ID AY502934; SV 1; circular; genomic DNA; STD; VRL; 2794 BP. XX AC AY502934; XX DT 15-JAN-2004 (Rel. 78, Created) DT 15-JAN-2004 (Rel. 78, Last updated, Version 1) XX DE Tomato yellow leaf curl Mali virus, complete genome. XX KW . XX OS Tomato yellow leaf curl Mali virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2794 RA Zhou Y., Jiang H., Chen L., Gilbertson R.L.; RT "Characterization of tomato-infecting begomoviruses (genus begomovirus, RT family geminiviridae) from Mali, Africa"; RL Unpublished. XX RN [2] RP 1-2794 RA Zhou Y., Jiang H., Chen L., Gilbertson R.L.; RT ; RL Submitted (15-DEC-2003) to the INSDC. RL Plant Pathology Department, UC-Davis, One Shields Avenue, Davis, CA 95616, RL USA XX DR MD5; 6b8da2179fbc66bb85cea7ded060a525. DR EuropePMC; PMC2224568; 17977971. XX FH Key Location/Qualifiers FH FT source 1..2794 FT /organism="Tomato yellow leaf curl Mali virus" FT /mol_type="genomic DNA" FT /country="Mali" FT /db_xref="taxon:260377" FT gene 146..496 FT /gene="V1" FT CDS 146..496 FT /codon_start=1 FT /gene="V1" FT /product="pre-coat protein" FT /db_xref="GOA:Q6RCV6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6RCV6" FT /protein_id="AAR89435.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHV FT PKAQNIQNVSKP" FT gene 306..1082 FT /gene="V2" FT CDS 306..1082 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q6RCV5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6RCV5" FT /protein_id="AAR89436.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1079..1483) FT /gene="C3" FT CDS complement(1079..1483) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q6RCV4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6RCV4" FT /protein_id="AAR89437.1" FT /translation="MDLRTGELITAPQAENGVFIWEINNPLYFKITDHNQRPFNMDHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQILKYLNNVGVISINN FT VIRAVDHVLYDVLEQTIDVTETHDIKYNFY" FT gene complement(1224..1631) FT /gene="C2" FT CDS complement(1224..1631) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q6RCV3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q6RCV3" FT /protein_id="AAR89438.1" FT /translation="MQPSSPSTSHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRPQPEAIQHGSRHHFNTDPIQSQ FT HQEGTGDSQMFSQLQNLDDLTASDWSFLKSI" FT gene complement(1540..2619) FT /gene="C1" FT CDS complement(1540..2619) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein C1" FT /db_xref="GOA:Q6RCV2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6RCV2" FT /protein_id="AAR89439.1" FT /translation="MAPPKRFKINAKNYFLTYPQCSLSLTEALSQLQTLETPVNKLYIK FT ICRELHENGEPHLHALVQFKGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRVIKELAPKDYVLQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPDSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNQGPTSSYREYLDEEKNLSLKNWALKNATFITLYKPL FT FSSTNQSATQDSQEETNQA" FT gene complement(2160..2462) FT /gene="C4" FT CDS complement(2160..2462) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6RCV1" FT /protein_id="AAR89440.1" FT /translation="MGNLICMPLFSSKENTSAQITDSSTWYPQVDQHISIQTFRELNHH FT LMSSPTSTRMETPSIGESFRSMEGLQGGDNNQQTMLTQQLLTQEVSRKLLESLRN" XX SQ Sequence 2794 BP; 773 A; 529 C; 601 G; 891 T; 0 other; accggatggc cgcgcccttc ctttttgtgg tcccccttgg gtcctataga cgtcactatc 60 aaccaatcaa attgcatcct taaacgttag ataagtgttt atttgtcttt atatacttgg 120 tctccaagtt tttttgtcat gtaatatgtg ggatccactc ctaaatgaat ttcctgaatc 180 tgttcacgga tttcgttgta tgttagctat taaatatttg caggccgttg aagaaacgta 240 tgagcccaat actttgggcc acgatttaat tagggatctt atatctgttg taagggcccg 300 tgactatgtc gaagcgaccc ggcgatataa tcatttccac gcccgtctcg aaggttcgcc 360 gaaggctgaa cttcgacagc ccatacagca gccgtgctgc tgcccccatt gtccaaggca 420 taaacaagcg acggtcatgg acgtacaggc ccatgtaccg aaagcccaga atatacagaa 480 tgtatcgaag ccctgatgtt ccccgtggat gtgaaggccc atgtaaggtc caatcttatg 540 agcaacggga tgacattaag catactggtg ttgttcgttg tgttagtgat gttactcgtg 600 gttccggtat tacccacaga gtgggtaaga ggttttgtgt taagtccata tattttttag 660 gtaaggtctg gatggacgaa aatatcaaaa agcagaacca tactaatcaa gtcatgttct 720 tcttggtccg tgataggagg ccctatggaa acagcccaat ggattttgga caggttttta 780 atatgttcga caatgagccg agtaccgcaa ccgtgaagaa tgatctcagg gataggtttc 840 aagtgatgag gaaatttcat gctaccgtta ttggtggtcc ttctggtatg aaggaacagg 900 ctttagttaa gagattcttt aaaattaaca gtcatgtaac ttataatcat caggaggcag 960 ctaagtacga gaatcatact gaaaacgcct tgttattgta tatggcatgt acgcatgcct 1020 ctaatccagt gtatgcaact atgaaaatac gcatctattt ctatgattca atatcaaatt 1080 aataaaaatt atattttata tcatgggttt ctgttacatc tattgtctgt tcaagtacat 1140 catataatac atgatcaact gctctaatta cattattaat ggaaattaca cctacattat 1200 ttaaatattt aagaatttga tatctaaata ctcttaagaa acgaccagtc tgaggccgta 1260 aggtcgtcca gattctgaag ttgagaaaac atttgtgaat ccccagtacc ttcctgatgt 1320 tgtgattgaa tcggatctgt attgaaatga tgtcgtgatc catgttgaat ggcctctggt 1380 tgtggtctgt tatcttgaaa taaaggggat tgtttatctc ccagataaaa acgccattct 1440 ctgcttgagg agcagtgatg agttcccctg tgcgtaaatc catggttgat gcagttgatg 1500 tgtagatagt atgagcagcc acagtctagg tctacacgct tacgcctgat tggtttcttc 1560 ttggctatct tgtgttgcac tttgattggt acttgagaac aatggcttgt agagggtgat 1620 gaaggttgca ttcttgagag cccaattttt caatgacagg tttttttctt catctagata 1680 ttctctatat gatgaagtag gtccttgatt gcagaggaag atagtgggaa ttccaccttt 1740 aatttgaatg ggtttcccgt attttgtgtt actctgccag tccctttggg cccccatgaa 1800 ttctttaaag tgctttaaat aatgcgggtc tacgtcatca atgacgttat accacgcatc 1860 atttgaaaat atcttagggc tgagatcgag atgtccacac aaataattgt gtggacctaa 1920 cgatcgtgcc cacattgttt ttccggtacg actatcaccc tcgattacaa tactatcagg 1980 tctccatggc cgcgcagcgg aagacatgac gttctcggac acccatactt caagttcctc 2040 tggaacttga ttaaacgaag aagacaaaaa aggagaaata taaggagctg gaggctcctg 2100 aaaaattcta tctaaattac tatttaaatt atgaaattgt aaaacataat ctttgggggc 2160 tagttcctta atgactctaa gagcttccga cttacttcct gagttaagag ctgctgcgta 2220 agcatcgttt gctgattgtt gtccccccct tgcagacctt ccatcgatct gaaactctcc 2280 ccaatcgatg gtgtctccat ccttgtcgat gtaggacttg acatcagatg atgatttagc 2340 tccctgaatg tttggatgga aatgtgttga tctacttggg gataccaggt cgaagaatct 2400 gttatttgtg cactggtatt ttcctttgaa ctgaacaagg gcatgcagat gaggttcccc 2460 attttcgtga agctctctgc aaattttaat gtataattta tttacaggtg tttctagggt 2520 ttgtagttgg gaaagggctt cagttaatga aagagaacac tggggataag taaggaaata 2580 atttttggca tttattttaa aacgctttgg gggagccatt tggtcaatgt accccgattg 2640 acttggattt catttggcac ctgtaaacgg tgtaatgggg tacaatatat acttgtactc 2700 caaatggcaa tttagtaatt ttgtaaaagt atattgcaat tttaaattca aaattcgaaa 2760 atcaaatcat taaagcggcc atccgtataa tatt 2794 //