Dbfetch
ID AY500237; SV 1; linear; genomic RNA; STD; VRL; 2810 BP. XX AC AY500237; XX DT 01-JUN-2004 (Rel. 80, Created) DT 21-JUL-2006 (Rel. 88, Last updated, Version 2) XX DE Humulus japonicus latent virus p2 protein gene, complete cds. XX KW . XX OS Humulus japonicus latent virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-2810 RX DOI; 10.1007/s00705-006-0771-6. RX PUBMED; 16639632. RA Scott S.W., Zimmerman M.T.; RT "The complete sequence of the genome of Humulus japonicus latent virus"; RL Arch. Virol. 151(8):1683-1687(2006). XX RN [2] RP 1-2810 RA Scott S.W., Zimmerman M.T.; RT ; RL Submitted (11-DEC-2003) to the INSDC. RL Entomology, Soils, and Plant Sciences, Clemson University, Clemson, SC RL 29634-0315, USA XX DR MD5; 73ff423901ac1538571a456096e942ba. XX FH Key Location/Qualifiers FH FT source 1..2810 FT /organism="Humulus japonicus latent virus" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:269213" FT CDS 45..2606 FT /codon_start=1 FT /product="p2 protein" FT /note="polymerase" FT /db_xref="GOA:Q6JE41" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q6JE41" FT /protein_id="AAS86439.1" FT /translation="MASFKDIVNALFASAQQKLGLSVPLLTGDKIIVNMPSNQKKKMEL FT VAVPLLRENVRFSRETLVVFLRHPCLANMLNQWEFWAWEFNEELLPYGCSVTRVKDICV FT DGPYEDKSGYFHGSYTYAENSVYVDDYQVELCPLDDNMPPESVYEEGECSSKYQEVPPC FT EDVNLDGEEGENVGLLDMPEKDFQSLMHTRLQHLRDVGCSINLSGRGIPVIPIVAGGFS FT ETTRLNPRHAESERVFKDRLEGPELKWAGPVFKDNLRAHSVDDMDVREWVAINRPIPKK FT KLPMKISGSIDAPLLNVREVSPVLNLVNNYIPKYQMLDWHALAKFINNYQAKEKPMDIK FT ITSRGFANRHVFQQALDEILPHHHKFDDSFFQTMVECDDISIELSRCRLDLSVFNSWEK FT GSNKVKPMINSGVANRRFSTQREAMLAVQKRNMNVPNLAHCTDIPAVVAEVVDKFFKVI FT IDPDKLSQFPGFISEGELAYFEDYLRGKQPDPEMLKDPLCFQRLDKYRHMMKNNMKPVE FT DHSLNSERALMSTITYHEKGTIMSTSPIFLMAANRILMCLSDKVKIPTGKYHQLFSLDA FT HVLKHVKHWKEIDFSKFDKSQGELHHYLQREIFIRIGVPMNFIDAWVPQVTRSFISDPS FT NGLFFNVDFQRRTGDACTYLGNTLVTLCVLCHVYDLGDANVLSVVASGDDCLIGSYEKL FT DQSREYLCSTLFNFEAKFPYNQPFICSKFLIIAEMMDGREEVIAVPNPIKLLIKLGSKL FT NPEDFDEWFLAWRDHIHYFQNAHIVDQIVDLVEVRTGVRNTQCLRLALESFPHVFRSKK FT AVMREFFCMEEIESIERNRQIKAIKALNKKFKLPRSTTHVC" XX SQ Sequence 2810 BP; 828 A; 511 C; 627 G; 844 T; 0 other; gttatttgta ttgaaatata caaatatact taatcaaaat ttaaatggct tccttcaagg 60 atattgtaaa tgccttgttt gcgtcagcgc aacaaaagtt gggtttatct gtaccactgc 120 ttaccggtga taaaattatt gttaatatgc cttctaacca aaaaaaaaaa atggaattgg 180 ttgccgtgcc tcttttgcgg gaaaatgtac gcttttctag ggaaactctt gttgtgtttc 240 ttagacaccc atgcttggct aacatgctca atcaatggga attttgggcg tgggagttta 300 atgaagagtt gttaccatat ggctgttctg tgaccagagt taaagatatc tgtgtcgacg 360 ggccttatga agataaatcc ggatattttc acggatctta cacgtatgcc gaaaattcag 420 tttacgtcga tgattatcaa gtggaattgt gtccactgga tgataatatg cctcccgaat 480 ctgtttatga agagggagag tgttcttcta aataccaaga agtgccacca tgcgaggatg 540 ttaatctcga tggtgaagaa ggagaaaatg tcggacttct ggatatgcct gagaaagatt 600 ttcaatctct catgcatacc agattacaac atttgaggga cgttggttgt tcgattaacc 660 taagcggtag gggaattccc gtgattccta tagtagccgg agggtttagc gaaaccacac 720 gtttaaatcc cagacatgcc gagtcggaaa gagtttttaa agatagactc gaaggaccgg 780 agctgaagtg ggctggacct gtctttaaag ataatctccg tgcccatagt gttgatgata 840 tggatgtccg ggagtgggtg gctatcaaca gacccattcc caagaagaag ttaccgatga 900 aaatttcagg ttccattgat gcccctttgt taaatgtaag ggaagtttca cctgtcctga 960 atttggtgaa taactatatt cccaaatatc agatgctgga ttggcacgct cttgcaaaat 1020 tcatcaataa ttatcaagcc aaagaaaaac caatggatat taagatcaca tctaggggat 1080 ttgccaatcg gcatgtcttc caacaagcac tagatgagat cttaccacac catcataagt 1140 ttgatgattc gttctttcaa actatggtgg agtgtgatga tatttccata gaattatcta 1200 gatgccggtt agacttatcc gtcttcaatt cttgggagaa gggtagtaat aaagtaaaac 1260 cgatgataaa ctctggtgtc gccaatcgac gcttcagtac acagcgggag gctatgttgg 1320 ctgttcaaaa aaggaatatg aacgtaccta atttagcgca ttgtactgat ataccagccg 1380 tagtggctga ggtggttgac aaatttttta aggtcattat tgatcctgat aaattgtccc 1440 agtttccagg gtttatttcc gaaggagaat tagcatactt cgaggattac cttcggggaa 1500 agcaaccaga cccggagatg ttgaaagatc cgctctgttt tcagaggtta gataaatacc 1560 ggcatatgat gaaaaataac atgaaaccgg tagaggatca ttcgctcaat tcagagcgtg 1620 ctctcatgag tactataaca taccatgaga aagggacaat aatgtccact tcacccatct 1680 tcctaatggc tgctaataga atattgatgt gtttaagtga taaggttaaa atcccgactg 1740 gtaagtatca tcaattattc tctttagatg cccatgtgtt gaaacatgtt aaacactgga 1800 aggagattga cttctcaaaa tttgataaat ctcagggtga attgcatcat tatttgcaaa 1860 gagagatttt tatcagaatt ggagtgccta tgaatttcat agatgcatgg gttccacaag 1920 tcacgagatc tttcatttca gatccatcta acggattgtt ctttaatgtt gatttccaaa 1980 ggcgtactgg cgatgcgtgt acctacctgg gaaacacttt agtcacactt tgtgtcttat 2040 gccatgttta cgatcttggc gatgcaaatg tgctatcggt cgtagcctca ggagatgatt 2100 gcctgatagg aagttatgaa aagttggatc aaagtagaga atacttatgt tcaacacttt 2160 tcaacttcga ggcgaagttc ccttacaatc aaccatttat ctgctctaag tttcttatta 2220 tagcagaaat gatggatggt agggaggaag tcattgctgt tccaaaccca ataaaattat 2280 tgataaagtt gggcagcaaa ttgaatcctg aagattttga tgaatggttt ttagcttggc 2340 gtgatcacat tcattatttt caaaatgccc acatagtaga tcaaatagta gatctagtgg 2400 aagttcgcac tggagtgcgt aatacccaat gcttgcgctt agcgcttgag agtttcccgc 2460 atgtattcag atcaaagaag gctgttatgc gcgaattctt ttgcatggaa gaaatagaga 2520 gtatcgagag gaatcgccaa ataaaggcga ttaaagcttt aaacaaaaag tttaagttgc 2580 ctcgatcaac gacacatgtt tgttgacttg tgtctcttgt cccggctttt agccgatgac 2640 tggtccggtt ttgcacccgg atgagattaa atccatatgg ttcgactctc tcagaggttt 2700 aagtcgaaga catctatgcc tattgccccc tgtaggagtg cactagatgt tgcgtgaaga 2760 tatttcttca tttgccctac caaaaggtag gatgcccctt taagggaggc 2810 //