ID AY500236; SV 1; linear; genomic RNA; STD; VRL; 3382 BP. XX AC AY500236; XX DT 01-JUN-2004 (Rel. 80, Created) DT 21-JUL-2006 (Rel. 88, Last updated, Version 2) XX DE Humulus japonicus latent virus replicase gene, complete cds. XX KW . XX OS Humulus japonicus latent virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3382 RX DOI; 10.1007/s00705-006-0771-6. RX PUBMED; 16639632. RA Scott S.W., Zimmerman M.T.; RT "The complete sequence of the genome of Humulus japonicus latent virus"; RL Arch. Virol. 151(8):1683-1687(2006). XX RN [2] RP 1-3382 RA Scott S.W., Zimmerman M.T.; RT ; RL Submitted (11-DEC-2003) to the INSDC. RL Entomology, Soils, and Plant Sciences, Clemson University, Clemson, SC RL 29634-0315, USA XX DR MD5; da89d79d2c759c91412e9604b1c7e34c. XX FH Key Location/Qualifiers FH FT source 1..3382 FT /organism="Humulus japonicus latent virus" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:269213" FT CDS 51..3176 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:Q6JE42" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6JE42" FT /protein_id="AAS86438.1" FT /translation="MDFLAIQQLLQKSIEAQANDATSEIGKAISERALKLVENATEKRP FT CAEPLNVSFACTAEQQAVLRSHFPGREVRFSNKSSSSHSFAAAHRLLETDFIYGCFNDR FT NSPILDLGGNYVSHFKRGRFNVHSCCPLLDGRDGARHTERMLQYDAYKRANPRILEEAD FT FCNCRFEDCSHMANYAMAIHATSDMPLDVLCRTLAKKGVKKFICSIMATPEMVCFEKGE FT IEHFNVAWEVDKNADRIFFDFIRCSVLGFMTTSTPTLLQYLTVNAVKGKNWAYRVERKN FT DMNGVIIVDITFISGFNDKTDVSAGRSCAWMNKLKSMTLVRIAGLPKSLYGGEYQLITR FT RGVLINTKVLTRVIEAAFRNFKPDTPMQNAVQSIATMLSSSTNHVVVNGVSIVAGTPLQ FT MRDYIPLAVAIYVYIKRGYDAIPTLFERTGHAMTKNIFASQSVLAKVVDAFISEKSNLR FT MAVSDAEYLYSGEFSNKKEKDALYEKTEMWVKNSFFSLLKTTFCQELDHELGILSSPDL FT FIPLDRVLEDEFEIPTVLTVEEEFAGLQKKREADEKAMRVQLDKDRAEKLKLDKAILSI FT AAYIDKAGDKAPIGIAKLIPDIAKLSKPEQVFEEPDAIINPYADSISEAIEYIESTEVI FT IEDKLKLAGNSCDWSRRGMNCCFVGDDSRRVFLRNSNAWVGPPHIPNAAPTEKYEVAMT FT KDGWVFLEWEAEGFVLTEKCKRTLPDFILVNKDCVFQSGRRIIPALKQALKKDARFKVK FT ILDGVAGCGKSYQIANSVDLSDVNRDLVLTSNRNASIELREVIKASPLMKAKYVRTCDS FT YLMASRPEKARRLLFDECFMRHAGFVYAAATLAECEEVLAYGDTEQIPEISRNPAFKFR FT CHKLEGEIVQQTVTYRCPADAVYVLNKHFYKTKRNIKTKRHNPMRSLNIHAINSVRAVP FT VDKSALYLTYTQAEKEQLKSAFPGVKVLTVHEAEGASVPKVILVRLSRTSLSLYTGKDA FT VFGASHALVAISRHTHCFEYYNYAATDQDDIIWKACRDALTCSDETLLSFCC" XX SQ Sequence 3382 BP; 981 A; 641 C; 791 G; 969 T; 0 other; gttatttgta ttgatatgta caaatatact taatcagaca cattaatccg atggattttc 60 ttgcaataca gcaactattg caaaagtcga tcgaggctca ggccaacgac gctacttccg 120 agatcggaaa agctatatct gaacgtgctc tcaaattagt tgagaatgcc acagagaaac 180 gtccctgtgc tgaaccgttg aacgtatcgt tcgcttgtac cgcagaacaa caagctgttt 240 tgcgaagtca cttcccggga cgggaagtta gattttctaa taaatcctcg tcatcgcact 300 cgtttgctgc tgcccacaga ttgctggaaa cagattttat ctatggatgt tttaatgaca 360 ggaattcccc gattctagac ttgggaggaa attatgtatc gcactttaaa cgaggtcggt 420 ttaacgtgca ttcctgctgc ccattgcttg atggcagaga tggtgcccgt catacggagc 480 gcatgctgca atatgatgca tataagagag ctaatcctag aatattagag gaggctgatt 540 tttgcaattg cagatttgaa gattgttcgc atatggcaaa ctatgcgatg gccatacatg 600 ctacctccga tatgccgcta gatgtgttgt gtcgtacatt agcgaagaag ggcgtgaaga 660 aattcatttg ctctattatg gccacaccag aaatggtatg ctttgagaaa ggtgaaattg 720 aacacttcaa tgtggcttgg gaggttgata aaaatgccga tagaattttt tttgatttta 780 tccgatgctc cgtgcttggg tttatgacca caagtactcc tactcttttg caatacttga 840 ccgttaatgc ggtcaaagga aaaaattggg cttatagagt agagaggaag aatgacatga 900 acggggtcat tatcgttgac atcactttta ttagcggttt caatgataag actgacgttt 960 ctgctggtag atcttgcgca tggatgaaca agctgaaatc catgacttta gttagaatcg 1020 cgggtttacc aaagtcgcta tacggcggag agtatcagtt gataactcgt cgtggtgtgc 1080 tcatcaacac caaagtgtta actagggtaa tcgaggcagc ctttcggaat ttcaagcctg 1140 atacccccat gcagaatgcc gtccagagta ttgcgacgat gctttcatct tccacaaatc 1200 acgtggtcgt taacggggtt tccattgttg caggaacgcc gttgcaaatg cgagactata 1260 tccctcttgc cgtagccatt tacgtttata ttaagcgtgg ttacgatgct atacccacac 1320 tttttgagag aactggtcat gccatgacca agaatatctt tgccagtcaa tctgtgctag 1380 ctaaagtggt ggatgctttt atttccgaga aatcaaatct gagaatggct gtgtcagatg 1440 cggaatatct ttactcaggt gaattctcga ataagaagga aaaggatgct ttgtatgaga 1500 agactgagat gtgggttaag aactccttct tctcattatt aaagacaacc ttttgtcaag 1560 aattagatca tgaattggga atcctttctt cccctgatct attcattccc ttagatagag 1620 tcttagagga tgaatttgag ataccaacag ttctgacggt tgaagaagaa tttgccggct 1680 tgcagaaaaa aagagaagcc gacgagaaag ccatgcgagt tcagctggat aaagatcgag 1740 ctgagaaatt gaaactcgac aaggctattc tatcgattgc agcttatatc gataaggctg 1800 gggataaagc tcccattggt attgctaagt tgataccaga cattgccaaa ctctcgaaac 1860 ctgagcaagt ttttgaagag cctgatgcca ttataaatcc gtatgccgat agtatatcag 1920 aggctatcga gtacattgag tcaacggagg ttataatcga agataaacta aaattggctg 1980 ggaattcctg cgattggtcc aggagaggca tgaactgctg tttcgtggga gatgattcca 2040 gaagagtttt tctgagaaat tccaatgctt gggttggtcc tccacacatc ccaaatgctg 2100 cgccgactga gaagtatgaa gtagccatga ctaaagatgg ttgggtcttc ttggagtggg 2160 aagcagaagg ttttgtatta acagaaaaat gcaaacgaac cttaccagat ttcattttag 2220 tgaataagga ttgcgtattc cagagcggta gaagaataat accagctttg aagcaagctc 2280 taaagaaaga tgcccggttt aaggtaaaaa ttctcgatgg agttgccgga tgtggtaaat 2340 cgtaccagat agctaactct gtagatctat ctgatgtaaa tcgtgatctg gtattaacta 2400 gtaataggaa tgccagtatc gagttgcgag aagtgatcaa agcctcacct ctgatgaaag 2460 caaaatatgt gaggacttgc gattcttacc tcatggcctc tagaccagaa aaggctagaa 2520 gattattgtt cgacgaatgt ttcatgagac atgcgggttt cgtttacgct gcggccactc 2580 tggctgagtg tgaagaagtt ctggcatacg gagacaccga acagattcct gaaattagcc 2640 gaaatccggc ttttaaattc agatgtcaca aattagaagg tgaaattgtc cagcagactg 2700 tcacttatag atgtcctgct gatgctgtct atgtcttgaa taagcatttt tataagacaa 2760 agagaaatat aaaaactaag cgccataacc ccatgagatc actgaatatt catgccataa 2820 attcagtgcg cgcagtacca gttgacaaat cagctttgta tttgacttat actcaggctg 2880 agaaggaaca actgaagtca gcttttcctg gtgtgaaagt gttaactgtt cacgaagctg 2940 aaggtgcttc cgtaccaaag gtgatacttg tgaggttgtc tagaacttca ctaagtttgt 3000 acactggtaa agatgcagtt tttggagcaa gccacgcttt agtggctatc tcgagacata 3060 ctcattgttt tgagtattat aactatgccg ctacagatca agatgatatt atttggaagg 3120 cttgtaggga tgccttgaca tgtagtgatg aaactctttt gagtttttgc tgctgaatta 3180 aatcagcatg tcccaaccaa taggttgatg actagtccgg tcttgcaccc ggatgagatt 3240 aaatccatat ggttcgactc tctcagaggt ttaagtcgaa gacatctatg cctattgccc 3300 cctgtaggag tgcaatagat gttgcgtgaa gatatttctt catttgccct accaaaaggt 3360 aggatgcccc tttaagggag gc 3382 //