ID AY496068; SV 1; linear; genomic RNA; STD; VRL; 3518 BP. XX AC AY496068; XX DT 11-JAN-2004 (Rel. 78, Created) DT 15-AUG-2006 (Rel. 88, Last updated, Version 2) XX DE Parietaria mottle virus segment RNA 1, complete sequence. XX KW . XX OS Parietaria mottle virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3518 RX DOI; 10.1007/s00705-006-0803-2. RX PUBMED; 16773234. RA Scott S.W., Zimmerman M.T., Rankin D.; RT "Complete sequence of the RNA 1 and RNA 2 of Parietaria mottle virus"; RL Arch. Virol. 151(9):1895-1898(2006). XX RN [2] RP 1-3518 RA Scott S.W., Zimmerman M.T., Rankin D.; RT ; RL Submitted (05-DEC-2003) to the INSDC. RL Entomology, Soil and Plant Sciences, Clemson University, 118 Long Hall, RL Clemson, SC 29634-0315, USA XX DR MD5; c6ba78064a7c5b952dc99ba94bc77bb8. XX FH Key Location/Qualifiers FH FT source 1..3518 FT /organism="Parietaria mottle virus" FT /segment="RNA 1" FT /mol_type="genomic RNA" FT /country="Italy" FT /db_xref="taxon:64958" FT 5'UTR 1..36 FT CDS 37..3333 FT /codon_start=1 FT /product="p1 protein" FT /note="viral replicase" FT /db_xref="GOA:Q6RK14" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q6RK14" FT /protein_id="AAR88259.1" FT /translation="MDQDSLPSSSRSGVPFVDINSLLNSYIEHVRSDETTYVGRFLGEV FT ALREIKSQVDINNGDFQKLNVGFQLTADEKNALKTSFPGLEIAFKDSCQSSHSFAAAHR FT VCETLDVYKKFNTKTEKIIDLGGNYVTHAKHGRSNVHSCCPILDVRDGARHTDRYMSLA FT SAVEKHHKDLPVDFCCKKFEDCNVQAPYAMAIHSISDIPITTVAKHCVRRGVRKLIATV FT MMDPAMMIYDSGHIPFLNVDWEKEDVECDGKVKPLIHFHFVDAPGLSYSHDFSVLSQYM FT ITNQVIVGDGYSYRVERTNDLNGVFIVEMTLSMTDGITMNHMRPLSDISCAWLTRLRKK FT VFVKLAVPVSHEWFTESFEIRWALMDESLVRYVSEAAFRQYSKEKNAETVVQYIATMLS FT SSSNHVVINGITMRSGSPIKNEEYVPLAVTFYAMAAWRYKMIAPGLAAVATKANRNIDE FT YREKEIKARNSDETLSDVLVDIQKSILPDDDLGFKNFEKLPDMIESVGLRCIKGKTLKK FT IRDDTTLLQSRSFIRETLREIRAFFGLTLTDSDFNFVEGTPASLKSMVVWKTFVRNLEF FT PSCLDVSECSYNLMNKHLAQKVEIEREEKKRKDFLDARDRALITIAKVLEKPDVPDGLL FT PLLDLCEVKDELVAATNSLSLTPQTIDVAADDSTVNPYAESIKEAIHYFNELEVVNTRN FT LRTLGSYINWKPASTPHTYSSLQGRNESVKVFIPFENRWYPNTKDLQPYERAMTEDGYV FT SLQWTNDGKSFTDQCFASLRRYGAIVVDDSCVFNSGQRLIPALESALKIKPRFSVKIVD FT GVAGCGKTTHLKKISRLDANPDIVLTSNRSSSDELKEALTCPEAMKYRIRTVDSYLMLK FT SWFSASRMLFDECFLTHAGCVYAAATLAQVSEVIALGDTEQVPFISRLPEFRMQHHKLS FT GEIETQTTTYRCPRDATYCLKSMFYKNKSVKTASVVERSIDLVPISSPIQIPCENDVLY FT ITHTRADKDALLKIPGFKKENIKTTHEAQGDTWDKVVCFRLSKTTNLLHSGKGPELGSC FT HNLVAISRHRKSFRYYTVAPNDLDDQLVRCTGLVKTLSNSDLDSVRRLRT" FT 3'UTR 3334..3518 XX SQ Sequence 3518 BP; 966 A; 697 C; 863 G; 992 T; 0 other; gtattgtgct tcgaataaga acacaacctc cacaaaatgg atcaggattc attgccttct 60 tcttcacgtt ctggtgttcc gtttgttgac atcaatagct tattaaatag ctatattgaa 120 catgtcagat ctgacgagac cacgtacgta ggtcgttttc taggagaggt agccttgaga 180 gagatcaagt ctcaagttga cattaataat ggtgatttcc agaagttgaa cgttggattc 240 caactgactg ctgacgagaa aaatgccttg aagaccagtt tcccgggttt ggaaatagcg 300 ttcaaggatt catgccaatc ttcacatagt tttgctgccg cacacagggt gtgcgagact 360 ttagatgtgt acaagaagtt caacaccaaa accgagaaga tcatcgatct cggtggtaat 420 tacgtcaccc atgctaaaca tgggcgatct aatgtccatt cgtgttgtcc gatattggat 480 gtgagggacg gggctcgtca caccgatagg tacatgtcct tagcttctgc tgtcgaaaaa 540 catcacaaag atctgccggt ggatttttgt tgcaagaagt ttgaagactg caatgtccag 600 gccccgtatg ccatggcgat acattccatc agcgacattc cgatcaccac cgttgcaaaa 660 cattgtgtgc gacgtggggt acgaaagttg atagctaccg ttatgatgga tcctgccatg 720 atgatttatg actctggtca tatacccttc ctcaacgttg attgggaaaa ggaagacgtt 780 gagtgtgacg gtaaggtgaa accactcatt catttccact ttgtggatgc ccctggattg 840 agttactctc atgatttctc ggtgttgtct cagtatatga ttactaatca agttatcgtt 900 ggtgacgggt actcttatag agtggaacga actaacgact tgaatggtgt gttcattgtt 960 gaaatgactc tcagcatgac cgatgggatc acgatgaacc acatgaggcc tttgtccgac 1020 atctcatgtg cgtggttaac tcgacttagg aagaaggttt tcgtcaaact ggccgtgcca 1080 gtgtcccacg agtggttcac tgaatcattt gaaattcgtt gggcactgat ggatgaatcg 1140 ttggtcaggt acgtttccga agctgcgttt cgtcagtatt cgaaggagaa aaatgctgaa 1200 accgtcgtcc agtatattgc gacgatgttg tcttcctcgt ctaaccatgt cgtcattaat 1260 gggatcacta tgcgtagtgg cagtcctatt aagaacgaag aatatgttcc gttagcggtt 1320 acattttacg ctatggcggc atggagatac aagatgattg cccctggtct ggctgccgtc 1380 gcgactaagg ccaacagaaa catcgacgaa tatcgcgaaa aggaaataaa agcgagaaat 1440 tccgatgaga ctctatccga tgtgcttgtt gacattcaaa aatcgatttt gcccgatgat 1500 gatcttgggt ttaagaattt tgaaaagctt ccggatatga tcgaatctgt tggtcttaga 1560 tgtatcaaag gcaaaacgct gaaaaagatt agggatgata ctaccctttt acagtcccgc 1620 agcttcatcc gtgagacgct tcgtgagatc cgagcgttct ttgggttgac gctgactgat 1680 tccgatttca acttcgtgga aggtacaccc gcgagtttga aatcgatggt ggtctggaag 1740 actttcgtaa ggaatcttga gttcccgtcg tgcctcgatg tgtctgagtg ctcttataat 1800 ctcatgaaca agcacttggc gcagaaggtc gagattgaac gagaggagaa aaagaggaaa 1860 gatttcttag atgccaggga ccgagctttg ataacgattg ccaaagtttt ggaaaaacct 1920 gatgttcccg atggtctgtt accgctgttg gatttatgcg aagtgaagga tgagttggtt 1980 gccgcaacga attcgctttc attgactcct cagaccattg atgttgccgc cgacgattct 2040 accgttaatc cttatgccga gagcattaaa gaagcaattc actactttaa tgaacttgaa 2100 gttgtcaaca cgaggaatct gagaactttg ggatcgtaca taaactggaa accagctagt 2160 acaccccata catatagttc tcttcaaggt agaaatgagt cagtgaaggt gttcataccg 2220 tttgagaaca gatggtatcc gaatacgaaa gacttacaac catatgaaag ggctatgaca 2280 gaagatggtt atgtgagtct tcaatggact aatgatggaa agtcctttac cgatcaatgt 2340 tttgcgtcgt tgcgtcgtta cggtgcaatc gtggttgatg attcatgcgt gtttaattcc 2400 gggcagaggt tgattcctgc tcttgagagc gcattgaaaa ttaaaccaag gttttctgtt 2460 aagatcgttg atggtgttgc gggttgtggg aaaacaaccc atctcaagaa aatttcgaga 2520 ttggatgcga atcccgacat tgtgttgacg agtaacagaa gctcatcaga tgagttgaag 2580 gaagcgttga cgtgccctga agcgatgaag taccgcatta ggacagtcga cagttacctg 2640 atgttgaaat cttggttttc cgccagcaga atgttgttcg atgagtgctt tttgacgcat 2700 gctggttgcg tgtatgcagc cgcaactttg gctcaggtta gtgaagtgat tgctttaggt 2760 gataccgagc aagtaccctt catatctagg ttacctgagt ttcgcatgca gcaccataag 2820 ttgtcgggag aaattgagac tcaaaccaca acttatagat gcccaagaga tgccacgtat 2880 tgtttgaagt caatgtttta caaaaacaaa agcgtgaaga cagcgagcgt ggttgaacgt 2940 tcgattgatt tggttccaat cagtagtcca atccagatac cgtgtgaaaa cgatgtttta 3000 tacataacgc acacgagagc cgataaagat gcccttctga agattcccgg gtttaagaag 3060 gagaacataa aaacaactca tgaggcccaa ggtgacacgt gggataaagt tgtttgtttc 3120 cgtctttcta agacgacgaa tctactgcat tctggtaaag gacctgaact tggatcgtgt 3180 cataatctag ttgcaatctc gagacatcgg aaatcattta gatactatac cgtagccccg 3240 aatgatttgg atgatcaact cgtgagatgc actggtctgg tcaagacgtt gtctaacagc 3300 gatcttgatt cggttaggag attgaggacc taaccatttc gtatcgtgag atacgatacc 3360 tccttaaggg agatgttttt ccacaatgag agttgtgatg ccccaatagt gggaagaacg 3420 ttcgggtggc tacttaagcg cttctatact taagtaccga acgctgttcc gttattatct 3480 agtgacaata acgatgccta tttctatgaa atagaagc 3518 //