ID   AY541038; SV 1; linear; genomic RNA; STD; VRL; 1267 BP.
XX
AC   AY541038;
XX
DT   11-MAR-2004 (Rel. 79, Created)
DT   27-FEB-2006 (Rel. 86, Last updated, Version 3)
XX
DE   Barley yellow dwarf virus SGV-NY RNA-dependent RNA polymerase P1-P2 fusion
DE   protein and putative coat protein P3 genes, partial cds; and putative
DE   movement protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus
OC   Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus.
XX
RN   [1]
RP   1-1267
RX   DOI; 10.1016/j.jviromet.2004.04.005.
RX   PUBMED; 15234811.
RA   Malmstrom C.M., Shu R.;
RT   "Multiplexed RT-PCR for streamlined detection and separation of barley and
RT   cereal yellow dwarf viruses";
RL   J. Virol. Methods 120(1):69-78(2004).
XX
RN   [2]
RP   1-1267
RA   Shu R., Malmstrom C.M.;
RT   ;
RL   Submitted (04-FEB-2004) to the INSDC.
RL   Plant Biology, Michigan State University, 166 Plant Biology MSU, East
RL   Lansing, MI 48824, USA
XX
DR   MD5; c19cbd266db1ebeb122849cc46793d97.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1267
FT                   /organism="Barley yellow dwarf virus"
FT                   /isolate="SGV-NY"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:12037"
FT   CDS             <1..603
FT                   /codon_start=1
FT                   /product="RNA-dependent RNA polymerase P1-P2 fusion
FT                   protein"
FT                   /note="ORF2; low-abundance product derived from -1
FT                   ribosomal frameshift"
FT                   /db_xref="GOA:Q6QHJ5"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ5"
FT                   /protein_id="AAS55449.1"
FT                   /translation="PERENEHLFTGMYDHFLHYGFNMVTEQPVYELEKLEFCQSRPVRI
FT                   GGRYRMVRRPDCMGKDSTTLLSMLNESDVKSYMSAVAQCGLVLNAGVPILESFYKCLFR
FT                   SSGYKKVSEEYIQNVISYGTDERLQGRRTFEETPITTDNRMSYWESFGVDPKIQQIVER
FT                   YFDBLTVSAQLQSVKVTTPHLQSILLSIPENTYQHHY"
FT   CDS             717..>1267
FT                   /codon_start=1
FT                   /product="putative coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1; occasional
FT                   read-through of stop codon produces P3-P5 fusion protein"
FT                   /db_xref="GOA:Q6QHJ4"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ4"
FT                   /protein_id="AAS55450.1"
FT                   /translation="MNSQGPRRNARKNVRRRNRTVRPVVVVQAPGTGRRRRNGRRPARR
FT                   RANHLPRPAGRSEVFTFSVNDIKGNSNGVIKFGPSLSQCPALSDGILKSYHDYAITNVQ
FT                   IFYRSHASSETEGALFIELDNSCTQSALASYINSFTITSSGSKTFTAGSINGTTMKNYL
FT                   SDQFYLLYKGNSSKATVAGQ"
FT   CDS             754..1194
FT                   /codon_start=1
FT                   /product="putative movement protein P4"
FT                   /note="ORF4; translated via leaky scanning from subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ3"
FT                   /protein_id="AAS55451.1"
FT                   /translation="MSEDAIEQFGQWLWSKPPEPGEDEEMVDVQQEDGQIIYRDQQAGL
FT                   RYSLFQSTTSKATPTGSSNSAPAFRNVLHYQTEYLSPTTTTRSQMSRYSIDRTPAPKLR
FT                   AHSLLNSTTRAHNQPWLATLTHSPSQVPDRRPSRRALLTGPR"
XX
SQ   Sequence 1267 BP; 379 A; 300 C; 276 G; 308 T; 4 other;
     cctgagagag agaatgaaca cctcttcact ggaatgtatg accatttcct acattacggt        60
     ttcaacatgg ttactgaaca accagtgtat gaattggaaa aacttgaatt ctgccaatcc       120
     cgtccagtta ggataggggg tagatacaga atggtcagac gaccagactg catggggaag       180
     gacagcacca cactactgag catgctaaat gagtcagacg ttaaatcata tatgtctgcc       240
     gtggcgcagt gtgggcttgt cttgaatgct ggtgtaccca tacttgaaag cttctacaag       300
     tgtttattca gaagctctgg gtacaaaaaa gtgagtgagg aatacatcca aaacgtcata       360
     tcttatggaa cagatgaaag gcttcaaggt agacgtacct ttgaggaaac acctatcacc       420
     actgacaatc gcatgtcata ttgggaatca tttggagttg atccgaagat acaacaaatt       480
     gtcgagcggt acttcgacra tctaacggtt agtgcccaac tccaaagtgt gaaggtgact       540
     actccacatc tgcaatcaat cctcctctca attcctgaga acacatacca gcatcattat       600
     taattaccag atcttagccg ggtttggtat tgggtttata gttagtattc cttgtacatt       660
     aactatcacc tatttcattt acaatmaagt tagcaacacc acymgggaag tggtgaatga       720
     attctcaagg ccctaggcgc aacgcacgca aaaatgtcag aagacgcaat cgaacagttc       780
     ggccagtggt tgtggtccaa gcccccggaa ccgggcgaag acgaagaaat ggtcgacgtc       840
     cagcaagaag acgggcaaat catttaccga gaccagcagg caggtctgag gtattcactt       900
     tttcagtcaa cgacatcaaa ggcaactcca acggggtcat caaattcggc cccagccttt       960
     cgcaatgtcc tgcattatca gacggaatac ttaagtccta ccacgactac gcgatcacaa      1020
     atgtccagat attctataga tcgcacgcca gctccgaaac tgagggcgca ctctttattg      1080
     aactcgacaa ctcgtgcaca caatcagcct tggctagcta cattaactca ttcaccatca      1140
     caagttccgg atcgaagacc ttcacggcgg gctctattaa cgggaccacg atgaagaact      1200
     atttgtctga ccagttttac ctcttataca aaggcaacag ttctaaggcc actgttgcag      1260
     gtcagtg                                                                1267
//