ID   AY541039; SV 1; linear; genomic RNA; STD; VRL; 1262 BP.
XX
AC   AY541039;
XX
DT   11-MAR-2004 (Rel. 79, Created)
DT   08-MAR-2018 (Rel. 136, Last updated, Version 4)
XX
DE   Barley yellow dwarf virus-SGV RNA-dependent RNA polymerase P1-P2 fusion
DE   protein and putative coat protein P3 genes, partial cds; and putative
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus SGV
OC   Viruses; Riboviria; Luteoviridae.
XX
RN   [1]
RP   1-1262
RX   DOI; 10.1016/j.jviromet.2004.04.005.
RX   PUBMED; 15234811.
RA   Malmstrom C.M., Shu R.;
RT   "Multiplexed RT-PCR for streamlined detection and separation of barley and
RT   cereal yellow dwarf viruses";
RL   J. Virol. Methods 120(1):69-78(2004).
XX
RN   [2]
RP   1-1262
RA   Shu R., Malmstrom C.M.;
RT   ;
RL   Submitted (04-FEB-2004) to the INSDC.
RL   Plant Biology, Michigan State University, 166 Plant Biology MSU, East
RL   Lansing, MI 48824, USA
XX
DR   MD5; 11bf8475022fa14d42c3ecc201c18295.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1262
FT                   /organism="Barley yellow dwarf virus SGV"
FT                   /isolate="SGV"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:2169981"
FT   CDS             <1..628
FT                   /codon_start=2
FT                   /product="RNA-dependent RNA polymerase P1-P2 fusion
FT                   protein"
FT                   /note="ORF2; low-abundance product derived from -1
FT                   ribosomal frameshift"
FT                   /db_xref="GOA:Q6QHJ2"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ2"
FT                   /protein_id="AAS55452.1"
FT                   /translation="NGDDCVIITERENEHLFXGMYDHFLHYGFNMVTEQPVYELEKLEF
FT                   CQSRPVRIGGRYRMVRRPDCMGKDSTTLLSMLNESDVKSYMSAVAQCGLVLNAGVPILE
FT                   SFYKCLFRSSGYKKVSEEYIQNVISYGTDERLQGRRTFEETPITTDNRMSYWESFGVDP
FT                   KIQQIVERYFDNLTVSAQLQSVKVTTPHLQSILLSIPENTYQHHY"
FT   CDS             742..>1262
FT                   /codon_start=1
FT                   /product="putative coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1; occasional
FT                   read-through of stop codon produces P3-P5 fusion protein"
FT                   /db_xref="GOA:Q6QHJ1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ1"
FT                   /protein_id="AAS55453.1"
FT                   /translation="MNSQGPRRNARKNVRRRNRTVRPVVVVQAPGTGRRRRNGRRPARR
FT                   RANHLPRPAGRSEVFTFSVNDIKGNSNGVIKFGPSLSQCPALSDGILKSYHDYAITNVQ
FT                   IFYRSHASSETEGALFIELDNSCTQSALASYINSFTITSSGSKTFTAGSINGTTMKNYL
FT                   SDQFYLLYKG"
FT   CDS             779..1219
FT                   /codon_start=1
FT                   /product="putative movement protein P4"
FT                   /note="ORF4; translated via leaky scanning from subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ0"
FT                   /protein_id="AAS55454.1"
FT                   /translation="MSEDAIEQFGQWLWSKPPEPGEDEEMVDVQQEDGQIIYRDQQAGL
FT                   RYSLFQSTTSKATPTGSSNSAPAFRNVLHYQTEYLSPTTTTRSQMSRYSIDRTPAPKLR
FT                   AHSLLNSTTRAHNQPWLATLTHSPSQVPDRRPSRRALLTGPR"
XX
SQ   Sequence 1262 BP; 382 A; 295 C; 273 G; 310 T; 2 other;
     caatggagat gattgtgtca tcataactga gagagagaat gaacacctct tcmgtggaat        60
     gtatgaccat ttcctacatt atggtttcaa catggttact gaacaaccag tgtatgaatt       120
     ggaaaaactt gaattctgcc aatcccgtcc agttaggata gggggtagat acagaatggt       180
     cagacgacca gactgcatgg ggaaggacag caccacacta ctgagcatgc taaatgagtc       240
     agacgttaaa tcatatatgt ctgccgtggc gcagtgtggg cttgtcttga atgctggtgt       300
     acccatactt gaaagcttct acaagtgttt attcagaagc tctgggtaca aaaaagtaag       360
     tgaggaatac atccaaaacg tcatatctta tggaacagat gaaaggcttc aaggtagacg       420
     tacctttgag gaaacaccta tcaccactga caatcgcatg tcatattggg aatcatttgg       480
     agttgatccg aagatacaac aaattgtcga gcggtacttc gacaatctra cggttagtgc       540
     ccaactccaa agtgtgaagg tgactactcc acatctgcaa tcaatcctcc tctcaattcc       600
     tgagaacaca taccagcatc attattaatt accagatctt agccgggttt ggtattgggt       660
     ttatagttag tattccttgt acattaacta tcacctattt catttacaat caagttagca       720
     acaccactcg ggaagtggtg aatgaattct caaggcccta ggcgcaacgc acgcaaaaat       780
     gtcagaagac gcaatcgaac agttcggcca gtggttgtgg tccaagcccc cggaaccggg       840
     cgaagacgaa gaaatggtcg acgtccagca agaagacggg caaatcattt accgagacca       900
     gcaggcaggt ctgaggtatt cactttttca gtcaacgaca tcaaaggcaa ctccaacggg       960
     gtcatcaaat tcggccccag cctttcgcaa tgtcctgcat tatcagacgg aatacttaag      1020
     tcctaccacg actacgcgat cacaaatgtc cagatattct atagatcgca cgccagctcc      1080
     gaaactgagg gcgcactctt tattgaactc gacaactcgt gcacacaatc agccttggct      1140
     agctacatta actcattcac catcacaagt tccggatcga agaccttcac ggcgggctct      1200
     attaacggga ccacgatgaa gaactatttg tctgaccagt tttacctctt atacaaaggc      1260
     aa                                                                     1262
//