ID   AY500238; SV 1; linear; genomic RNA; STD; VRL; 1938 BP.
XX
AC   AY500238;
XX
DT   01-JUN-2004 (Rel. 80, Created)
DT   21-JUL-2006 (Rel. 88, Last updated, Version 2)
XX
DE   Humulus japonicus latent virus 3a protein and coat protein genes, complete
DE   cds.
XX
KW   .
XX
OS   Humulus japonicus latent virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-1938
RX   DOI; 10.1007/s00705-006-0771-6.
RX   PUBMED; 16639632.
RA   Scott S.W., Zimmerman M.T.;
RT   "The complete sequence of the genome of Humulus japonicus latent virus";
RL   Arch. Virol. 151(8):1683-1687(2006).
XX
RN   [2]
RP   1-1938
RA   Scott S.W., Zimmerman M.T.;
RT   ;
RL   Submitted (11-DEC-2003) to the INSDC.
RL   Entomology, Soils, and Plant Sciences, Clemson University, Clemson, SC
RL   29634-0315, USA
XX
DR   MD5; 7f2c5900ab7f120e952c3fc80cbca880.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1938
FT                   /organism="Humulus japonicus latent virus"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /db_xref="taxon:269213"
FT   CDS             111..947
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /note="movement protein"
FT                   /db_xref="GOA:Q6JE40"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:Q6JE40"
FT                   /protein_id="AAS86440.1"
FT                   /translation="MASSGNNTTDTRPSTSFQVDHQALKELAKVVHDAKLESLMELETK
FT                   CCYARIMKNSSDMQCLDFRSIQTRSFLSKIKLSLNKKEDIFVDHAIIYALYVPMVLPTT
FT                   SALASVKLLNLATAESIDIEDDMNAARASLFITRWPRSIHKDQDGVHIVLRCNAPDLKP
FT                   DTAIGVWYFLWDDSISFSKQRYEKVMPTLKFPIEETDATKIVKNKKMIQSLCNRHIKAG
FT                   LQGSDVRPESLCVDSTKPYKPLTVMQGAGKDMPIKVVEEKDHKEVEVKTVPGEARA"
FT   CDS             988..1728
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q6JE39"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:Q6JE39"
FT                   /protein_id="AAS86441.1"
FT                   /translation="MSNAFCASCGLRSHVGNCPPRRKASPGQKNRTRIYALERKRANVR
FT                   VPPGTTLNPKFFAQFSGYNAEECDLLDDVINAIPSVSVSAASQKRVTEAQLVVGDPLKG
FT                   IQGPCTHMGDATITARTGGVRGFYMALDALLTGIPDATRLKSLVMHITFLSDGGVLGLN
FT                   TERSDQYVEPNPLKRKRFEKESPFWAQILFPDNVKLSDVKNYAIMIKFDSDYSANTPLY
FT                   TRECWVNHYQLPSAVIPEEAFARK"
XX
SQ   Sequence 1938 BP; 539 A; 406 C; 454 G; 539 T; 0 other;
     gttatcataa ccacacactg aaattaaact tgcccgttgg gttttcagtg cgataacgag        60
     atcaaagcct tatctttaaa cttgcccttt gggtagataa gtgagctaat atggcgtcta       120
     gtggaaataa taccacggac acaaggccaa gcaccagttt ccaagtggac catcaagctc       180
     ttaaggagct tgctaaagtg gtccacgatg ccaaacttga aagtttgatg gaacttgaaa       240
     ccaaatgctg ctacgctaga attatgaaga attctagtga tatgcaatgc ctggattttc       300
     gatcgatcca aacgcgatcc tttctttcca agataaagtt atccttgaat aaaaaggagg       360
     atatatttgt ggatcatgca atcatatatg cactttatgt gccgatggtt ttgcctacta       420
     cgtcagcctt agcaagcgtt aagttattaa acttagcgac tgctgagagc attgatatag       480
     aagatgacat gaacgccgca cgtgcttcgt tatttataac gaggtggccc cgctcgattc       540
     ataaggatca agacggagtg cacatagtgt tgcgttgcaa tgccccagat ttgaaaccag       600
     acaccgctat tggagtgtgg tattttcttt gggatgattc tatttctttc tctaagcaaa       660
     gatatgagaa agtaatgcca actttaaaat ttccaataga ggaaactgat gccacaaaaa       720
     ttgtgaagaa taagaaaatg attcagagtc tatgtaaccg ccatattaag gcgggtttgc       780
     agggatctga tgtgcgtccg gaatcattat gtgtggattc cactaaaccg tacaaaccat       840
     tgacggttat gcaaggtgcg ggtaaagaca tgccgataaa agttgtcgaa gagaaagacc       900
     ataaagaggt cgaagtaaaa acggtccctg gcgaagccag ggcttaaatt cgttttcttt       960
     attatctttc tggtcttggt tatactcatg tcgaatgctt tctgcgcttc ctgtggtctc      1020
     aggtcccatg tcggaaattg ccctcctagg aggaaggcgt cacccggtca aaagaaccgg      1080
     acacgcatct atgccctgga aaggaagagg gccaacgtga gagtaccgcc tggtaccacg      1140
     ttgaacccta agttctttgc ccagttttct gggtacaatg ccgaggagtg tgatctcctc      1200
     gatgatgtca taaatgccat cccatcggtg tcggtctctg ccgcttccca gaagcgggtc      1260
     acagaagctc agcttgtcgt aggcgatcct ttaaagggga tccagggacc atgcactcac      1320
     atgggagatg ccaccataac cgccaggact ggcggggtga gggggttcta tatggcccta      1380
     gatgccttgt taacaggaat accagatgcc actaggctta aatccctagt gatgcacatc      1440
     acttttctta gtgatggagg tgttcttggc ctcaatactg aacgttctga tcagtacgtg      1500
     gagccaaatc ccttgaagcg taagcgcttc gagaaggaga gccctttttg ggctcaaatt      1560
     ttgtttcctg ataatgtaaa attatcggat gttaagaatt acgctatcat gataaaattt      1620
     gatagtgatt attctgctaa tactcccttg tatactaggg aatgctgggt aaatcattac      1680
     caactgccct ctgctgttat accagaggaa gcttttgcta gaaagtaaat ctagcattgt      1740
     tattccaacc atcttgctgg ttgatgaata gtccggtctt gcacccggat gagattaaat      1800
     ccatatggtt cgactctctc agaggtttaa gtcgaagaca tatatgccta ttgccccctg      1860
     taggagtgca ctagatgttg cgtgaagata tttcttcatt tgccctacca aaaggtagga      1920
     tgccccttta agggaggc                                                    1938
//