ID AY509927; SV 1; linear; genomic RNA; STD; VRL; 6410 BP. XX AC AY509927; XX DT 01-AUG-2004 (Rel. 80, Created) DT 22-MAY-2005 (Rel. 83, Last updated, Version 3) XX DE Pepino mosaic virus strain US2, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6410 RX DOI; 10.1007/s00705-005-0495-z. RX PUBMED; 15750864. RA Maroon-Lango C.J., Guaragna M.A., Jordan R.L., Hammond J., Bandla M., RA Marquardt S.; RT "Two unique US isolates of Pepino mosaic virus from a limited source of RT pooled tomato tissue are distinct from a third (European-like) US isolate"; RL Arch. Virol. 150(6):1187-1201(2005). XX RN [2] RP 1-6410 RA Maroon-Lango C.J., Guaragna M.A., Jordan R.L., Hammond J., Bandla M., RA Marquardt S.; RT ; RL Submitted (19-DEC-2003) to the INSDC. RL Floral and Nursery Plants Research Unit, US National Arboretum, USDA-ARS, RL 10300 Baltimore Ave, Beltsville, MD 20705, USA XX DR MD5; e0dc55854dd0d22b5e83c0ffd559dcc5. DR EuropePMC; PMC3132167; 21702943. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6410 FT /organism="Pepino mosaic virus" FT /strain="US2" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="Lycopersicon esculentum" FT /db_xref="taxon:112229" FT 5'UTR 1..84 FT gene 85..4401 FT /gene="RdRp" FT CDS 85..4401 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="ORF 1" FT /db_xref="GOA:Q699Z9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q699Z9" FT /protein_id="AAS79814.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFVGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNPEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAADNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KVQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLCK FT LPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNEAYIASLDEAVAYYSNYCGFYLNATHRNVRSLANKLGVYSEKEGXLKITFASNAL FT QKCKVPILVPSQMKKNAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTCL FT SRAXDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPVEPEAP FT ATHFPVSNGNNLEKLASTLPEKFAREIYDKHHGYSNTIQTENPIVQLFQHQQAKDETLF FT WATIEARLSITTPDANLREFTLKKDVGDILFFNYHSAMCLPADPVDFEPRTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFEPNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNNFVLNGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRYHLSSAVKQVYAGDDMALDGVVMEKPSFKKLQSKLKLTSKTLFPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDKLHEYL FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT gene 4426..5130 FT /gene="TGB1" FT CDS 4426..5130 FT /codon_start=1 FT /gene="TGB1" FT /product="triple gene block 1 protein" FT /note="ORF 2" FT /db_xref="GOA:Q699Z8" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q699Z8" FT /protein_id="AAS79815.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGVIVVHGIAGTGKTTLLRTLFSA FT YPNLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESYQEPTLALFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 5111..5482 FT /gene="TGB2" FT CDS 5111..5482 FT /codon_start=1 FT /gene="TGB2" FT /product="triple gene block 2 protein" FT /note="ORF 3" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="AAS79816.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 5334..5582 FT /gene="TGB3" FT CDS 5334..5582 FT /codon_start=1 FT /gene="TGB3" FT /product="triple gene block 3 protein" FT /note="ORF 4" FT /db_xref="GOA:Q699Z6" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q699Z6" FT /protein_id="AAS79817.1" FT /translation="MSSYSSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 5628..6341 FT /gene="CP" FT CDS 5628..6341 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF 5" FT /db_xref="GOA:Q699Z5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q699Z5" FT /protein_id="AAS79818.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6342..6410 XX SQ Sequence 6410 BP; 2035 A; 1461 C; 1167 G; 1745 T; 2 other; gaaaacaaaa cataaccaaa acaacaaagt cataataaca ctacataacc acgcggaaaa 60 acagctaacg cactttaccg cattatgtct cgtgttagaa atactttgga aaagatcagg 120 gacccacaag tacaatctag catttgtgaa gccgcttacc aacatgttag acctgtgctc 180 aaggaatccc taatcaactg tccttatgcg cttaatgact atgaagcaga cacccttgag 240 aatttaggtg tcacaataaa cccccatgca atccaaacac atactcatgc ggcagctaaa 300 gttgtggaaa atagaatgct cgaaattgtt ggacaccact tgcccaagga cgagaaagtt 360 accttcattt tcctcaaaag aagcaaactg agatacatgc gaagagctgc tgtacataaa 420 gatgtttttg ttaatcacaa tatagaaccc aaggatttct tcaggtatga tgaggaatct 480 acatctacta gtttctccgt gaacaccagg atcgcttaca tctccgattc tctacatttc 540 atggaaccag ctgatgtgac ccacctcttt gaccgttgcc acaatcttaa aacactgatg 600 gcaactgttg ttttacctgt tgaagccatc cacaaacaaa catctttatt cccagcgata 660 tactccatta attacaatga agaaggtttt gagtatatcc ctggttctca tggtggaggg 720 gcatactttc ataagtatga aacattagac tggctcaaat actctagatt cgttggccag 780 gaccccttaa ctggactccg atacaccata accattcaaa tggtggagag tttaggagcc 840 aaccatcttt tcctcttcca aagaggaaat tttgaaacac ctttatacag gacgtttcaa 900 aaaaatagct ttgtgacctt tcctaacatc ttccatcccc aacatgttaa tgccacaaag 960 cccatgccaa gatccagggc aattcagctg tatttatatg tcaaatctgt caataaggtg 1020 acacaaagag atatctttgc gaaagtaagg caacttatat ctacagctga acttgaattg 1080 tatgaccctg atgaacttac acatattgtc aattatttcg catatgtctc agaactaagc 1140 tcaatcaacg actatgacaa tatgctcaaa tcaagttttt tcaaaaaact tgttgcaccc 1200 atgcaacatg actggaggtg catgattgaa ttctttcggg gaaaaagtga tttcaatcaa 1260 cttttaactg ctcttcaatg gaaagacttc tcttacacca ttaaaactga agagttagtt 1320 attgctacac acactgaaat tggccaggca atctgtaaag ctgcgaccac atacaaagaa 1380 agaagacaat tgaccaattt agtcaaacaa ggcgcagtaa cattagctga tttcaaagaa 1440 gcggaccagc atgtggagta cactcacttt gatcctgagt ttaaatccac tgttgacccc 1500 caccggagct atgaaaatgc catcaacaat cttggcattg agattaatga ggatgtacct 1560 gaaagttccg gcactaatga aacattgctt aacaatgaaa tatctttagc aatgtcatct 1620 gctgaacatg tgcaagctgt tcaagaaatt gagtctttac tctctaaccc cgaagcggca 1680 ccaatattgc cccctgcaca tgttaaaaca tgggctagcc ttgcatctga cacttccagc 1740 actaaaaacc gtgaaatcga agatatagtg gctaagctgg aaatacaaag aaatgaagct 1800 agttgcagct accttcaacc aaataaggaa ttgtcaaaac ccaaggctgc tgataacaat 1860 ctcccctgga atgcttggat cccattgctt aatgcacacg gcttcaaagg agatcaatta 1920 caatacggcc cagatggtaa cttgatacag cccatccaag acattaacaa ttcacagcct 1980 agatctgact atccgtcttc tctgccatgt gagcttgtgg aaactttgag gaaaattaag 2040 cgtgctgtct atgccatccc aataagccac aggagggcta gtgcttacag ttctgacatc 2100 aaaaataaca gaactggcaa acttctctgc aaccaaagca aagaatggaa agaaagcttt 2160 gctttcaaag tgcaacatga agacatcgtc aaatcaggtg ttgtcataca tggttgcgga 2220 ggttctggca aatcccaggc attacaaaac ttcttgagaa cattgggtga ttcaaatgat 2280 tgctgtactg ttgtagtacc cactgtagag ctcaggaatg actgggttaa caaattgtgc 2340 aagttgccta tggaacacat caaaacattt gaaaaagcaa tgattcaacc aggctttcct 2400 gttgtcattt ttgacgacta tactaagctg ccacccggtt acattgaagc ttatctgttc 2460 catcatgcca acactgaact cttcatcctc actggtgact ctagacaaag tgtatatcat 2520 gagtccaaca atgaagctta cattgcctct cttgatgaag ctgttgccta ctattccaac 2580 tactgtggtt tctatttgaa cgctacgcac agaaatgtac gtagtttagc taacaagttg 2640 ggagtgtaca gtgaaaaaga aggacamctc aaaattactt ttgcatccaa tgctctacaa 2700 aaatgcaaag tacccatctt ggtgccctct cagatgaaga aaaatgcaat gcaagacatt 2760 ggccataaag caatgactta tgcaggatgt caaggactta ctgctccaag agttcaaatt 2820 ttgcttgaca accacacaca gcattgctcg gacagagttc tttacacatg tctttcacga 2880 gctrtggatt ctatccattt tatcaatact ggccccaaca attccgaatt ttgggataag 2940 cttgaagcta caccatacct caaagccttt attgatacat accgggatga aaagactgag 3000 atgttgaatt caaaacctgc agatgacagc cctgtggaac ctgaagctcc tgctactcat 3060 ttccccgtct ctaacggcaa caacttagag aaattagctt caacactacc tgaaaagttt 3120 gctcgggaga tctatgataa acatcatggt tattccaaca ccatacaaac agagaacccc 3180 atagtacaac ttttccaaca tcagcaggca aaagatgaaa ctctcttttg ggcaacaatt 3240 gaggcaagac tttctataac cacaccagat gctaacctca gagaatttac tttgaagaaa 3300 gacgttggag atattctgtt ctttaactat cactcagcaa tgtgtctgcc agctgaccct 3360 gtcgacttcg agccaagaac ttgggaaata tgtgcagctg aagtcaagaa tacataccta 3420 gcaaaaccaa tggctaattt gataaatgcc gctagtcgac aatctcctga cttcgagcct 3480 aacaagatct cactgttttt gaagtcacaa tgggttaaga aagtagagaa attgggagca 3540 atcaaatcaa agcctgggca aacaattgcg gcttttatgc agcaaaccgt catgctgtac 3600 ggaactatgg ctagatactt aagaaaaatg agacaaagat ttcaaccaaa acacattttc 3660 atcaattgtg aaactacaac tgatgatctg aataattttg ttctcaatgg ttggaacttt 3720 aatcgaactg ctcagactaa tgatttcact gcatttgatc aatcccaaga tggagctatg 3780 ttacaatttg aagtcatgaa ggctaaattc ttcaacattc ctgcagacgt gattgaaggg 3840 tatatcaaca ttaagcttaa cgctaaaatt ttcctaggta ccctttcaat tatgaggtta 3900 tcaggtgaag gtcccacatt tgatgcaaac actgaatgct ctattgctta cacagcaaca 3960 agataccatc tgagttcagc agtgaaacaa gtttacgctg gtgatgacat ggctcttgac 4020 ggagtggtca tggaaaaacc ctcctttaag aaactacaga gcaagcttaa attgacatca 4080 aaaacattgt ttccaaaaca agttaagggt gattatgccg aattttgtgg gtggactttt 4140 accccaggtg ggattattaa aaatcctttg aaaatgcatg catccatcat gttacaagaa 4200 gcaataggta acctccacac tgctgctagg tcgtatgcaa tagacatgaa gcattcatac 4260 caaatgggag ataaattgca tgaatacctt actcctgatg aagctgagca acatttcttg 4320 gctgttcgca aattgcacaa actccaccaa ggtgaagcca tgagacttgg ggagaagagc 4380 cccccaaaag caacacattg acgggttaag tttcccctgt tcgaaatgga aagatccact 4440 ctaataaatt tacttcaact gcaccacttt gaacctaaac tcagcgttga aggagttatt 4500 gttgtacacg gaatcgctgg aacagggaaa actaccctac ttagaacttt attttccgct 4560 tacccgaact tagttatagg atcacctagg ccttgttatt tagataaagc taataaaatt 4620 tcacaagttt gtttatcttg ctttccaaac accctttgtg atattgtcga tgagtaccat 4680 cttctagaaa gttaccaaga acctactttg gctttgtttg gagacccttg tcagtgtact 4740 tacattgaaa ggttgagaac acccaactac acatccttca gaacacaccg atttggcaaa 4800 tccactgctg ctctactaaa caagttattt gatcttaaca ttgagtcagt caaagcacaa 4860 gacgacacag tagaatactt tgatcctttc gcagtggacc cctctgaaca catttctgct 4920 tcagaaaaag aagttttgga atttgtaggt gatcaagttg agactacaag ctctgaagaa 4980 ctagctggtc tcgagtttag tgaagttact ttctactgta ccacacttgc tggtgctgtt 5040 caagaaaatc ctgccaaaac cttcatttca ctcactagac acacttcaaa gctcacaatt 5100 ggtgaactaa atgccaggtc tgactcctag agctgatctt actgacacgt ataaaatcat 5160 tgctatagcc tttctactgt cagcttgcat ttacttccaa aacagtcatt atcaaccagt 5220 tgcaggtgat aatttgcaca gactaccctt tggtggtcag tatcaagacg gaactaagaa 5280 gatttcttac tttccgcagc aacaatccta ctttcactca ggaaacaagc ttaatgtcct 5340 catactcatc ttcattctta cattgggtat tgtcctcacc aataaattta gttttagcat 5400 tagccgtaat actcaccagc atcattgcta caacacacat tctgcaaccc aaacaggtca 5460 atcagtgcca ggtcatcatt gatggtgcag ccatagttat aacaaattgt ccaaacacac 5520 ccgaagttct taaagcaatc aacttctccc cttggaacgg gttaagtttt cctcaattgt 5580 gaaatcatac ttgttatcta gttaaattca aacaatttaa ctcaactatg gaaaaccaac 5640 ctacagcttc taacccatca gatgcaccac caactgctgc tcaagctggt gcccagagcc 5700 cagccgactt ctcaaatcct aatacagctc cttccctaag tgatttgaag aagatcaaat 5760 acgtgtcaac tgtcacttca gttgccacgc ctgctgaaat tgaggccctt ggcaagatct 5820 ttactgccat gggtttagca gccaatgaga ccggacctgc catgtgggac ctcgctcgtg 5880 cttatgctga tgtgcaaagt tcaaaatctg cacaacttat aggtgccaca ccatccaacc 5940 ctgctttgtc tagacgtgca cttgctgcac agtttgatcg tatcaatatc acacccagac 6000 aattctgcat gtattttgca aaaattgttt ggaacatact gttagacagc aatgtgccac 6060 ctgccaactg ggcaaaattg ggctatcagg aagataccaa gtttgctgct tttgacttct 6120 ttgatggagt cacaaatcca gctagtctac agcctgcaga tggcctaatc aggcagccca 6180 atgaaaaaga gcttgctgct cactcggttg ctaaatatgg tgcccttgcc cgccagaaaa 6240 tatccactgg taactacatc accacccttg gtgaagttac acgtggtcac atgggcggcg 6300 ccaacactat gtacgcaatt gatgcacctc ctgaacttta aacactcgaa acttaatcag 6360 agtggggttt tctatagttt attttccctt agtatctaaa tctactaaat 6410 //