGRGGYVVAPASGGVVTRPIVPKFSNRGDSTIVRNTEILNNQILAAA FT GAFNTTNSALIAAAPSWLAGISDLYSKYRWLSCELIYIPKCPTTTSGSVAMAFTYDRND FT AAPTTRAQLSQSYKAINFPPYAGYDGAAYLNSMRGAGTAIAIQLDITKLDKPWYPTISS FT GAFAALGVLDQNQFCPASVVVASDGGPVAATPAGDIFIKYVIEFIEPINPTMNV" FT 3'UTR 3443..3682 XX SQ Sequence 3682 BP; 1013 A; 864 C; 924 G; 881 T; 0 other; agtattcata ccaagaatac cggataggtg cgaagcctta ctcagccaaa gagtctaaaa 60 tggagttacc aaaccaacac aagcaaacag ccgccgaggg ttttgtttct ttcctaaact 120 ggctatgcaa tccatggcgc cgacaacgta cagtcaacgc tgccgttgcg ttccaagccg 180 acctggccct cattgaggac acagagcatc ttgatgacat caatgagtgc tttgaggagt 240 cggctggggc tcaatcgcag cgcactaagg ttgtggcaga aggagcatat gcgcccgcta 300 aatccaatag aacccgccgg gtccgtaagc agaaaaagca caagttcgtt aaatatcttg 360 tgaacgaggc ccgagccgag tttgggttgc ctaaaccaac tgaggcaaac agactcatgg 420 ttcaacattt cctgctcagg gtgtgtaagg attggggtgt ggtcacagcc cacgtacacg 480 gcaacgttgc acttgcattg cctctggtgt ttattccaac ggaagacgat ctgctgtcaa 540 gagcattgat gaacacgtac gctacaaggg ccgctgtacg gggcatggag cacacccagg 600 gagaggggtg gtggaacaat aggttgggga ttggaggcca ggttggactg gccttccggt 660 ccaaataggg gtgccttgaa aggaggccag gattctccac gtccgtttcg cgtggggaac 720 atcctgatct ggtggtcata ccatcagggc gccctgagaa acagcgtcag ttgttacgct 780 atagtggtat aggcggccat ttattaatcg gcatccacaa caactctctt tccaacttac 840 gtaggggttt gatggaaaga gtattttacg tcgaggggcc ttcgggtctc caagatgccc 900 ctaagcccgt caagggagcg ttccgaaccc ttgataagtt ccgcgatctc tataccaaaa 960 atagttggcg tcatacccct gtaactagtg agcaattcct aatgaattac tcgggcagga 1020 aactaactat ttaccgagaa gcagttgata gtttgtcgca tcaaccgctt agctccagag 1080 atgcgaagtt gaagacattc gttaaggccg aaaaacttaa tctttctaag aagcctgacc 1140 ctgcccccag ggtcatccaa cctagatcgc ctcggtacaa cgtttgtttg ggcaggtacc 1200 tccgacatta tgaacatcat gcgctcaaaa ccattgctaa atgctttggg gaaatcacgg 1260 tcttcaaggg gtttactctc gagcaacaag gtgaaatcat gcggtccaag tggaataaat 1320 atgttaatcc cgtcgcggtc ggactcgatg ccagtcggtt tgaccaacac gtgtctgttg 1380 aagcacttga gtacgagcat gaattttatt tgagagatta ccctaatgat aaacagctga 1440 aatggttgct aaagcaacaa ctgtgcaaca taggcacggc atttgctagt gatggcatca 1500 taaagtacaa gaaggaaggt tgcagaatga gtggggacat gaacactagt ttgggcaatt 1560 gcatactcat gtgcgcaatg gtctacggtc ttaaagaaca cctaggaatc aaattgtcgt 1620 tggcaaacaa cggggatgac tgcgtcattg tctgtgagaa agcggattta tcaaagttga 1680 cgagcagcat cgaaccgtat ttcaagcaat ttggattcaa aatggaggtg gagaaacccg 1740 tggacatatt cgagagaatt gaattttgcc aaacccagcc tgtgttcgat ggtaaccagt 1800 acataatggt gcgaaagcct tccgttgtaa cttccaaaga tgtcactagt ctaataccct 1860 gtcaaaacca ggcacaatat gcagaatggc tgcaagctgt aggtgagtgt ggcatgagca 1920 tcaatggtgg aatccctgtt atgcagaatt tctaccaaat gcttcaaact ggcgtaagcc 1980 gcacaaaatt caccaagacc ggcgagttcc aggcgaatgg cttggggtat cactctagat 2040 tcatgaatag agtggcccgg agtccttcgc ccgaaacccg tttgtccttt tacctagctt 2100 ttggtatcac accagacctc caggaagcac tggagatctt ctatgatacc acgaagctgg 2160 agctggacga tgttgtccca actgatacat accaagtatc aggagagcat ttgatcaatg 2220 gattatcaaa ctgatgtcag tgaggacaat gtgcaagttc gcggtcgggc taggagtagt 2280 gagggtaaga aacacaatgg ttcgggattg actggcgtaa agcgtcacgc ggtgagtgaa 2340 acatctcaga aatcacagca aggtactggc aacggaacaa tgaccaacat agccgaagag 2400 cagaccatta ccgtgacata caactttaac ttttagttat ggcgtattgt cgctgttgtg 2460 atacttcacc aggtattaca ttattcccct actttgcaat tctcatcctc atattagcaa 2520 tacttgttgt tggcactcca aaccaacaat atcatcattc tcctagtact tacgagtata 2580 agactcaaca catttcgatc gcaaaataga catggcagga aagaagaaca acaacaatgg 2640 tcagtacatt gtactgcgta ctccagagca acaggtggaa attgaccagc gtgatgcacg 2700 caggctggca cgaggccgca tgaagaaaat gaggcagcca gttcagcgct acatcaacga 2760 gcatgggcta caaaatgggt tgtcagggcg aggtggttac gtcgtcgctc ccgcatctgg 2820 tggggtggtg actcgaccca tcgtaccaaa gttttctaac agaggtgact cgactattgt 2880 tcgcaatacc gagatcctaa acaaccaaat attagccgca gctggcgcgt tcaacactac 2940 caattccgca ctgattgcag cggcaccatc atggttggct ggaatttctg atttatacag 3000 taaatataga tggctttctt gtgagctcat ctacatacct aaatgtccaa ccacaacaag 3060 tggatctgtt gcaatggctt tcacttatga tcgtaatgat gctgccccta ccacaagggc 3120 gcagttatca caatcttaca aagccatcaa ttttccaccc tacgcagggt atgacggagc 3180 agcgtacttg aactcaatga gaggtgctgg gacagccatt gctatccagt tggatatcac 3240 caagctggac aagccttggt accctaccat ctcttcaggt gcctttgctg cccttggtgt 3300 gctggaccag aatcaattct gcccggcatc cgtagttgtc gctagtgatg ggggtcctgt 3360 agcagccaca cctgctgggg acatcttcat caagtacgtg attgagttca ttgaaccaat 3420 caacccaaca atgaacgtgt agttcttgta ctgtaactcg accaatgcct acggcagagt 3480 cacacgtgtg gagatggatg ctggatcctg agaaacaggt ttaacgggta gggggtggtg 3540 cccctaccga cgcatcactc cagataccac acgtactcgg ctatggcagg gtctgtcgag 3600 gtatgtgcgc caagaaccac tggaaacggt ggtgaggggg gtagcacaat tcatccagat 3660 tgaggggctt ttgccccacc cc 3682 //