ID AY535016; SV 1; linear; genomic RNA; STD; VRL; 7651 BP. XX AC AY535016; XX DT 02-JUL-2004 (Rel. 80, Created) DT 02-JUL-2004 (Rel. 80, Last updated, Version 1) XX DE Lettuce ring necrosis virus segment RNA 1, complete sequence. XX KW . XX OS Lettuce ring necrosis virus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Milneviricetes; OC Serpentovirales; Aspiviridae; Ophiovirus. XX RN [1] RP 1-7651 RA Torok V.A., Vetten H.J.; RT "Characterization and genome organization of a new ophiovirus associated RT with lettuce ring necrosis"; RL Unpublished. XX RN [2] RP 1-7651 RA Torok V.A., Vetten H.J.; RT ; RL Submitted (29-JAN-2004) to the INSDC. RL Department of Microbiology, Plant Virology and Biosafety, Federal RL Biological Research Centre for Forestry and Agriculture, Messeweg 11-12, RL Braunschweig 38104, Germany XX DR MD5; 4a15d8c537cc167b62b5d9fe7af1890d. XX FH Key Location/Qualifiers FH FT source 1..7651 FT /organism="Lettuce ring necrosis virus" FT /segment="RNA 1" FT /isolate="Belg-2" FT /mol_type="genomic RNA" FT /country="Belgium" FT /isolation_source="Lactuca sativa" FT /db_xref="taxon:274495" FT CDS complement(125..6958) FT /codon_start=1 FT /product="261 kDa protein" FT /note="putative RNA dependent RNA polymerase" FT /db_xref="GOA:Q6E6Y6" FT /db_xref="InterPro:IPR014023" FT /db_xref="UniProtKB/TrEMBL:Q6E6Y6" FT /protein_id="AAT09109.1" FT /translation="MEEFIIKEKLSCFEYPNIRKLLANYGTEYSSLMKTIEAEKQREAK FT PVNTGFKHILTNFVTRSEEEVLSYNKIGTPTVILKIDTPYKEVTEENLQMILGTSYPTK FT WSNKSHLELYLFRNVFLALANVNKRELSFNTSQSSAIDLVQNLKNISIASPESSVLAKF FT AKKLLESEIKSIERSLLGTNEIRKSDFETTNDCNKNYWVLDIFEHINKTIVKHASARQN FT NTELEETVDFYEGKRINTKYFSVGCSMSHIEFERENMSLNIFVSSTLSGYFWDNDKIIH FT IGRPEMLQYGLFLADNLFSLSIIRSNVTEEEGKFIDFYVNLLNEESATRVGMGSLFETT FT CLLMSDQKTLSSSMPIIDNLVENISVSKELTEKLVSICLVSKPETCIKMSSIGKTLILA FT STDPGKGIGKYTQRTNRDNKVNGNTIRRLRSLFKQKVILSYIKKHGRVPNLLFVPEDLG FT AQLEMKAAGGNYLGQMVTEISRYDQVKLGKFLESGNEMNVQSRIIDKACTKDNYDPEGN FT SEREINYYIKNDMSSVFAEKLNIDKSKYKATERKVSILNRRDNILRMMDKHLIVRLSEK FT EREQKTSARFYGIASFKLKLWISSVMEMIKRAMKLLPGQMMTMTDDERREIMFKMSEKL FT MEKDAYSLFLDYSGHNTSQRPENCVFLLEEIANMYGFFEGSDQYREIVSLAYVFANIHV FT IVEDNWSDIVYYSHGQLGAIEGWLGGLWGIQSQLMLEDMFLQLGVKDYIGTTYSDDSCG FT VFTQQKLNVSKLNDIVRNVQKYGEDMGLIVKLSQTQVTNGRCSMLKEHYYKGEPIDMTL FT KKMMSISPNGPKVLFDETESVKLIDSGYTSSCNRSTKIELQTLLRNMRTVKLLSSSIRK FT LSESMIMDELSEIYRAGKHNYEISAKIAIRKISKTNKPFIPAPRSRNIEFYQFHSENQN FT VLDISLMLLYGPYTTYGYSMTPMPDVLISGYSLSNVKRISYLQGMLGTIGRNVLSKTIN FT LSSNALSYIDNPFPFTGGRRDPSLILKEEIGKNLTKYVTNPELLRFLTLYSKEDEIEYK FT KELIKVFSNSFSSRVASKFYESSLFAYVDEIISKIDNASTMKMLLGGKKMMNIINKAWT FT LNYKMKVKLTTTPICTYDELIYERNHKNFKLGKEEEIKLKFINIEEIPIMGKVIHSEYK FT SMIQPIFKGKNILTNEGRRQHAPQKTFYNAAKFDREVGVEGMFEHKLIFKAYDLVRYVK FT WIIMDQEKFSGGMSEEDKSKLIKVCDETLRTFTDAKYDDIESNVVCPKGGRYFHRASSG FT GFNPKTGDMSSNLLTSNYDVTGVDQLLSKTGGTDNNLNLQYLIIYIRVGLSLLEPKPHH FT LTSLTLTNDILYNIKDVSFKLSNLNNIGELKKLYNITSKERIRNKGKMYYNYSTFVSCD FT EDLNDKFLNHVSTMREYFIEQESSFRSVHSYMLDQMIVSPELISEVILEQLGGETYGLE FT GKESFFDKFYRYYKSLNIIANETPSRSVIRGLLYEELFKTNLNSRTNEIWTTELIRHGY FT SSSFKSSLMRLFLLSTSLSYRMSETNSGKMKLIVDKGRTFINSKQNYEKIRKGKCQFYI FT KDKRITEMIVNSFPTLGYNYEDISNEANNLCEDIDGIEFEQFRMGSYFLKMHQFYTKKS FT DKVHYGKVDFNELSISWIDLLDNLGVESALKGFETACSLMVTPDKVSSPTMSAVYPSAK FT GLIELLKGNNFIREEDKVIELCGGRGDFHLAMMEEKVNHTTLSREDGYNLAMRIPGMTS FT RKVNFNCFKQKDYIHYFDHDIILMDIPHITDKRDCLSSIIGDCKEPRKKIILRLNGLNK FT FLNSTILHEMSEAEINVCIPSLESPGYLYLTVDFSKDTETIQQKNEKTEKLGYNRSLLS FT SALINAVSKVDLKNTISIPAIRVQDQTEEIISDEVLEEMLLEEEPDYIHVNTEVRNKIK FT SREDFQDNLFVYIDDTTALKYRKKLIFIEERLASKGENREDTSIPPDLIALSRKIRGGD FT FSIIEVAPNLIKNNKLKIIRGMRGASHDELSEVISSIMSIKYNKRMAVECWKLLLKLSV FT QSDIVDSEKLTEIVMITKLNKTTERTINSSYRIASQAVLSYKSGRIIEGLLCVAGMDNV FT RKKAILNHKDKTTRTNLLHYKLYINRIMMMSKTFYTDPTFIGISRDEYLRIWNNIEEAE FT TNIDINRIHNIVREPSEMNQFFRELDKELFSFAGHFSDAVNDMNARIVSDIRPNEELVE FT ELKAFGLAASEEEIILNSQLQSHEELVDYYGEEEVYDAWGGEDWGDIED" FT CDS complement(7039..7620) FT /codon_start=1 FT /product="22 kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q6E6Y5" FT /protein_id="AAT09110.1" FT /translation="MDLLENATQGTESNCEQGKVLNLLKASGHILTEYTLHEKKVVERN FT SHEYQKLMKYKTSYTEEGRFLFGSWLLTSDKVPRIFDKKAVIIIKTLNSFVDVVLYDDI FT FISLTQKICDIFTSLFFQLYKVDAMISFGDKKIYRLENGYTIPHYSMILSKEEERSKRN FT LENALRTLSNDNEKKCDSTCSLSVSTMKHF" XX SQ Sequence 7651 BP; 2142 A; 1462 C; 1121 G; 2926 T; 0 other; tgatatattt ctaaaatata ttactgtttc acccactaag gcaaagagtc gcaatgactg 60 tagaaaggta cacacactct aaaacatcct ttgataaact caaatattac acacgcacta 120 aatatcaatc ttcaatgtct ccccaatctt cccctcccca tgcatcatag acttcttcct 180 ctccgtaata atcaactaat tcttcatgag attgtaattg tgaattaaga attatttcct 240 cttcactagc agctaaaccg aaagctttta gttcttctac caattcctca tttggtctta 300 tatcactaac tattctagca ttcatatcat taaccgcatc agaaaaatgt cccgcaaaag 360 agaaaagttc tttgtcaagt tccctgaaga actgattcat ttcactaggt tctctaacta 420 tattgtgtat cctattgata tcaatgtttg tttcagcttc ttcaatgttg ttccatattc 480 ttaaatattc atctcttgaa attccaataa acgtgggatc tgtgtaaaat gtcttgctca 540 tcatcattat cctgttaatg tataacttgt agtgtaaaag gtttgttctg gtagttttgt 600 ctttatggtt caatattgct ttcttcctca cattatccat acctgcaaca caaagcagac 660 cctcaataat cctgccggac ttatatgaga gcacagcttg agaagctata cggtatgatg 720 agtttattgt tctttctgta gtcttattca atttggttat cataactatt tcagtcaatt 780 tttccgaatc gactatatct gattgaacac tcaatttcag cagtaacttc caacactcaa 840 ctgccattct tttgttgtac tttattgaca taatagatga tatcacttca gacaattcat 900 catgtgatgc gcctctcatt cctctaatta ttttcagttt attattctta ataagatttg 960 gggccacttc tataattgaa aaatctcctc ctctaatctt tctgcttaat gcaattagat 1020 ctgggggtat tgaggtatcc tctctatttt ctccttttga agcaagtctt tcttcaatga 1080 aaataagctt ttttctgtat ttaagagcag tggtatcatc tatatataca aataagttat 1140 cttgaaagtc ttctcttgac ttaattttgt ttcttacttc tgtgtttaca tgaatgtaat 1200 ctggctcttc ttctaatagc atctcttcaa gaacttcgtc actgattatt tcttctgttt 1260 gatcttgcac cctgattgca ggaatactaa tagtgttttt cagatcgacc tttgagactg 1320 cattgataag tgcagatgac aataaagatc tgttgtaacc taatttctcg gtcttctcat 1380 ttttctgttg aatagtttct gtatccttcg aaaaatcaac tgttaggtaa aggtaccctg 1440 gtgactctaa tgaaggtata cacacattta tttcagcttc tgacatttca tgtaaaattg 1500 tactattcag aaatttgttc aatccattta atcttagtat aatctttttc cttggctctt 1560 tacagtcacc tataatactg cttaaacagt cacgtttatc agttatatgg gggatgtcca 1620 tcagaataat gtcatgatca aaataatgta tgtaatcttt ctgtttgaaa caattaaagt 1680 ttactttcct tgatgtcatg cctggtattc tcattgctaa gttataacca tcttccctag 1740 ataaggttgt gtgatttact ttctcttcca tcatagccag atgaaaatct cctctaccac 1800 cgcaaagttc tatcacttta tcttcctctc taatgaagtt gtttcctttt agcagttcaa 1860 ttaagccttt cgcactagga taaactgctg acattgtagg tgaggatact ttgtctggtg 1920 ttaccattag tgaacaagct gtctcaaatc cctttagagc agattcaaca ccaagattat 1980 caagcaagtc tatccaactg attgacaatt cattgaaatc tacctttcca taatgaactt 2040 tatctgattt tttagtgtaa aattgatgca tcttcaggaa gtatgatccc attcggaatt 2100 gttcaaattc aattccatca atatcttcac ataaattatt tgcttcatta cttatgtctt 2160 cgtaattgta tcctaaggtt ggaaatgagt tcactatcat ttctgttatt cttttatctt 2220 ttatgtaaaa ttgacatttt cctttcctta ttttctcata attttgtttg ctgttaataa 2280 aagttcttcc tttatctaca attagcttca ttttacctga gttagtttcg gacatcctgt 2340 aagatagtga tgttgataag aggaacaacc tcatcaacga tgacttgaag ctacttgaat 2400 aaccatgtct tatcagctct gtggtccata tttcattggt tcttgaattt agatttgtct 2460 taaacaattc ttcatacagc aaccctctta tgacagatct tgatggtgtt tcatttgcta 2520 tgatatttaa tgacttgtaa tagcgataaa acttatcaaa gaaactctct tttccctcaa 2580 gcccatatgt ttcacctcct agttgttcta gaattacttc tgagattaat tctgggctca 2640 ctatcatttg atccaacata tatgaatgaa cagatctaaa tgagctttct tgttctataa 2700 aatactctct cattgtagag acatgattta ggaatttgtc attcaggtct tcatcacaag 2760 atacaaatgt ggagtaattg taatacattt ttcctttgtt tctgattctc tcttttgatg 2820 taatattgta caacttttta agttctccaa tgttgtttaa attagataat ttgaaactga 2880 catcttttat attgtacagt atatcatttg tcaatgttag tgaagtcaaa tgatgtggtt 2940 taggttcgag taatgataag cccactctta tgtaaattat aaggtattgt aaattcaaat 3000 tgttgtctgt accaccggtt ttcgaaagca attgatctac accagtcaca tcataatttg 3060 aggtcaataa gtttgaagac atgtcgcctg tttttggatt aaatccacct gaagatgctc 3120 tgtgaaagta acgtccacct tttggacaaa ctacatttga ttctatgtca tcatattttg 3180 catcggtgaa tgttcttaat gtttcatcac aaactttgat tagcttggat ttgtcttcct 3240 ctgacatccc tcctgaaaac ttttcttgat ccattatgat ccacttaaca tacctcacta 3300 aatcatatgc cttgaaaatt agcttatgtt caaacattcc ttctacacct acttctctat 3360 caaatttcgc tgcgttataa aatgttttct gtggtgcatg ctgtcttctt ccttcatttg 3420 ttaagatgtt ttttcccttg aagatgggtt gtatcatact tttatattca gaatgaatca 3480 ctttacccat gataggtatt tcttcaatgt taatgaattt caatttgatc tcttcttctt 3540 tgcctagttt gaaattcttg tgattcctct catatattaa ttcatcatat gtacaaattg 3600 gggttgttgt caattttact ttcattttgt aatttagtgt ccatgctttg tttatgatgt 3660 tcatcatttt cttgcctcct aataacattt tcattgttga tgcattgtca atctttgata 3720 tgatctcatc gacataagca aataaactgg attcgtaaaa tttgcttgct acccttgatg 3780 aaaaagaatt tgagaacact ttgatcaatt cttttttgta ctcaatttca tcttcctttg 3840 agtatagtgt caagaatctc aaaagttctg ggtttgtaac atattttgtg agatttttcc 3900 cgatttcttc ttttagtatt aatgatggat ccctccttcc accagtaaag ggaaaaggat 3960 tatctatata agatagtgca ttcgatgata aatttattgt cttgctcaaa acatttctac 4020 caatagttcc taacatccct tgaagataag aaatcctttt cacattggac aggctgtagc 4080 cagagattag cacgtctggc attggtgtca tagaataccc ataagtcgta taaggtccat 4140 acaaaagcat taaactgatg tccagaacat tttgattttc tgagtggaac tggtaaaatt 4200 ctatgttcct tgatctcggt gctggtataa atggcttatt tgtcttgctt attttccgaa 4260 ttgcaatttt tgctgatatc tcatagttgt gttttccagc acgataaatt tcacttaatt 4320 catccattat cattgattca gataactttc ttattgagct agaaagcaac tttactgttc 4380 tcatgttcct tagcaaggtt tgcaattcta tttttgtgga tctattgcaa ctcgaagtat 4440 atcctgaatc tatcagtttc actgattctg tttcatcaaa taacaccttt ggtccatttg 4500 gacttattga catcattttt ttcagagtca tatcgattgg ttctcctttg taataatgtt 4560 ctttaagcat cgaacacctt ccattggtaa cctgagtttg cgataatttt actatcaatc 4620 ccatatcttc tccgtacttt tgaacatttc taactatgtc attaagctta ctaacattta 4680 atttttgttg tgtaaatacg ccacaagaat cgtctgaata tgtggtccca atataatctt 4740 tgacacctaa ttgaagaaac atgtcctcaa gcatcagttg cgattgaatt ccccataatc 4800 cacccaacca accttcaatt gcacctaatt gaccgtgaga gtaatataca atgtcactcc 4860 aattgtcttc gacaatgaca tgtatgttag caaaaacata ggctaaagat actatttctc 4920 tgtattgatc actcccttca aagaagccat acatgtttgc tatttcttca agtagaaaaa 4980 cacaattttc tggccgttgt gaggtattat gtccagaata atccaaaaag agagaataag 5040 cgtctttttc catcaacttt tctgacattt tgaacattat ttctcttctt tcatcatcag 5100 tcattgtcat catttggcca ggcaacaatt tcatagctct ctttatcatt tccattacgg 5160 aactgatcca gagtttcaat ttaaatgacg caattccata aaaacgtgca gatgtcttct 5220 gttctctctc tttttcagac aatcttacta tcagatgttt atccatcatt cttagaatat 5280 tgtcccttcg attcagtatg gagactttcc tttctgttgc tttatatttg cttttgtcaa 5340 tgtttagctt ttctgcgaac acagaagaca tatcattttt gatgtaataa ttaatttctc 5400 tttctgaatt tccttcagga tcataattat ctttcgtaca ggctttatca attattcttg 5460 actgaacatt catctcattg cctgactcta ggaactttcc caacttcact tgatcatatc 5520 tgcttatttc tgttaccatt tgccccagat aattgcctcc tgcagctttc atttcaagct 5580 gtgcaccaag atcttcagga acaaataaaa ggttgggaac tcgtccatgt ttcttgatgt 5640 atgacagtat tactttctgt ttgaagagcg atctcaacct ccttatcgtg tttccattca 5700 ctttgttatc tctgtttgtc ctttgtgtat acttgcctat tcctttccca ggatcagtac 5760 ttgccaaaat cagtgtttta cctatagagg acatttttat gcaagtttca ggttttgaga 5820 caagacatat gcttacgagt ttttcagtta actccttaga aacacttatg ttctcgacta 5880 aattgtctat tattggcatg cttgaagaca aggtcttttg atcggacatc agtaaacaag 5940 tagtctcaaa taagcttccc atacctactc ttgtggctga ttcttcattt aacagattga 6000 catagaagtc aatgaattta ccttcttcct cagtgacatt cgatctaatt atactgagtg 6060 aaaataggtt atctgctaaa aataacccat attgtaacat ctcgggtctt ccgatatgga 6120 ttatcttatc attatcccaa aaatatcctg acaatgtaga cgatacaaat atgttcagag 6180 acatattttc tctctcaaat tcaatatgac tcatagaaca accaactgaa aaatacttag 6240 tgtttatcct ttttccttca tagaagtcga ctgtttcttc gagttctgtg ttattttgtc 6300 tcgcacttgc atgcttcact attgtcttat ttatatgttc aaaaatatct agaacccaat 6360 agtttttatt gcaatcattg gtagtctcaa agtcactttt acgtatctcg ttagttccta 6420 agagactcct ttctatggat ttgatttcac tttccaaaag tttcttagcg aatttggcta 6480 aaacggagct ttcgggtgat gcaatactga tattttttag attttgaaca agatctattg 6540 cagaggattg acttgtatta aaagaaagtt ctcttttatt tacatttgcc aatgccagaa 6600 acacatttct aaacaagtac agttccaaat gactcttatt agaccatttt gtagggtaac 6660 ttgtgcctaa aatcatctgg agattttctt cagtcacctc tttatatggt gtatcaattt 6720 taagtataac tgtaggagtc cctatcttat tataggacag tacttcttct tctgatcttg 6780 tgacaaaatt tgtcagaata tgtttgaatc ctgtgttgac aggttttgct tctctctgtt 6840 tttctgcttc tatagttttc atcaatgaac tgtattcagt tccatagttt gctaacaact 6900 ttcttatgtt tgggtattca aaacaagaaa gtttctcttt gatgatgaat tcttccatgc 6960 tcttcggttt tcgatgtcaa ggtttaggca atgttgatgt tgttaattct tcaccctttg 7020 tgttgtttat ttaaaacatc aaaagtgttt catcgtgctc acagatagag aacaagtaga 7080 atcacatttc ttttcattat catttgataa cgtcctgagg gcattttcca aatttctttt 7140 agacctttct tcttctttgc tcaaaatcat agagtagtga ggaatggtgt agccattttc 7200 caggcggtat atctttttgt ctccaaaact tatcatggca tcaaccttat acagttggaa 7260 gaacaaggaa gtgaatatat cacatatctt ttgagtcaaa gaaataaaaa tgtcatcata 7320 aagtacaaca tcgacaaaag aatttagggt cttgatgatg ataacggctt ttttgtcgaa 7380 aattcttggt accttatcag aagtcagcaa ccatgagcca aaaaggaatc ttccttcttc 7440 agtataactt gttttgtatt tcatcaattt ttgatattca tgtgaattcc tttccacaac 7500 tttcttttca tggagtgtat attcagttaa tatatgacca ctggctttca ataaattcaa 7560 cacttttcct tgctcacagt tggattcggt tccttgtgtt gcattttcta agaggtccat 7620 ttctgcagta gctttttcaa aaaaagtatc a 7651 //