ID   AY540130; SV 1; linear; genomic RNA; STD; VRL; 1291 BP.
XX
AC   AY540130;
XX
DT   01-MAR-2004 (Rel. 79, Created)
DT   27-FEB-2006 (Rel. 86, Last updated, Version 3)
XX
DE   Barley yellow dwarf virus SGV-I RNA-dependent RNA polymerase P1-P2 fusion
DE   protein and putative coat protein genes, partial cds; and movement protein
DE   P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus
OC   Viruses; Riboviria; Luteoviridae; Luteovirus; unclassified Luteovirus.
XX
RN   [1]
RP   1-1291
RX   DOI; 10.1016/j.jviromet.2004.04.005.
RX   PUBMED; 15234811.
RA   Malmstrom C.M., Shu R.;
RT   "Multiplexed RT-PCR for streamlined detection and separation of barley and
RT   cereal yellow dwarf viruses";
RL   J. Virol. Methods 120(1):69-78(2004).
XX
RN   [2]
RP   1-1291
RA   Shu R., Malmstrom C.;
RT   ;
RL   Submitted (03-FEB-2004) to the INSDC.
RL   Plant Biology, Michigan State University, 162 Plant Biology Building, East
RL   Lansing, MI 48824, USA
XX
DR   MD5; 852e1ea3ac75f431e5e6d897160ffee1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1291
FT                   /organism="Barley yellow dwarf virus"
FT                   /isolate="SGV-I"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:12037"
FT   CDS             <1..630
FT                   /codon_start=1
FT                   /product="RNA-dependent RNA polymerase P1-P2 fusion
FT                   protein"
FT                   /note="low-abundance product derived from -1 ribosomal
FT                   frameshift"
FT                   /db_xref="GOA:Q6QHY6"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHY6"
FT                   /protein_id="AAS45853.1"
FT                   /translation="NNGDXVFIITERKNEHLFXGMYDHFLHYGFNMVTEQPVYELEKLE
FT                   FCQSRPVRIGGRYRMVRRPDCMGKDSTTLLSMLNESDVKSYMSAVAQCGLVLNAGVPIL
FT                   ESFYRCLFRSSGYKKVSEEYIQNVISYGTDERLQGRRTYEETPITTDNRMSYWESFGVD
FT                   PKIQQLVERYFDDLTVSAQLQSVKVTTPHLQSILLSIPENTYQHHN"
FT   CDS             744..>1291
FT                   /codon_start=1
FT                   /product="putative coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q6QHY5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHY5"
FT                   /protein_id="AAS45854.1"
FT                   /translation="MNSQGPRRNTRRNVRRRTRSVRPVVVVQAPGTGRRRRNGRRPARR
FT                   RANNLSRPTGRTEVFTFSVNDIKGNSSGVIKFGPSLSQCPALSDGILKSYHDYAITNVQ
FT                   VFYRSHASSETEGALFIELDNSCTQSALGSYINSFTITSSGSKTFTAGSINGTTMKNYL
FT                   SDQFYLLYKGNSSKATVQV"
FT   CDS             781..1221
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning on subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q6QHJ6"
FT                   /protein_id="AAS45855.1"
FT                   /translation="MSEGALDQFGQWLWSKPPEPDEDEEMVDVQQEDGQIIYQDQQAGL
FT                   RYSLFQSTTSKATPAGSSNSAPAFRNVLHFQTEYLSPTTITRSQMSKYSIDRTPAPKLR
FT                   AHSLLNSTTRAHNQPWVATLTHSPSQAPDRRPSRRALLTGPR"
XX
SQ   Sequence 1291 BP; 391 A; 306 C; 281 G; 310 T; 3 other;
     aacaatggag atgwtgtgtt catcataact gagagaaaaa atgaacacct cttcmstgga        60
     atgtatgacc atttcctaca ctacggcttt aacatggtca ctgaacaacc agtgtacgag       120
     ttagaaaaac tcgaattctg ccagtcccgt ccagtcagga ttggaggcag atacagaatg       180
     gttaggaggc ctgattgcat ggggaaggac agtaccacat tgttgagcat gctaaacgaa       240
     tcagacgtta aatcttacat gtctgctgta gcacagtgtg gtcttgtctt gaatgctggt       300
     gtacccattt tggaaagctt ctatagatgt ttgtttagaa gttctgggta caagaaagtg       360
     agcgaggaat acatccaaaa cgtcatatca tacggaacag atgaaaggct tcaaggtaga       420
     cgtacctatg aggagacacc tatcaccact gacaatcgca tgtcatattg ggaatcattt       480
     ggagttgacc cgaagataca acaactcgtc gagcggtact tcgacgatct aacggttagt       540
     gcccaactcc aaagtgtgaa ggtgactact ccacatctgc aatcaatcct cctctcaatt       600
     cctgagaaca cataccagca tcataattaa ttaccagatc ttagccgggt ttggtattgg       660
     gtttatagtt agtattcctt gcacattaac tatcacctat ttcatttaca ataaagttag       720
     caacaccacc agggaagtgg tgaatgaatt ctcaaggccc taggcgcaac acacgaagaa       780
     atgtcagaag gcgcactcga tcagttcggc cagtggttgt ggtccaagcc cccggaaccg       840
     gacgaagacg aagaaatggt cgacgtccag caagaagacg ggcaaataat ttatcaagac       900
     caacaggcag gactgaggta ttcacttttt cagtcaacga catcaaaggc aactccagcg       960
     gggtcatcaa attcggcccc agcctttcgc aatgtcctgc actttcagac ggaatactta      1020
     agtcctacca cgattacgcg atcacaaatg tccaagtatt ctatagatcg cacgccagct      1080
     ccgaaactga gggcgcactc tttattgaac tcgacaactc gtgcacacaa tcagccctgg      1140
     gtagctacat taactcattc accatcacaa gctccggatc gaagaccttc acggcgggct      1200
     ctattaacgg gaccacgatg aagaactatt tatctgacca attctacctc ctatacaaag      1260
     gcaacagttc taaggccact gtgcaggtca g                                     1291
//