ID AY508993; SV 2; circular; genomic DNA; STD; VRL; 2575 BP. XX AC AY508993; XX DT 19-JAN-2004 (Rel. 78, Created) DT 29-JAN-2013 (Rel. 115, Last updated, Version 4) XX DE Tomato yellow margin leaf curl virus segment DNA A, complete sequence. XX KW . XX OS Tomato yellow margin leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2575 RX DOI; 10.1094/PD-90-0061. RX AGRICOLA; IND43786132. RA Nava A.R., Patte C.P., Hiebert E., Palston J.E.; RT "Detection and variability of begomoviruses in tomato from the Andean RT states of Venezuela"; RL Plant Dis. 90(1):61-66(2006). XX RN [2] RP 1-2575 RX DOI; 10.1007/s00705-012-1501-x. RX PUBMED; 23064695. RA Nava A., Londono A., Polston J.E.; RT "Characterization and distribution of tomato yellow margin leaf curl virus, RT a begomovirus from Venezuela"; RL Arch. Virol. 158(2):399-406(2013). XX RN [3] RP 1-2575 RA Nava A.R., Polston J.E., Patte C.P., Hiebert E.; RT ; RL Submitted (18-DEC-2003) to the INSDC. RL Plant Pathology, University of Florida, 1453 Fifield Hall, Gainesville, FL RL 32611-0680, USA XX RN [4] RC Sequence update by submitter RP 1-2575 RA Nava A.R., Polston J.E., Patte C.P., Hiebert E.; RT ; RL Submitted (14-SEP-2012) to the INSDC. RL Plant Pathology, University of Florida, 1453 Fifield Hall, Gainesville, FL RL 32611-0680, USA XX DR MD5; b728355a054077171298a4e84f46326d. XX CC On Sep 14, 2012 this sequence version replaced gi:40850598. XX FH Key Location/Qualifiers FH FT source 1..2575 FT /organism="Tomato yellow margin leaf curl virus" FT /segment="DNA A" FT /host="tomato, cv. Rio Grande" FT /isolate="virus 57" FT /mol_type="genomic DNA" FT /country="Venezuela:Merida" FT /db_xref="taxon:260909" FT gene 186..932 FT /gene="cp" FT CDS 186..932 FT /codon_start=1 FT /gene="cp" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:Q6R7R1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q6R7R1" FT /protein_id="AAR95974.1" FT /translation="MPKRDAPWRLSAGTTKVSRSSNYSPRSNMGPKASAWVNRPMYRKP FT RIYRTLRGPDIPKGCEGPCKVQSFEQRHDISHVGKVLCVSDVTRGNGITHRVGKRFCVK FT SVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKND FT LRDRFQVMHKFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLY FT MACTHASNPVYATLKIRIYFYDSITN" FT gene complement(929..1327) FT /gene="ren" FT CDS complement(929..1327) FT /codon_start=1 FT /gene="ren" FT /product="REn" FT /note="replication-enhancer protein" FT /db_xref="GOA:Q6R7R0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6R7R0" FT /protein_id="AAR95977.1" FT /translation="MDSRTGETITARQAQNGVFIWEVPNPLFFKIQRVEDPLYTTTRVY FT HIQIRFNHNLRKALTLHKAYLNFQVWTTSVQASGTTYLNRFKHYVLLYLDQLGVISINN FT VIRAVSYATDRKYVNHVLEDHEIKFKLY" FT gene complement(1074..1460) FT /gene="trap" FT CDS complement(1074..1460) FT /codon_start=1 FT /gene="trap" FT /product="TrAP" FT /note="transcriptional-activator protein" FT /db_xref="GOA:Q6R7Q9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6R7Q9" FT /protein_id="AAR95976.1" FT /translation="MQNSSSSTPPSIKPTHRLAKRRPRRKRIDLSCGCTIYVHLLCSNY FT GFTHRGNHHCSSGTEWRFYLGGAESPLFQDSTSGGPSVHNDQSVPHPNQVQPQPEEGID FT STQGLSELPSLDDISSSFWDDIFK" FT gene complement(1423..2457) FT /gene="rep" FT CDS complement(1423..2457) FT /codon_start=1 FT /gene="rep" FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:Q6R7Q8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6R7Q8" FT /protein_id="AAR95975.1" FT /translation="MPTARAFKINAKNYFLTYPKCSLSKEEALSQLQNLITPTNKKFIK FT VCKELHEDGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTIQWGEFQIDGRSARGGQQSANDTYAKALNARSSEEALQIIKEEQPQHFFLQHH FT NLLANATKIFRKPPEPWVPPFRLSSFINVPVDMQEWADDYFGRDSAARPERPISLIVEG FT DSRTGKTMWARALGSHNYLSGHMDFNSRVYSNDVEYNVIDDVNPQYLKIKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKRYLDKEENTSLRAWTLHNAKFIFLD FT SPLY" FT gene complement(2043..2306) FT /gene="ac4" FT CDS complement(2043..2306) FT /codon_start=1 FT /gene="ac4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6R7Q7" FT /protein_id="AAR95978.1" FT /translation="MKMGNRICMCLSSSKASTSAKITDSSIWFPQPGQHISIRTFRELN FT PAPMSSPTLIRTETQFNGGNSRSTEDLLEEVSNLLMTHTQRH" XX SQ Sequence 2575 BP; 670 A; 529 C; 582 G; 794 T; 0 other; accggatggc cgcgcgattt tttgcccccc ctcctcctcg agatgagcgc ctgctttttg 60 ggaccactta ataaagcaac caatcagatt gctcctggag agttaaatta ttaattcgtg 120 gtccccaagt tccgcctttt cctttataaa ggctgcaagt gataatgatt aatcaataat 180 tcaaaatgcc taagcgcgat gctccttggc gcttatcggc tgggaccact aaggtcagtc 240 gttcctccaa ttattcccct aggagtaata tgggcccaaa ggcctctgct tgggttaata 300 ggcccatgta caggaagccc agaatttaca ggacgttaag ggggcctgat attcctaagg 360 gttgtgaagg cccatgtaaa gttcagtcct tcgagcagag gcatgatatt tctcatgttg 420 gcaaggtgct ttgtgtttct gatgtgacac gtggtaacgg tattacccac cgtgtaggca 480 agaggttctg tgtcaagtct gtgtatatct taggcaaggt atggatggac gagaatatca 540 agttgaagaa ccacaccaac agcgtcatgt tctggttggt cagagaccgg agaccttatg 600 gaacccccat ggactttggc caagtgttta acatgtttga taacgagcca agtactgcca 660 ctgtgaagaa cgatctccgt gatcgtttcc aggttatgca caagttttat gctaaggtta 720 ccggtggaca atatgccagc aatgagcaag ccttggtcag gagattctgg aaggtcaaca 780 accatgtggt gtacaaccat caagaagcag ggaaatacga gaaccacact gagaatgctc 840 tattattgta tatggcatgt acccatgcgt ctaatcctgt gtatgctaca ttaaaaattc 900 ggatctattt ttatgattcg ataacaaatt aataaagttt gaattttatt tcatgatctt 960 caagcacatg gtttacatat tttctgtctg ttgcataact aacagctctg attacattgt 1020 ttattgaaat aactcctaac tgatctaaat acaacaagac ataatgtttg aatctattta 1080 aatatgtcgt cccagaagct tgaactgatg tcgtccagac ttggaagttc agataggcct 1140 tgtgtagagt caatgccttc ctcaggttgt ggttgaacct gatttggatg tggtacactc 1200 tggtcgttgt gtacagaggg tcctccactc gttgaatctt gaaaaagagg ggattcggca 1260 cctcccagat aaaaacgcca ttctgtgcct gacgagcagt gatggtttcc cctgtgcgtg 1320 aatccatagt tgctgcagag gagatggacg tatatggtac acccgcagct taggtctatt 1380 cttttacgtc ggggtcttct ctttgcaaga cgatgtgttg gtttaataga ggggggagtc 1440 gaggaagatg aattttgcat tatggagtgt ccacgctctg agagatgtat tttcctcttt 1500 gtctaggtac cttttatagg aagacccctc ccctggattg caaagcacga tagcgggaat 1560 tccaccttta atttgaacag gctttccata tttacagttg gactgccagt ctttctgggc 1620 cccaatcaat tctttccagt gctttatttt taaatattgt gggttgacat catcaatgac 1680 gttatactct acatcgtttg agtaaaccct agaattgaaa tccatgtgac cacttaggta 1740 attatgagaa cctaatgcac gtgcccacat tgttttccct gttctagaat caccttcaac 1800 gattaaactt ataggtcttt ctggccgcgc agcggaatcc ctcccaaaat aatcatctgc 1860 ccattcttgc atatcaactg gaacatttat gaatgacgat agtcgaaaag gagggaccca 1920 tggttcagga ggtttacgaa atattttggt tgcattggct aacaagttat gatgttgaag 1980 aaagaagtgt tgcggttgtt cttcctttat aatctgcaac gcttcttcag atgacctagc 2040 atttaatgcc tttgcgtatg tgtcattagc agattgctga cctcctctag cagatcttcc 2100 gtcgatctgg aattcccccc attgaattgt gtctccgtcc ttatcaatgt aggacttgac 2160 atcggagctg gatttagctc cctgaatgtt cggatggaaa tgtgttgacc tggttgggga 2220 aaccagatcg aagaatctgt tatttttgca ctggtacttg ccttcgaact ggataagcac 2280 atgcagatgc ggttccccat cttcatgcaa ttctttgcac actttaatga atttcttgtt 2340 tgtcggagtg attaggtttt gtaattggga aagtgcttct tctttggata gagagcactt 2400 ggggtatgta aggaaataat tcttggcatt aattttaaag gcacgtgcag taggcatgct 2460 tggacaccaa ttggagtctc tcaactctct ctaatgaatc ggtgtataag ggtcttatat 2520 atactataag cctctatagg cttaatagac acgtgtaggc catccgtata atatt 2575 //