ID AY502935; SV 1; circular; genomic DNA; STD; VRL; 2786 BP. XX AC AY502935; XX DT 15-JAN-2004 (Rel. 78, Created) DT 26-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Pepper yellow vein Mali virus, complete genome. XX KW . XX OS Pepper yellow vein Mali virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2786 RX DOI; 10.1007/s00705-008-0042-9. RX PUBMED; 18278427. RA Zhou Y.C., Noussourou M., Kon T., Rojas M.R., Jiang H., Chen L.F., RA Gamby K., Foster R., Gilbertson R.L.; RT "Evidence of local evolution of tomato-infecting begomovirus species in RT West Africa: characterization of tomato leaf curl Mali virus and tomato RT yellow leaf crumple virus from Mali"; RL Arch. Virol. 153(4):693-706(2008). XX RN [2] RP 1-2786 RA Zhou Y., Jiang H., Chen L.; RT "Characterization of tomato-infecting begomoviruses (genus begomovirus, RT family geminiviridae) from Mali, Africa"; RL Unpublished. XX RN [3] RP 1-2786 RA Zhou Y., Jiang H., Chen L.; RT ; RL Submitted (15-DEC-2003) to the INSDC. RL Plant Pathology Department, UC-Davis, One Shields Avenue, Davis, CA 95616, RL USA XX DR MD5; 8e1edd34bea0c8a9a4ec6a092b5ae78b. XX FH Key Location/Qualifiers FH FT source 1..2786 FT /organism="Pepper yellow vein Mali virus" FT /mol_type="genomic DNA" FT /country="Mali" FT /db_xref="taxon:260378" FT gene 139..489 FT /gene="V1" FT CDS 139..489 FT /codon_start=1 FT /gene="V1" FT /product="pre-coat protein" FT /db_xref="GOA:Q6RCV0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6RCV0" FT /protein_id="AAR89441.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIHQPCCCLHCPRHKQASIMDLPAHV FT SKTQDVQNVQKP" FT gene 299..1075 FT /gene="V2" FT CDS 299..1075 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q6RCU9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6RCU9" FT /protein_id="AAR89442.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVSIAQGINRRRSW FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH FT RVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYLYDAVTN" FT gene complement(1072..1476) FT /gene="C3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q6RCU8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6RCU8" FT /protein_id="AAR89443.1" FT /translation="MDSRTGEHITALQAKNGVFIWEINNPLYFTITNHDIRPFNMNQDI FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVLKYLNNLGVISINN FT VIRAVDHVLYVVLVNTISVMETHEIKFNLY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q6RCU7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6RCU7" FT /protein_id="AAR89444.1" FT /translation="MQPSSPSTGHSTQVPIKVIHRRAKTKAIRRKRIDLDCGCSYYLHI FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKPRHQAIQHEPRHPHTPNTIQSQ FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKGI" FT gene complement(1548..2612) FT /gene="C1" FT CDS complement(1548..2612) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein C1" FT /db_xref="GOA:Q6RCU6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6RCU6" FT /protein_id="AAR89445.1" FT /translation="MAPPKRFKINSKNYFLTFPKCSLTKEEALEQLLNLSTPTNKKFIK FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQYH FT NLKTNLDRIFQEPPAPYVSPFLSSSFTQVPEELEECVSENVMGAAARPWRPNSIVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDW FT QSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEFLEEAKNYALKSWTLKNATFVTLDRPL FT YSSTNQGHPPQSQD" FT gene complement(2198..2455) FT /gene="C4" FT CDS complement(2198..2455) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6RCU5" FT /protein_id="AAR89446.1" FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIRTFRELNQA FT PTSSPTSTRTETPLNGGYSRSTAEVLGEAVEMLTTLQQRP" XX SQ Sequence 2786 BP; 720 A; 569 C; 660 G; 837 T; 0 other; accggatggc cgcgcccccg aaaaagatat gggccccacg cactaatatg tgtcgaccaa 60 tcatatcgca gcctgaaagg ctagatattt gtgttttgtc tttatatact tgggcaccaa 120 gtttgggcct tgtccataat gtgggatcca cttttgaacg agtttcccga gtccgttcac 180 ggatttcgtt gtatgctcgc cattaaatat ttgcaggccg tggaggaaac ttacgagccc 240 aatactttgg gccacgattt aattagggat cttattagtg ttattagggc tcgagactat 300 gtcgaagcga cccggcgata taatcatttc cacgcccgtc tcgaaggttc gtcgaaggct 360 gaacttcgac agcccataca ccagccgtgc tgctgtctcc attgcccaag gcataaacag 420 gcgtcgatca tggacctacc ggcccatgta tcgaaaaccc aggatgtaca gaatgttcag 480 aagccctgat gtccctcgtg gttgtgaggg tccgtgtaag gttcagtcgt acgaacagag 540 ggatgatgtt aagcacactg gtattgttcg ctgcgttagt gatgtcacac gtggcccggg 600 cattactcat cgtgtaggaa agagattttg tattaagtct atatatattc tgggtaagat 660 ctggatggat gaaaatatca agaagcagaa tcacaccaac caggttatgt tttttttagt 720 tcgtgataga aggccctatg gaaccagccc acaggatttt gggcaggttt ttaacatgtt 780 cgataatgag cccagtactg ctacggtgaa gaatgatttg cgtgatcgtt atcaagtcct 840 caggaaattc catgctacgg tagttggtgg accctctggg atgaaagagc aggctttagt 900 caagaggttt tttagggtta acacgcacgt cgtgtacaat catcaggaag cagctaaata 960 tgagaatcat actgagaatg ctttgttgct gtatatggca tgtactcatg cctctaaccc 1020 tgtgtatgct acgcttaaga tacgcatcta tttatatgat gccgttacga attaataaag 1080 attgaatttt atttcatgag tttccataac ggaaatcgta tttacaagta caacatataa 1140 cacatgatca actgctctaa ttacattatt gatagaaatt acacctaaat tattcaaata 1200 cttcaaaact tggaacctaa atacccttaa gaaaagacca gtctgaggcc gtaaggtcgt 1260 ccagaccttg aagttgagaa aacatttgtg aatccccagt gccctcctga ggttgtgatt 1320 gaatcgtatt tggagtgtga ggatgtcttg gttcatgttg aatggcctga tgtcgtggtt 1380 tgttatcgtg aaatagaggg gattgtttat ctcccatata aaaacgccat tctttgcttg 1440 aagagcagtg atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt 1500 agtatgaaca gccgcagtcg aggtctattc gcttacggcg gatggcttta gtcttggctc 1560 tgcggtggat gaccttgatt ggtacttgag tagagtggcc tgtcgagggt gacgaaggtt 1620 gcattcttta gtgtccagct cttgagtgcg taattcttcg cctcttctag gaattcttta 1680 tatgaggatg ttgggcctgg attgcagagg aagatagagg gaattccgcc tttaatttga 1740 attggcttcc cgtactttgt gttgctttgc cagtccctct gggccccaaa gaattctttc 1800 cagtgcttta gatagtgcgg gtcgacgtca tcaatgacgt tataccaagc atcattagaa 1860 taaacctttg gacttaagtc taaatgacca cataagtaat tatgtggccc taatgaccta 1920 gcccaaacag ttttgccggt acgactatcg ccctctacta caatactatt cggcctccac 1980 ggccgcgcag cggcacccat gacattctca gacacgcact cttcaagttc ttctggaact 2040 tgagtaaaag aagacgaaag aaaaggagaa acataaggag ctgggggctc ttgaaaaatc 2100 ctatctaaat tagtttttaa attatgatat tgaaaaataa attctttagg gagtttctcc 2160 ctaataatag ccatagcggc ttcagcggaa tctgcattta aggcctctgc tgcagcgtcg 2220 ttagcatttc gacagcctcc cctagcactt ctgccgtcga cctggaatac cccccattca 2280 agggtgtctc cgtccttgtc gatgtaggac ttgacgtcgg agcttgattt agctccctga 2340 atgttcggat ggaaatgtgt tgacctggtt ggggatacca ggtcgaagaa tctgttattc 2400 gtgcactggt atttcccctc gaactgcata agcacgtgga gatgaggttc cccatttgtg 2460 tgcaactctc tgcagacttt gatgaatttt ttatttgttg gggttgacag atttagaagt 2520 tgctctaacg cttcttcttt agtgagggag cattttggga aagtgaggaa ataatttttg 2580 gaatttattt taaaacgctt tggaggagcc atttggtcaa tgtaccccaa ttgaccgctc 2640 ttggcatttg gtgcctacaa tcggtgtaat ggggtacaat atatacctgt acccctaatg 2700 gcaatatggt aatttggtaa agagcttttt actttaattc gaaattggaa tttcgaattt 2760 tttttagcgg ccatccgtat aatatt 2786 //