ID AY530931; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AY530931; XX DT 04-MAR-2004 (Rel. 79, Created) DT 23-APR-2009 (Rel. 100, Last updated, Version 2) XX DE Tomato yellow leaf curl virus, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RX PUBMED; 18943768. RA Yang Y., Sherwood T.A., Patte C.P., Hiebert E., Polston J.E.; RT "Use of Tomato yellow leaf curl virus (TYLCV) Rep Gene Sequences to RT Engineer TYLCV Resistance in Tomato"; RL Phytopathology 94(5):490-496(2004). XX RN [2] RP 1-2781 RA Polston J.E., Patte C.P.; RT ; RL Submitted (21-JAN-2004) to the INSDC. RL Plant Pathology, University of Florida, 1453 Fifield Hall, Gainesville, FL RL 32611 0680, USA XX DR MD5; ca1b106bf6afb785bc24d1a2e11673f9. DR EuropePMC; PMC2074955; 17827315. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC4802622; 27000806. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /mol_type="genomic DNA" FT /country="USA:Florida" FT /db_xref="taxon:10832" FT CDS 148..498 FT /codon_start=1 FT /product="pre-coat protein V2" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="AAS46327.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT CDS 308..1084 FT /codon_start=1 FT /product="coat protein V1" FT /db_xref="GOA:Q6QP63" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6QP63" FT /protein_id="AAS46328.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /codon_start=1 FT /product="replication enhancement protein C3" FT /db_xref="GOA:Q6QP62" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6QP62" FT /protein_id="AAS46332.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITDHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1226..1633) FT /codon_start=1 FT /product="C2 TRAP" FT /note="transactivating protein; suppressor of gene FT silencing" FT /db_xref="GOA:Q6QP61" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6QP61" FT /protein_id="AAS46331.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542..2615) FT /codon_start=1 FT /product="replication-associated protein C1" FT /db_xref="GOA:Q6QP60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6QP60" FT /protein_id="AAS46329.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAGALNSGSKSEALNILKEKAPKDYILQFHNL FT NSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT CDS complement(2171..2464) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6QP59" FT /protein_id="AAS46330.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHTPEHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 758 A; 538 C; 605 G; 880 T; 0 other; accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttacac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag caaccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcagcgg gatgatatta agcacactgg tgttgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtcggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 ctttttggtc cgtgatagaa ggccctatgg aagcagtcca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aactgtgaag aatgatttgc gtgataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcca ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtggtct gttatcttga aatagagggg attgtttatc tcccaaataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagacacg acgttctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaatttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttttctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgctccggcg 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgtttggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggaattctct gcaaactttg atgtattttt tatttgttgg ggtttctatg 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taattcttgg catatatttt aaataaacga ggcatgttga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tactaatacc tcgacaccta atggcaattt 2700 ggtaatttca taaatgttca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggtcatc cgtataatat t 2781 //